Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

37988477 .. 37999601

Gene Structure 11125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3492 bp

ATGACTCATGACTACGCAGCGATGGAATTTGCAGACCCTCCTTCCTGTGGCATGTGGGCTTTCATGAATGAAAGTTTTGTTGGTAGATCTTTGGAGACCACAACCGGGCCCCGTTCTGGGCCTAATAGTTTCAGCGGCTTCATCCCTGTGAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGAAGACTTCATGTTCCCACCATTGATCGCTCCTCCTACGGCGGCGAACAGCCTCCTTTTGTTGTTCTTGTTCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCCATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGTTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTGTTGAAGATGTCACTCCCCCTGAAAATGTGCGCTTGAATAATAAATGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCCTGCCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGCGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCACTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCATAATGTTGCACTAACAAAACGTGATTCTAGTGGATCTGATAGAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCAAGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGACGAAGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATCGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCGGTTTCAACTAAAGCCAATGAGGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACAAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATGGAGAGTGTGCGTGATCGCTTTGTCACTGGTGATTGGTCGAAGGCTGCTAAAAGAAATCAAGACACAGAGGCGACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTCGAAGATTTAGAAACGGACGGAATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACACTCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCTGCGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAGCGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACTCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1163

Amino Acids

133.28

Weight (kDa)

6.37

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	248 - 290	5.1e-09	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	703 - 996	5.3e-84	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2762
AarI	CACCTGC	1 cut(s)	2833
Acc36I	ACCTGC	1 cut(s)	2833
AccI	GTMKAC	1 cut(s)	2546
AccII	CGCG	2 cut(s)	2698, 2970
AccIII	TCCGGA	2 cut(s)	2205, 2274
AciI	CCGC	7 cut(s)	135, 246, 394, 444, 2169, 2416, 2661
AclWI	GGATC	5 cut(s)	878, 978, 1399, 2333, 2663
AcsI	RAATTY	6 cut(s)	26, 449, 1883, 2058, 2626, 3282
AcuI	CTGAAG	2 cut(s)	1593, 2207
