Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

22560751 .. 22571817

Gene Structure 11067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3504 bp

ATGGGCATGATAGATAGTGGAAGCATGGAGCAGTCACACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGCCCCAAAAAGATTCGAAGAAGCAAAACCCCAAGGCTTTCGCTTTCAGCTCAACTGTCAAGGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAGGAGCAGCGAAGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTTGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGACGTTAAGGGCCCGATTACCATAGTAACAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGCATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGACGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCACAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGGTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTTGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCGATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAAGATGAAAAGGAGGAAGCAACAAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAACGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGCATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGACGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATCCATGAGACAGATGATGATGCGGGAAACATAGCAAAGTGGAAAGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCGGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGATGAGGAAAGTGACGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGACTCTTCCAAATTTACAAATCATTCAATCAAAGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGTGATCGCTTTGTCACTGGTGATTGGTCAAAGGCTGCTAAAAGAAATCAAGACACAGAGGCCACATTTGAAGATGAGGATGCTGTCTTTGGTGACTTTGAAGATTTAGAAACGGGTGAGAAGCATGATGGATATCATACAAATGAGACTAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCAGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCTGAACTCAATGACCTTGATGAGGGCACCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTGATCCCTGCCATCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAACCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTACACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACCGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCACGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCAGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAATCAACCAAAAAAGAAGGGTGGACAACCAAGAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGACGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGTGATCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTTAACCCGTTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAAGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGGTATTTAGACTAATATTGTCTTCCCAAACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1167

Amino Acids

133.45

Weight (kDa)

