Rh2CG252500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000907
Physical Location & Seq
Reverse (-)
26730617 .. 26732383
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG252500.1

Sequence Viewer

Length: 612 bp
ATGCTACTGCTATCATTTGGCATCATAGCAAATCTTAATCTTCCACTTATTAGACAACATGTCACTTCACTTTATGAATGGGTCAGGTATGCTTTTGATTCTCTCCCTGGACCTTCCCTTGAGCTATTCTTAGTTCTTCTATGGGCCATTTGGAAAGAACGAAACAACATTCTTTGGAAGAATGATTGTTTTAATCCAATTAATGTACTTGCATGGGCTACTACTTGGTTGGAGGAGATAAAGAAGGTGCACCGAGATTGCTCACATACCACAAACAGAAACAATACCGTTCGCAAACCGGCTACACGTTGTTGGACTGCTCCTTCTGTTGGGAGAGTTAAATTAAATGCGGACCGGGCCGACAATCTGAACAACAAGCTTGGCGGTGTGGGTATAGTACTCAGATCAGATTCAGAACAGGCCTATGGCGAAGAACCAGCTCCATACGTTGTTGTGGTGCATGGACCTCCAAAGGTTGGCAAGTCCTTGTTAATAGAGTCACTTGTAAAGCATTATACCAAGCTCGATTTGCCTGAGAAGGTTCGAGGCCCGATTACCATTGTGTCAGGTAGTTACAGATTGTGGAGTGCCCGAATGACATCAACGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

203

Amino Acids

23.0

Weight (kDa)