AfaI	GTAC	1 cut(s)	3177
AflII	CTTAAG	1 cut(s)	2540
AflIII	ACRYGT	2 cut(s)	1453, 2131
AhlI	ACTAGT	1 cut(s)	2719
AjnI	CCWGG	3 cut(s)	1035, 2405, 3041
AjuI	GAANNNNNNNTTGG	8 cut(s)	63, 95, 1163, 1195, 1245, 1277, 1661, 1693
AloI	GAACNNNNNNTCC	2 cut(s)	757, 789
Alw21I	GWGCWC	2 cut(s)	155, 2927
Alw26I	GTCTC	7 cut(s)	89, 179, 186, 1628, 1693, 1818, 3469
Alw44I	GTGCAC	1 cut(s)	2923
AlwI	GGATC	5 cut(s)	878, 978, 1399, 2333, 2663
Aor13HI	TCCGGA	2 cut(s)	2205, 2274
AoxI	GGCC	5 cut(s)	107, 119, 361, 2403, 2584
ApaI	GGGCCC	2 cut(s)	111, 2588
ApaLI	GTGCAC	1 cut(s)	2923
ApeKI	GCWGC	8 cut(s)	17, 202, 613, 905, 922, 1352, 1973, 2855
ApoI	RAATTY	6 cut(s)	26, 449, 1883, 2058, 2626, 3282
ArsI	GACNNNNNNTTYG	2 cut(s)	978, 1010
AspLEI	GCGC	6 cut(s)	828, 2970, 2972, 3035, 3339, 3414
AspS9I	GGNCC	7 cut(s)	107, 108, 119, 281, 362, 2584, 2585
AsuC2I	CCSGG	3 cut(s)	106, 2837, 3443
AsuHPI	GGTGA	9 cut(s)	367, 560, 860, 1418, 1970, 2042, 2650, 2857, 3172
AsuII	TTCGAA	2 cut(s)	2037, 2818
AvaII	GGWCC	1 cut(s)	281
AxyI	CCTNAGG	1 cut(s)	3207
BaeGI	GKGCMC	4 cut(s)	111, 416, 2588, 2927
BaeI	ACNNNNGTAYC	4 cut(s)	360, 393, 2118, 2151
BanII	GRGCYC	3 cut(s)	111, 155, 2588
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	4 cut(s)	214, 1097, 1599, 3179
Bbv12I	GWGCWC	2 cut(s)	155, 2927
BbvI	GCAGC	8 cut(s)	29, 214, 625, 892, 909, 1339, 1960, 2842
BceAI	ACGGC	3 cut(s)	173, 259, 2682
BcgI	CGANNNNNNTGC	2 cut(s)	1556, 1590
BciT130I	CCWGG	3 cut(s)	1037, 2407, 3043
BciVI	GTATCC	2 cut(s)	2387, 3205
BclI	TGATCA	2 cut(s)	309, 1012
BcnI	CCSGG	3 cut(s)	106, 2837, 3443
BcoDI	GTCTC	7 cut(s)	89, 179, 186, 1628, 1693, 1818, 3469
BcuI	ACTAGT	1 cut(s)	2719
BfaI	CTAG	3 cut(s)	785, 1386, 2720
BfmI	CTRYAG	1 cut(s)	3060
BfoI	RGCGCY	1 cut(s)	3415
BfrI	CTTAAG	1 cut(s)	2540
BfuAI	ACCTGC	1 cut(s)	2833
BfuI	GTATCC	2 cut(s)	2387, 3205
BglII	AGATCT	3 cut(s)	86, 1204, 2782
BlpI	GCTNAGC	1 cut(s)	877
Bme1390I	CCNGG	6 cut(s)	106, 1037, 2407, 2837, 3043, 3443
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	7 cut(s)	107, 108, 119, 281, 362, 2584, 2585
BmiI	GGNNCC	7 cut(s)	109, 110, 364, 2118, 2585, 2586, 3267
BmrFI	CCNGG	6 cut(s)	106, 1037, 2407, 2837, 3043, 3443
BmsI	GCATC	9 cut(s)	430, 577, 979, 1339, 1564, 2008, 2539, 2702, 2841
BpiI	GAAGAC	4 cut(s)	214, 1097, 1599, 3179
BplI	GAGNNNNNCTC	4 cut(s)	754, 786, 3253, 3285
