Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

14728015 .. 14729944

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTCACCTCGGATCTTGAAATAGCTCGATTTGAAGGTGCTGCTGTTCGAACTGTCAGTGGAATCCGGGGGCAGGTCAAAAAGGCTGCGAAAGAAGAAATTGGTAACCAACCAAAAAAGATGGGTGGACAACCAAAAGAAGGGATTGCTAGGTGCACCTTCGAGGACAAAATTAAGATGAGTGACATTGTTTTTTTGCGTGCTTGGACTCAAGTTGAAGTTCCCCAATTTTACAACCCATTGACAACATCCCTGCAACCTCGCGAAAAGACCTGGCAAGGGATGAAAACTACTGCTGAGTTGAGGAGAGAACATAATATTCCTATTCCTGTCAATAAAGATTCACTTTACAAGCCAATTGAAAGGAAGCTGAAGAAGTTCAACCCCTTGGTGATTCCCAAGTCACTGCAAAGCGCTCTGCCATTTTCTTCAAAACCTAAGGATATACCCAGTAGGAAAAGGCCGCTTCTTGAAAATAGAAGAGCTGTTGTCATGGAGCCTCATGAACGTAAAGTTCATACTCTTGTTCAACATCTCGGATTAATACGAAACGAGAAGATAAAGAAGCGCAAGCTAAAAGATGATAAAAAGAGGAAAGAAAATGAAGCGCAGAAAGCCAAAGAAGAGCAATTGTCTAAAAAGCGCCAGAGAGAAGAACGACGGGAGAGGTATCGGGCGCAAGACAAAATGAAGAAGAAAACGAGGAGAAGCAGAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

241

Amino Acids

28.24

Weight (kDa)