9.54

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 2 cut(s) 350, 384
AfaI GTAC 2 cut(s) 207, 399
AfiI CCNNNNNNNGG 2 cut(s) 329, 476
AflIII ACRYGT 2 cut(s) 58, 305
AhdI GACNNNNNGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 4 cut(s) 124, 379, 440, 523
AluI AGCT 4 cut(s) 124, 379, 440, 523
Alw21I GWGCWC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 248
AoxI GGCC 4 cut(s) 144, 357, 420, 547
ApaLI GTGCAC 1 cut(s) 248
AseI ATTAAT 1 cut(s) 201
AspS9I GGNCC 6 cut(s) 110, 144, 352, 357, 464, 548
AsuC2I CCSGG 1 cut(s) 356
AvaII GGWCC 3 cut(s) 110, 352, 464
BaeGI GKGCMC 2 cut(s) 252, 592
Bbv12I GWGCWC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 108
BcnI CCSGG 1 cut(s) 356
BmcAI AGTACT 1 cut(s) 399
Bme1390I CCNGG 2 cut(s) 108, 356
Bme18I GGWCC 3 cut(s) 110, 352, 464
BmeRI GACNNNNNGTC 1 cut(s) 59
BmgT120I GGNCC 6 cut(s) 110, 144, 352, 357, 464, 548
BmrFI CCNGG 2 cut(s) 108, 356
BmsI GCATC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 476
Bse118I RCCGGY 1 cut(s) 298
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 329, 476
BseMII CTCAG 2 cut(s) 415, 525
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 2 cut(s) 252, 592
BshFI GGCC 4 cut(s) 146, 359, 422, 549
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 2 cut(s) 299, 355
BslI CCNNNNNNNGG 2 cut(s) 329, 476
BsnI GGCC 4 cut(s) 146, 359, 422, 549
Bsp1286I GDGCHC 2 cut(s) 252, 592
Bsp143I GATC 1 cut(s) 404
BspACI CCGC 2 cut(s) 350, 384
BspANI GGCC 4 cut(s) 146, 359, 422, 549
BspCNI CTCAG 2 cut(s) 414, 526
BsrFI RCCGGY 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 289, 607
BstDEI CTNAG 3 cut(s) 130, 401, 534
BstKTI GATC 1 cut(s) 407
BstMBI GATC 1 cut(s) 404
BstMWI GCNNNNNNNGC 2 cut(s) 356, 529
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 106, 354
BstSLI GKGCMC 2 cut(s) 252, 592
BsuRI GGCC 4 cut(s) 146, 359, 422, 549
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 6 cut(s) 110, 144, 352, 357, 464, 548
CpoI CGGWCCG 1 cut(s) 352
Csp6I GTAC 2 cut(s) 206, 398
CspI CGGWCCG 1 cut(s) 352
CviAII CATG 3 cut(s) 59, 213, 461
CviQI GTAC 2 cut(s) 206, 398
DdeI CTNAG 3 cut(s) 130, 401, 534
DpnI GATC 1 cut(s) 406
DpnII GATC 1 cut(s) 404
DriI GACNNNNNGTC 1 cut(s) 59
Eam1105I GACNNNNNGTC 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 422
Eco47I GGWCC 3 cut(s) 110, 352, 464
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 3 cut(s) 62, 216, 464
FatI CATG 3 cut(s) 58, 212, 460
HaeIII GGCC 4 cut(s) 146, 359, 422, 549
HapII CCGG 2 cut(s) 299, 355
Hin1II CATG 3 cut(s) 62, 216, 464
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 98, 410, 497
HpaII CCGG 2 cut(s) 299, 355
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 4 cut(s) 369, 404, 409, 415
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 123, 238, 333, 532
HpyCH4III ACNGT 2 cut(s) 289, 607
HpyCH4IV ACGT 2 cut(s) 307, 447
HpyCH4V TGCA 3 cut(s) 212, 250, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 529
HpyF3I CTNAG 3 cut(s) 130, 401, 534
HpySE526I ACGT 2 cut(s) 307, 447
Hsp92II CATG 3 cut(s) 62, 216, 464
Kzo9I GATC 1 cut(s) 404
LmnI GCTCC 2 cut(s) 325, 445
LpnPI CCDG 9 cut(s) 70, 93, 120, 312, 368, 404, 450, 546, 552
LweI GCATC 1 cut(s) 30
MaeII ACGT 2 cut(s) 307, 447
MaeIII GTNAC 3 cut(s) 61, 498, 572
MalI GATC 1 cut(s) 406
MboI GATC 1 cut(s) 404
MboII GAAGA 4 cut(s) 32, 128, 190, 443
MhlI GDGCHC 2 cut(s) 252, 592
MluCI AATT 2 cut(s) 198, 341
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 2 cut(s) 210, 293
MnlI CCTC 3 cut(s) 226, 477, 539
MseI TTAA 6 cut(s) 36, 192, 201, 339, 344, 491
MspI CCGG 2 cut(s) 299, 355
MspR9I CCNGG 2 cut(s) 108, 356
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 356, 529
NciI CCSGG 1 cut(s) 356
NdeII GATC 1 cut(s) 404
NlaIII CATG 3 cut(s) 62, 216, 464
NmuCI GTSAC 2 cut(s) 61, 498
NspI RCATGY 1 cut(s) 62
PceI AGGCCT 1 cut(s) 422
PciI ACATGT 1 cut(s) 58
PfeI GAWTC 2 cut(s) 98, 410
PflMI CCANNNNNTGG 1 cut(s) 476
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PscI ACATGT 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 6 cut(s) 110, 144, 352, 357, 464, 548
RsaI GTAC 2 cut(s) 207, 399
RsaNI GTAC 2 cut(s) 206, 398
Rsr2I CGGWCCG 1 cut(s) 352
RsrII CGGWCCG 1 cut(s) 352
SaqAI TTAA 6 cut(s) 36, 192, 201, 339, 344, 491
Sau3AI GATC 1 cut(s) 404
Sau96I GGNCC 6 cut(s) 110, 144, 352, 357, 464, 548
ScaI AGTACT 1 cut(s) 399
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 108, 356
SduI GDGCHC 2 cut(s) 252, 592
SfaNI GCATC 1 cut(s) 30
SinI GGWCC 3 cut(s) 110, 352, 464
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 198, 341
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 2 cut(s) 350, 384
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 106, 354
TaaI ACNGT 2 cut(s) 289, 607
TaiI ACGT 2 cut(s) 310, 450
TaqI TCGA 2 cut(s) 525, 544
TasI AATT 2 cut(s) 198, 341
TatI WGTACW 2 cut(s) 205, 397
TfiI GAWTC 2 cut(s) 98, 410
Tru1I TTAA 6 cut(s) 36, 192, 201, 339, 344, 491
Tru9I TTAA 6 cut(s) 36, 192, 201, 339, 344, 491
TseFI GTSAC 2 cut(s) 61, 498
Tsp45I GTSAC 2 cut(s) 61, 498
TspDTI ATGAA 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 476
VneI GTGCAC 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 110, 352, 464
VspI ATTAAT 1 cut(s) 201
XceI RCATGY 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.