BpmI	CTGGAG	2 cut(s)	161, 2535
Bpu1102I	GCTNAGC	1 cut(s)	877
Bpu14I	TTCGAA	2 cut(s)	2037, 2818
BpuEI	CTTGAG	4 cut(s)	1094, 2699, 2964, 3260
BpuMI	CCSGG	3 cut(s)	106, 2837, 3443
Bsa29I	ATCGAT	1 cut(s)	1629
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	288, 535, 1092, 2664, 2836
BsaWI	WCCGGW	2 cut(s)	2205, 2274
Bse1I	ACTGG	8 cut(s)	178, 1913, 1960, 2140, 2395, 2448, 2611, 3162
Bse21I	CCTNAGG	1 cut(s)	3207
Bse3DI	GCAATG	4 cut(s)	464, 2527, 2563, 2580
BseAI	TCCGGA	2 cut(s)	2205, 2274
BseBI	CCWGG	3 cut(s)	1037, 2407, 3043
BseCI	ATCGAT	1 cut(s)	1629
BseDI	CCNNGG	5 cut(s)	288, 535, 1092, 2664, 2836
BseGI	GGATG	8 cut(s)	141, 748, 772, 1045, 1084, 2832, 3057, 3355
BseMI	GCAATG	4 cut(s)	464, 2527, 2563, 2580
BseMII	CTCAG	6 cut(s)	590, 1338, 2793, 3057, 3312, 3473
BseNI	ACTGG	8 cut(s)	178, 1913, 1960, 2140, 2395, 2448, 2611, 3162
BsePI	GCGCGC	1 cut(s)	2968
BseRI	GAGGAG	7 cut(s)	226, 1553, 1799, 2126, 2207, 3088, 3487
BseSI	GKGCMC	4 cut(s)	111, 416, 2588, 2927
BseXI	GCAGC	8 cut(s)	29, 214, 625, 892, 909, 1339, 1960, 2842
BseYI	CCCAGC	1 cut(s)	1280
Bsh1236I	CGCG	2 cut(s)	2698, 2970
BshFI	GGCC	5 cut(s)	109, 121, 363, 2405, 2586
BshVI	ATCGAT	1 cut(s)	1629
BsiHKAI	GWGCWC	2 cut(s)	155, 2927
BsiSI	CCGG	5 cut(s)	105, 2206, 2275, 2836, 3442
BslFI	GGGAC	2 cut(s)	301, 2296
BsmAI	GTCTC	7 cut(s)	89, 179, 186, 1628, 1693, 1818, 3469
BsmBI	CGTCTC	2 cut(s)	179, 1818
BsmFI	GGGAC	2 cut(s)	301, 2296
BsmI	GAATGC	1 cut(s)	1227
BsnI	GGCC	5 cut(s)	109, 121, 363, 2405, 2586
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	2 cut(s)	2037, 2818
Bsp120I	GGGCCC	2 cut(s)	107, 2584
Bsp1286I	GDGCHC	5 cut(s)	111, 155, 416, 2588, 2927
Bsp13I	TCCGGA	2 cut(s)	2205, 2274
Bsp1720I	GCTNAGC	1 cut(s)	877
Bsp19I	CCATGG	2 cut(s)	535, 1092
Bsp68I	TCGCGA	1 cut(s)	2698
BspACI	CCGC	7 cut(s)	135, 246, 394, 444, 2169, 2416, 2661
BspANI	GGCC	5 cut(s)	109, 121, 363, 2405, 2586
BspCNI	CTCAG	6 cut(s)	591, 1337, 2792, 3058, 3313, 3472
BspDI	ATCGAT	1 cut(s)	1629
BspEI	TCCGGA	2 cut(s)	2205, 2274
BspFNI	CGCG	2 cut(s)	2698, 2970
BspHI	TCATGA	5 cut(s)	7, 63, 685, 2305, 3271
BspLI	GGNNCC	7 cut(s)	109, 110, 364, 2118, 2585, 2586, 3267
BspMI	ACCTGC	1 cut(s)	2833
BspPI	GGATC	5 cut(s)	878, 978, 1399, 2333, 2663
BspQI	GCTCTTC	2 cut(s)	3244, 3417
BspT104I	TTCGAA	2 cut(s)	2037, 2818
BspTI	CTTAAG	1 cut(s)	2540