10.38

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccII	CGCG	1 cut(s)	264
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	392
AfeI	AGCGCT	1 cut(s)	415
AfiI	CCNNNNNNNGG	3 cut(s)	73, 140, 279
AgsI	TTSAA	8 cut(s)	20, 35, 218, 362, 382, 432, 473, 530
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	4 cut(s)	26, 370, 485, 574
AluI	AGCT	4 cut(s)	26, 370, 485, 574
Alw21I	GWGCWC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	21
Aor51HI	AGCGCT	1 cut(s)	415
AoxI	GGCC	1 cut(s)	461
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	41, 86
AseI	ATTAAT	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	5 cut(s)	416, 570, 610, 645, 679
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	403
AsuII	TTCGAA	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	28, 73
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	68
BfaI	CTAG	1 cut(s)	150
BfoI	RGCGCY	2 cut(s)	417, 646
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	3 cut(s)	42, 87, 464
BlsI	GCNGC	3 cut(s)	43, 88, 465
Bme1390I	CCNGG	2 cut(s)	68, 274
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	2 cut(s)	68, 274
BmrI	ACTGGG	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	9, 67, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 140, 279
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	9, 67, 387
BseGI	GGATG	2 cut(s)	248, 288
BseLI	CCNNNNNNNGG	3 cut(s)	73, 140, 279
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	319, 718
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	28, 73
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	73, 140, 279
BsnI	GGCC	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	13
Bsp68I	TCGCGA	1 cut(s)	264
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	2 cut(s)	475, 618
BspT104I	TTCGAA	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	9, 67, 387
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	475, 618
BstBI	TTCGAA	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	201, 572
BstDEI	CTNAG	2 cut(s)	297, 438
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	248, 288
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	2 cut(s)	417, 646
BstHHI	GCGC	5 cut(s)	416, 570, 610, 645, 679
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	1 cut(s)	274
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	66, 272
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	28, 73
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	248, 288
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	64, 404
BtuMI	TCGCGA	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	201, 572
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	5 cut(s)	416, 570, 610, 645, 679
CviAII	CATG	2 cut(s)	493, 503
CviJI	RGCY	9 cut(s)	26, 86, 355, 370, 463, 485, 499, 574, 617
CviKI_1	RGCY	9 cut(s)	26, 86, 355, 370, 463, 485, 499, 574, 617
DdeI	CTNAG	2 cut(s)	297, 438
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	475, 618
EarI	CTCTTC	2 cut(s)	475, 618
Eco130I	CCWWGG	1 cut(s)	387
Eco47III	AGCGCT	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	392
Eco81I	CCTNAGG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	2 cut(s)	496, 506
FaiI	YATR	5 cut(s)	315, 446, 494, 504, 519
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	2 cut(s)	492, 502
Fnu4HI	GCNGC	3 cut(s)	42, 87, 464
FokI	GGATG	2 cut(s)	235, 295
Fsp4HI	GCNGC	3 cut(s)	42, 87, 464
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	5 cut(s)	415, 569, 609, 644, 678
GluI	GCNGC	3 cut(s)	42, 87, 464
HaeII	RGCGCY	2 cut(s)	417, 646
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	5 cut(s)	416, 570, 610, 645, 679
Hin1II	CATG	2 cut(s)	496, 506
Hin6I	GCGC	5 cut(s)	414, 568, 608, 643, 677
HinP1I	GCGC	5 cut(s)	414, 568, 608, 643, 677
HinfI	GANTC	4 cut(s)	63, 208, 341, 394
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	3 cut(s)	6, 128, 156
Hpy188I	TCNGA	2 cut(s)	13, 539
Hpy188III	TCNNGA	4 cut(s)	17, 263, 470, 503
Hpy8I	GTNNAC	3 cut(s)	6, 128, 156
Hpy99I	CGWCG	1 cut(s)	663
HpyAV	CCTTC	3 cut(s)	29, 134, 169
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	156, 256, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	2 cut(s)	297, 438
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	2 cut(s)	496, 506
HspAI	GCGC	5 cut(s)	414, 568, 608, 643, 677
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	2 cut(s)	475, 618
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	8 cut(s)	59, 80, 259, 266, 286, 342, 463, 659
Lsp1109I	GCAGC	2 cut(s)	28, 73
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	3 cut(s)	104, 182, 402
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	9 cut(s)	107, 385, 420, 492, 568, 635, 665, 703, 706
MfeI	CAATTG	2 cut(s)	357, 629
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	5 cut(s)	99, 171, 227, 357, 629
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	9 cut(s)	19, 157, 270, 297, 510, 585, 660, 696, 709
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	174, 542
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	68, 274
MunI	CAATTG	2 cut(s)	357, 629
MvaI	CCWGG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	614
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	496, 506
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	2 cut(s)	182, 402
NruI	TCGCGA	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	49
PagI	TCATGA	1 cut(s)	502
PciSI	GCTCTTC	2 cut(s)	475, 618
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	63, 341, 394
PkrI	GCNGC	3 cut(s)	43, 88, 465
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	272
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	264
SapI	GCTCTTC	2 cut(s)	475, 618
SaqAI	TTAA	2 cut(s)	174, 542
SatI	GCNGC	3 cut(s)	42, 87, 464
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	68, 274
SduI	GDGCHC	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	99, 171, 227, 357, 629
SsiI	CCGC	1 cut(s)	464
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	66, 272
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	3 cut(s)	28, 49, 162
TasI	AATT	5 cut(s)	99, 171, 227, 357, 629
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	3 cut(s)	63, 341, 394
Tru1I	TTAA	2 cut(s)	174, 542
Tru9I	TTAA	2 cut(s)	174, 542
TscAI	CASTG	2 cut(s)	64, 411
TseFI	GTSAC	2 cut(s)	182, 402
TseI	GCWGC	2 cut(s)	41, 86
Tsp45I	GTSAC	2 cut(s)	182, 402
TspDTI	ATGAA	5 cut(s)	299, 506, 519, 618, 704
TspRI	CASTG	2 cut(s)	64, 411
VneI	GTGCAC	1 cut(s)	154
VspI	ATTAAT	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.