Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

10632392 .. 10634902

Gene Structure 2511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGTGCAGCAAGGTATGAAGAGGCTTATGCGGTTGGATTCCTCTGTTGCAGATGTCGGGTGTCACGGCGTCTTGTTGTTGACTGTGGAGTACAGTGGCCGAACCTTGAGGGTTAACTTTTCGGACAAACCTAGAGCGAAAGAACCTCTATATCCAGAAACTGAGTACAAACTTTTTGTTGGGAATTTGTCCTGGTCAGCCACCTCTGAGAGTTTGACAAAAGCTTTCCAAGAATATGGAAATGTAGTCAGCGCCAGGGTTCTATATGATGGGGAGACAGGAAGGTCCCGTGGCTATGGATTCGAACTAGAGGGAAGAGCAATGCGTGTAAGCTTGGCTGAAGGAAAGCGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

119

Amino Acids

13.26

Weight (kDa)

9.13

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	59 - 102	4.1e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	286
AciI	CCGC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	2 cut(s)	95, 170
AjnI	CCWGG	2 cut(s)	194, 257
AluBI	AGCT	2 cut(s)	227, 336
AluI	AGCT	2 cut(s)	227, 336
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	288
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	196, 259
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	135, 311
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	196, 259
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	196, 259
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	258, 292
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	196, 259
BseDI	CCNNGG	2 cut(s)	258, 292
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	156, 201
BseXI	GCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	306
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	157, 202
BspLI	GGNNCC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	313
BspT104I	TTCGAA	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	258, 292
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	196, 259
Bst4CI	ACNGT	2 cut(s)	88, 98
Bst6I	CTCTTC	2 cut(s)	17, 313
BstACI	GRCGYC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	165, 210
BstDSI	CCRYGG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstMAI	GTCTC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	196, 259
BstSCI	CCNGG	2 cut(s)	194, 257
BstV1I	GCAGC	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 103
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	94, 169
CviJI	RGCY	7 cut(s)	28, 102, 203, 227, 297, 336, 341
CviKI_1	RGCY	7 cut(s)	28, 102, 203, 227, 297, 336, 341
CviQI	GTAC	2 cut(s)	94, 169
DdeI	CTNAG	2 cut(s)	165, 210
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	17, 313
EarI	CTCTTC	2 cut(s)	17, 313
Eco47I	GGWCC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	194, 257
FaiI	YATR	8 cut(s)	20, 32, 154, 240, 268, 270, 300, 358
FaqI	GGGAC	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	2 cut(s)	135, 311
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HincII	GTYRAC	2 cut(s)	84, 118
HindII	GTYRAC	2 cut(s)	84, 118
HindIII	AAGCTT	2 cut(s)	225, 334
HinfI	GANTC	2 cut(s)	41, 303
HpaI	GTTAAC	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	84, 118
Hpy188I	TCNGA	2 cut(s)	127, 211
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	84, 118
HpyAV	CCTTC	2 cut(s)	279, 338
HpyCH4III	ACNGT	2 cut(s)	88, 98
HpyCH4V	TGCA	2 cut(s)	10, 53
HpyF3I	CTNAG	2 cut(s)	165, 210
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	1 cut(s)	255
KspAI	GTTAAC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	313
LpnPI	CCDG	6 cut(s)	171, 181, 208, 244, 267, 271
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	135, 311
MaeIII	GTNAC	1 cut(s)	65
MboII	GAAGA	2 cut(s)	34, 330
MluCI	AATT	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	6 cut(s)	18, 55, 105, 159, 217, 307
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	196, 259
MvaI	CCWGG	2 cut(s)	196, 259
NlaIV	GGNNCC	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	41, 303
PkrI	GCNGC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	194, 257
PspGI	CCWGG	2 cut(s)	194, 257
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	288
PspPPI	RGGWCCY	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	95, 170
RsaNI	GTAC	2 cut(s)	94, 169
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	196, 259
SetI	ASST	8 cut(s)	19, 110, 136, 151, 209, 229, 290, 338
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	2 cut(s)	135, 311
StyD4I	CCNGG	2 cut(s)	194, 257
TaaI	ACNGT	2 cut(s)	88, 98
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	187
TatI	WGTACW	2 cut(s)	93, 168
TfiI	GAWTC	2 cut(s)	41, 303
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	12, 103
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	35, 345
TspRI	CASTG	2 cut(s)	12, 103
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	2 cut(s)	135, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.