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	4 cut(s)	464, 2527, 2563, 2580
BsrI	ACTGG	8 cut(s)	178, 1913, 1960, 2140, 2395, 2448, 2611, 3162
BssECI	CCNNGG	5 cut(s)	288, 535, 1092, 2664, 2836
BssHII	GCGCGC	1 cut(s)	2968
BssNAI	GTATAC	1 cut(s)	2547
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	288, 535, 1092
Bst1107I	GTATAC	1 cut(s)	2547
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	1037, 2407, 3043
Bst4CI	ACNGT	5 cut(s)	160, 857, 1778, 2824, 3061
Bst6I	CTCTTC	4 cut(s)	1530, 1597, 3244, 3417
BstAFI	CTTAAG	1 cut(s)	2540
BstAPI	GCANNNNNTGC	2 cut(s)	452, 2536
BstBI	TTCGAA	2 cut(s)	2037, 2818
BstC8I	GCNNGC	4 cut(s)	2348, 2403, 2537, 2970
BstDEI	CTNAG	8 cut(s)	599, 877, 1324, 2779, 3066, 3207, 3321, 3459
BstDSI	CCRYGG	3 cut(s)	535, 1092, 2664
BstEII	GGTNACC	2 cut(s)	2726, 2873
BstENI	CCTNNNNNAGG	1 cut(s)	2243
BstF5I	GGATG	8 cut(s)	141, 748, 772, 1045, 1084, 2832, 3057, 3355
BstFNI	CGCG	2 cut(s)	2698, 2970
BstH2I	RGCGCY	1 cut(s)	3415
BstHHI	GCGC	6 cut(s)	828, 2970, 2972, 3035, 3339, 3414
BstMAI	GTCTC	7 cut(s)	89, 179, 186, 1628, 1693, 1818, 3469
BstMWI	GCNNNNNNNGC	6 cut(s)	452, 461, 2425, 2536, 3179, 3383
BstNI	CCWGG	3 cut(s)	1037, 2407, 3043
BstNSI	RCATGY	6 cut(s)	55, 1457, 2135, 2401, 2539, 2563
BstPI	GGTNACC	2 cut(s)	2726, 2873
BstSCI	CCNGG	6 cut(s)	104, 1035, 2405, 2835, 3041, 3441
BstSFI	CTRYAG	1 cut(s)	3060
BstSLI	GKGCMC	4 cut(s)	111, 416, 2588, 2927
BstUI	CGCG	2 cut(s)	2698, 2970
BstV1I	GCAGC	8 cut(s)	29, 214, 625, 892, 909, 1339, 1960, 2842
BstV2I	GAAGAC	4 cut(s)	214, 1097, 1599, 3179
BstX2I	RGATCY	5 cut(s)	86, 970, 1204, 1391, 2782
BstYI	RGATCY	5 cut(s)	86, 970, 1204, 1391, 2782
BstZ17I	GTATAC	1 cut(s)	2547
Bsu15I	ATCGAT	1 cut(s)	1629
Bsu36I	CCTNAGG	1 cut(s)	3207
BsuI	GTATCC	2 cut(s)	2387, 3205
BsuRI	GGCC	5 cut(s)	109, 121, 363, 2405, 2586
BsuTUI	ATCGAT	1 cut(s)	1629
BtgI	CCRYGG	3 cut(s)	535, 1092, 2664
BtgZI	GCGATG	3 cut(s)	35, 2516, 2679
BtsCI	GGATG	8 cut(s)	141, 748, 772, 1045, 1084, 2832, 3057, 3355
BtsIMutI	CAGTG	6 cut(s)	862, 1953, 2388, 2455, 2833, 3155
BtuMI	TCGCGA	1 cut(s)	2698
BveI	ACCTGC	1 cut(s)	2833
Cac8I	GCNNGC	4 cut(s)	2348, 2403, 2537, 2970
CciI	TCATGA	5 cut(s)	7, 63, 685, 2305, 3271
CfoI	GCGC	6 cut(s)	828, 2970, 2972, 3035, 3339, 3414
Cfr13I	GGNCC	7 cut(s)	107, 108, 119, 281, 362, 2584, 2585
ClaI	ATCGAT	1 cut(s)	1629
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	3176
CspCI	CAANNNNNGTGG	2 cut(s)	2653, 2688
CviQI	GTAC	1 cut(s)	3176
DdeI	CTNAG	8 cut(s)	599, 877, 1324, 2779, 3066, 3207, 3321, 3459
DraI	TTTAAA	2 cut(s)	621, 3196
Eam1104I	CTCTTC	4 cut(s)	1530, 1597, 3244, 3417
EarI	CTCTTC	4 cut(s)	1530, 1597, 3244, 3417
Ecl136II	GAGCTC	1 cut(s)	153
Eco130I	CCWWGG	3 cut(s)	288, 535, 1092
Eco24I	GRGCYC	3 cut(s)	111, 155, 2588
Eco31I	GGTCTC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	1593, 2207
Eco81I	CCTNAGG	1 cut(s)	3207
Eco91I	GGTNACC	2 cut(s)	2726, 2873
EcoICRI	GAGCTC	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	2243
EcoO109I	RGGNCCY	4 cut(s)	108, 362, 2584, 2585
EcoO65I	GGTNACC	2 cut(s)	2726, 2873
EcoRII	CCWGG	3 cut(s)	1035, 2405, 3041
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	3 cut(s)	288, 535, 1092
EcoT22I	ATGCAT	2 cut(s)	2565, 2695
EcoT38I	GRGCYC	3 cut(s)	111, 155, 2588
ErhI	CCWWGG	3 cut(s)	288, 535, 1092
Esp3I	CGTCTC	2 cut(s)	179, 1818
FalI	AAGNNNNNCTT	4 cut(s)	1056, 1088, 3171, 3203
FaqI	GGGAC	2 cut(s)	301, 2296
FauI	CCCGC	1 cut(s)	387
FauNDI	CATATG	1 cut(s)	2089
FbaI	TGATCA	2 cut(s)	309, 1012
FblI	GTMKAC	1 cut(s)	2546
FokI	GGATG	8 cut(s)	128, 735, 759, 1052, 1091, 2819, 3064, 3362
FriOI	GRGCYC	3 cut(s)	111, 155, 2588
FspBI	CTAG	3 cut(s)	785, 1386, 2720
GlaI	GCGC	6 cut(s)	827, 2969, 2971, 3034, 3338, 3413
GsaI	CCCAGC	1 cut(s)	1284
GsuI	CTGGAG	2 cut(s)	161, 2535
HaeII	RGCGCY	1 cut(s)	3415
HaeIII	GGCC	5 cut(s)	109, 121, 363, 2405, 2586
HapII	CCGG	5 cut(s)	105, 2206, 2275, 2836, 3442
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	6 cut(s)	828, 2970, 2972, 3035, 3339, 3414
Hin6I	GCGC	6 cut(s)	826, 2968, 2970, 3033, 3337, 3412
HinP1I	GCGC	6 cut(s)	826, 2968, 2970, 3033, 3337, 3412
HincII	GTYRAC	4 cut(s)	1429, 2179, 3103, 3402
HindII	GTYRAC	4 cut(s)	1429, 2179, 3103, 3402
HindIII	AAGCTT	1 cut(s)	1922
HpaI	GTTAAC	2 cut(s)	1429, 3103
HpaII	CCGG	5 cut(s)	105, 2206, 2275, 2836, 3442
HphI	GGTGA	9 cut(s)	367, 560, 860, 1418, 1970, 2042, 2650, 2857, 3172
Hpy166II	GTNNAC	8 cut(s)	1429, 2179, 2547, 2775, 2897, 2925, 3103, 3402
Hpy8I	GTNNAC	8 cut(s)	1429, 2179, 2547, 2775, 2897, 2925, 3103, 3402
Hpy99I	CGWCG	2 cut(s)	194, 3432
HpyCH4III	ACNGT	5 cut(s)	160, 857, 1778, 2824, 3061
HpyCH4IV	ACGT	2 cut(s)	703, 1378
HpyF10VI	GCNNNNNNNGC	6 cut(s)	452, 461, 2425, 2536, 3179, 3383
HpyF3I	CTNAG	8 cut(s)	599, 877, 1324, 2779, 3066, 3207, 3321, 3459
HpySE526I	ACGT	2 cut(s)	703, 1378
HspAI	GCGC	6 cut(s)	826, 2968, 2970, 3033, 3337, 3412
Kpn2I	TCCGGA	2 cut(s)	2205, 2274
Ksp22I	TGATCA	2 cut(s)	309, 1012
KspAI	GTTAAC	2 cut(s)	1429, 3103
LguI	GCTCTTC	2 cut(s)	3244, 3417
LmnI	GCTCC	4 cut(s)	239, 653, 1141, 3265
Lsp1109I	GCAGC	8 cut(s)	29, 214, 625, 892, 909, 1339, 1960, 2842
LweI	GCATC	9 cut(s)	430, 577, 979, 1339, 1564, 2008, 2539, 2702, 2841
MaeI	CTAG	3 cut(s)	785, 1386, 2720
MaeII	ACGT	2 cut(s)	703, 1378
MaeIII	GTNAC	9 cut(s)	805, 1951, 2030, 2068, 2450, 2483, 2726, 2873, 2951
MfeI	CAATTG	1 cut(s)	3126
MflI	RGATCY	5 cut(s)	86, 970, 1204, 1391, 2782
MhlI	GDGCHC	5 cut(s)	111, 155, 416, 2588, 2927
MlyI	GAGTC	4 cut(s)	1550, 1613, 1682, 2971
MmeI	TCCRAC	3 cut(s)	1119, 2277, 2341
Mph1103I	ATGCAT	2 cut(s)	2565, 2695
MroI	TCCGGA	2 cut(s)	2205, 2274
MslI	CAYNNNNRTG	3 cut(s)	146, 777, 1232
MspA1I	CMGCKG	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	2540
MspI	CCGG	5 cut(s)	105, 2206, 2275, 2836, 3442
MspR9I	CCNGG	6 cut(s)	106, 1037, 2407, 2837, 3043, 3443
MunI	CAATTG	1 cut(s)	3126
Mva1269I	GAATGC	1 cut(s)	1227
MvaI	CCWGG	3 cut(s)	1037, 2407, 3043
MvnI	CGCG	2 cut(s)	2698, 2970
MwoI	GCNNNNNNNGC	6 cut(s)	452, 461, 2425, 2536, 3179, 3383
NciI	CCSGG	3 cut(s)	106, 2837, 3443
NcoI	CCATGG	2 cut(s)	535, 1092
NdeI	CATATG	1 cut(s)	2089
NlaIV	GGNNCC	7 cut(s)	109, 110, 364, 2118, 2585, 2586, 3267
NmuCI	GTSAC	6 cut(s)	805, 1951, 2030, 2068, 2450, 2951
NruI	TCGCGA	1 cut(s)	2698
NsiI	ATGCAT	2 cut(s)	2565, 2695
NspI	RCATGY	6 cut(s)	55, 1457, 2135, 2401, 2539, 2563
NspV	TTCGAA	2 cut(s)	2037, 2818
PaeI	GCATGC	1 cut(s)	2539
PagI	TCATGA	5 cut(s)	7, 63, 685, 2305, 3271
PaqCI	CACCTGC	1 cut(s)	2833
PauI	GCGCGC	1 cut(s)	2968
PciI	ACATGT	2 cut(s)	1453, 2131
PciSI	GCTCTTC	2 cut(s)	3244, 3417
PcsI	WCGNNNNNNNCGW	1 cut(s)	1563
PctI	GAATGC	1 cut(s)	1227
PfeI	GAWTC	9 cut(s)	709, 1184, 1214, 1328, 1382, 1529, 1874, 3110, 3163
PleI	GAGTC	4 cut(s)	1549, 1612, 1681, 2971
PpsI	GAGTC	4 cut(s)	1549, 1612, 1681, 2971
PscI	ACATGT	2 cut(s)	1453, 2131
PsiI	TTATAA	1 cut(s)	2762
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	1035, 2405, 3041
PspEI	GGTNACC	2 cut(s)	2726, 2873
PspFI	CCCAGC	1 cut(s)	1280
PspGI	CCWGG	3 cut(s)	1035, 2405, 3041
PspN4I	GGNNCC	7 cut(s)	109, 110, 364, 2118, 2585, 2586, 3267
PspOMI	GGGCCC	2 cut(s)	107, 2584
PspPI	GGNCC	7 cut(s)	107, 108, 119, 281, 362, 2584, 2585
PsuI	RGATCY	5 cut(s)	86, 970, 1204, 1391, 2782
PteI	GCGCGC	1 cut(s)	2968
RruI	TCGCGA	1 cut(s)	2698
RsaI	GTAC	1 cut(s)	3177
RsaNI	GTAC	1 cut(s)	3176
RseI	CAYNNNNRTG	3 cut(s)	146, 777, 1232
SacI	GAGCTC	1 cut(s)	155
SapI	GCTCTTC	2 cut(s)	3244, 3417
Sau96I	GGNCC	7 cut(s)	107, 108, 119, 281, 362, 2584, 2585
SchI	GAGTC	4 cut(s)	1550, 1613, 1682, 2971
ScrFI	CCNGG	6 cut(s)	106, 1037, 2407, 2837, 3043, 3443
SduI	GDGCHC	5 cut(s)	111, 155, 416, 2588, 2927
SfaNI	GCATC	9 cut(s)	430, 577, 979, 1339, 1564, 2008, 2539, 2702, 2841
SfcI	CTRYAG	1 cut(s)	3060
SfuI	TTCGAA	2 cut(s)	2037, 2818
SinI	GGWCC	1 cut(s)	281
SmiI	ATTTAAAT	1 cut(s)	3196
SmiMI	CAYNNNNRTG	3 cut(s)	146, 777, 1232
SmlI	CTYRAG	5 cut(s)	1073, 2540, 2678, 2979, 3239
SmoI	CTYRAG	5 cut(s)	1073, 2540, 2678, 2979, 3239
SpeI	ACTAGT	1 cut(s)	2719
SphI	GCATGC	1 cut(s)	2539
SsiI	CCGC	7 cut(s)	135, 246, 394, 444, 2169, 2416, 2661
SspI	AATATT	4 cut(s)	1121, 2079, 2333, 3088
SspMI	CTAG	3 cut(s)	785, 1386, 2720
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	6 cut(s)	104, 1035, 2405, 2835, 3041, 3441
StyI	CCWWGG	3 cut(s)	288, 535, 1092
SwaI	ATTTAAAT	1 cut(s)	3196
TaaI	ACNGT	5 cut(s)	160, 857, 1778, 2824, 3061
TaiI	ACGT	2 cut(s)	706, 1381
TaqI	TCGA	9 cut(s)	192, 1629, 1697, 1967, 2037, 2155, 2254, 2797, 2818
TatI	WGTACW	1 cut(s)	3175
TauI	GCSGC	5 cut(s)	138, 249, 446, 2172, 2419
TfiI	GAWTC	9 cut(s)	709, 1184, 1214, 1328, 1382, 1529, 1874, 3110, 3163
TscAI	CASTG	6 cut(s)	862, 1960, 2395, 2455, 2833, 3162
TseFI	GTSAC	6 cut(s)	805, 1951, 2030, 2068, 2450, 2951
TseI	GCWGC	8 cut(s)	17, 202, 613, 905, 922, 1352, 1973, 2855
Tsp45I	GTSAC	6 cut(s)	805, 1951, 2030, 2068, 2450, 2951
TspGWI	ACGGA	4 cut(s)	1702, 1842, 2066, 2070
TspRI	CASTG	6 cut(s)	862, 1960, 2395, 2455, 2833, 3162
Vha464I	CTTAAG	1 cut(s)	2540
VneI	GTGCAC	1 cut(s)	2923
VpaK11BI	GGWCC	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	2243
XapI	RAATTY	6 cut(s)	26, 449, 1883, 2058, 2626, 3282
XceI	RCATGY	6 cut(s)	55, 1457, 2135, 2401, 2539, 2563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2608
XmiI	GTMKAC	1 cut(s)	2546
XspI	CTAG	3 cut(s)	785, 1386, 2720
Zsp2I	ATGCAT	2 cut(s)	2565, 2695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.