6.99

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	240 - 313	3e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	725 - 1043	6.5e-86	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2903
AarI	CACCTGC	2 cut(s)	881, 2974
Acc36I	ACCTGC	2 cut(s)	881, 2974
AccB1I	GGYRCC	1 cut(s)	2390
AccBSI	CCGCTC	1 cut(s)	2185
AccII	CGCG	2 cut(s)	2839, 3111
AccIII	TCCGGA	2 cut(s)	2346, 2415
AciI	CCGC	7 cut(s)	370, 420, 850, 1703, 2185, 2557, 2802
AclI	AACGTT	1 cut(s)	1356
AclWI	GGATC	5 cut(s)	929, 1029, 1450, 2474, 2804
AcsI	RAATTY	4 cut(s)	425, 1934, 2767, 3423
AcuI	CTGAAG	3 cut(s)	1647, 2348, 2937
AfaI	GTAC	2 cut(s)	2687, 3318
AflII	CTTAAG	1 cut(s)	2681
AflIII	ACRYGT	2 cut(s)	1507, 2272
AgeI	ACCGGT	1 cut(s)	2747
AhlI	ACTAGT	1 cut(s)	2860
AjnI	CCWGG	2 cut(s)	2546, 3182
AjuI	GAANNNNNNNTTGG	6 cut(s)	1214, 1246, 1296, 1328, 1715, 1747
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
Alw21I	GWGCWC	1 cut(s)	3068
Alw26I	GTCTC	6 cut(s)	161, 168, 1682, 1747, 1869, 2129
Alw44I	GTGCAC	1 cut(s)	3064
AlwI	GGATC	5 cut(s)	929, 1029, 1450, 2474, 2804
Aor13HI	TCCGGA	2 cut(s)	2346, 2415
AoxI	GGCC	6 cut(s)	72, 147, 337, 2049, 2544, 2725
ApaI	GGGCCC	2 cut(s)	341, 2729
ApaLI	GTGCAC	1 cut(s)	3064
ApeKI	GCWGC	8 cut(s)	184, 589, 956, 973, 1403, 2024, 2310, 2996
ApoI	RAATTY	4 cut(s)	425, 1934, 2767, 3423
ArsI	GACNNNNNNTTYG	2 cut(s)	1029, 1061
AsiGI	ACCGGT	1 cut(s)	2747
AspLEI	GCGC	3 cut(s)	804, 3111, 3113
AspS9I	GGNCC	6 cut(s)	51, 257, 337, 338, 2725, 2726
AsuC2I	CCSGG	2 cut(s)	55, 2978
AsuHPI	GGTGA	9 cut(s)	536, 911, 1472, 2021, 2093, 2117, 2791, 2998, 3313
AsuII	TTCGAA	2 cut(s)	101, 2959
AvaII	GGWCC	2 cut(s)	51, 257
AxyI	CCTNAGG	1 cut(s)	3348
BaeGI	GKGCMC	5 cut(s)	341, 392, 2393, 2729, 3068
BaeI	ACNNNNGTAYC	2 cut(s)	2259, 2292
BanI	GGYRCC	1 cut(s)	2390
BanII	GRGCYC	2 cut(s)	341, 2729
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	5 cut(s)	196, 1148, 1653, 3320, 3480
Bbv12I	GWGCWC	1 cut(s)	3068
BbvI	GCAGC	8 cut(s)	196, 601, 943, 960, 1390, 2011, 2322, 2983
BccI	CCATC	9 cut(s)	620, 732, 1364, 1517, 2111, 2458, 2496, 2559, 2606
BceAI	ACGGC	3 cut(s)	155, 238, 2823
BcgI	CGANNNNNNTGC	2 cut(s)	1610, 1644
BciT130I	CCWGG	2 cut(s)	2548, 3184
BciVI	GTATCC	2 cut(s)	2528, 3346
BclI	TGATCA	2 cut(s)	285, 1063
BcnI	CCSGG	2 cut(s)	55, 2978
BcoDI	GTCTC	6 cut(s)	161, 168, 1682, 1747, 1869, 2129
BcuI	ACTAGT	1 cut(s)	2860
BfaI	CTAG	4 cut(s)	761, 1437, 2139, 2861
BfmI	CTRYAG	1 cut(s)	3201
BfrI	CTTAAG	1 cut(s)	2681
BfuAI	ACCTGC	2 cut(s)	881, 2974
BfuI	GTATCC	2 cut(s)	2528, 3346
BglII	AGATCT	2 cut(s)	1255, 2923
BlpI	GCTNAGC	1 cut(s)	928
Bme1390I	CCNGG	4 cut(s)	55, 2548, 2978, 3184
Bme18I	GGWCC	2 cut(s)	51, 257
BmgT120I	GGNCC	6 cut(s)	51, 257, 337, 338, 2725, 2726
BmiI	GGNNCC	8 cut(s)	53, 67, 339, 2259, 2392, 2726, 2727, 3408
BmrFI	CCNGG	4 cut(s)	55, 2548, 2978, 3184
BpiI	GAAGAC	5 cut(s)	196, 1148, 1653, 3320, 3480
BplI	GAGNNNNNCTC	4 cut(s)	730, 762, 3394, 3426
BpmI	CTGGAG	2 cut(s)	143, 2676
Bpu1102I	GCTNAGC	1 cut(s)	928
Bpu14I	TTCGAA	2 cut(s)	101, 2959
BpuEI	CTTGAG	3 cut(s)	1145, 2840, 3105
BpuMI	CCSGG	2 cut(s)	55, 2978
BsaBI	GATNNNNATC	1 cut(s)	2121
BsaJI	CCNNGG	8 cut(s)	69, 117, 253, 264, 511, 1143, 2805, 2977
BsaWI	WCCGGW	3 cut(s)	2346, 2415, 2747
Bse118I	RCCGGY	1 cut(s)	2747
Bse1I	ACTGG	6 cut(s)	160, 1964, 2011, 2281, 2536, 2589
Bse21I	CCTNAGG	1 cut(s)	3348
Bse3DI	GCAATG	4 cut(s)	440, 2668, 2704, 2721
Bse8I	GATNNNNATC	1 cut(s)	2121
BseAI	TCCGGA	2 cut(s)	2346, 2415
BseBI	CCWGG	2 cut(s)	2548, 3184
BseDI	CCNNGG	8 cut(s)	69, 117, 253, 264, 511, 1143, 2805, 2977
BseGI	GGATG	7 cut(s)	724, 748, 1135, 2074, 2488, 2973, 3198
BseJI	GATNNNNATC	1 cut(s)	2121
BseMI	GCAATG	4 cut(s)	440, 2668, 2704, 2721
BseMII	CTCAG	5 cut(s)	566, 1389, 2934, 3198, 3453
BseNI	ACTGG	6 cut(s)	160, 1964, 2011, 2281, 2536, 2589
BsePI	GCGCGC	1 cut(s)	3109
BseRI	GAGGAG	5 cut(s)	1607, 2195, 2267, 2348, 3229
BseSI	GKGCMC	5 cut(s)	341, 392, 2393, 2729, 3068
BseXI	GCAGC	8 cut(s)	196, 601, 943, 960, 1390, 2011, 2322, 2983
BseYI	CCCAGC	1 cut(s)	1331
Bsh1236I	CGCG	2 cut(s)	2839, 3111
BshFI	GGCC	6 cut(s)	74, 149, 339, 2051, 2546, 2727
BshNI	GGYRCC	1 cut(s)	2390
BshTI	ACCGGT	1 cut(s)	2747
BsiHKAI	GWGCWC	1 cut(s)	3068
BsiSI	CCGG	5 cut(s)	55, 2347, 2416, 2748, 2977
BslFI	GGGAC	4 cut(s)	37, 277, 341, 2437
BsmAI	GTCTC	6 cut(s)	161, 168, 1682, 1747, 1869, 2129
BsmBI	CGTCTC	2 cut(s)	161, 1869
BsmFI	GGGAC	4 cut(s)	37, 277, 341, 2437
BsmI	GAATGC	1 cut(s)	1278
BsnI	GGCC	6 cut(s)	74, 149, 339, 2051, 2546, 2727
Bsp119I	TTCGAA	2 cut(s)	101, 2959
Bsp120I	GGGCCC	2 cut(s)	337, 2725
Bsp1286I	GDGCHC	5 cut(s)	341, 392, 2393, 2729, 3068
Bsp13I	TCCGGA	2 cut(s)	2346, 2415
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	3 cut(s)	253, 511, 1143
Bsp68I	TCGCGA	1 cut(s)	2839
BspACI	CCGC	7 cut(s)	370, 420, 850, 1703, 2185, 2557, 2802
BspANI	GGCC	6 cut(s)	74, 149, 339, 2051, 2546, 2727
BspCNI	CTCAG	5 cut(s)	567, 1388, 2933, 3199, 3454
BspEI	TCCGGA	2 cut(s)	2346, 2415
BspFNI	CGCG	2 cut(s)	2839, 3111
BspHI	TCATGA	4 cut(s)	661, 1519, 2446, 3412
BspLI	GGNNCC	8 cut(s)	53, 67, 339, 2259, 2392, 2726, 2727, 3408
BspMI	ACCTGC	2 cut(s)	881, 2974
BspPI	GGATC	5 cut(s)	929, 1029, 1450, 2474, 2804
BspQI	GCTCTTC	2 cut(s)	2211, 3385
BspT104I	TTCGAA	2 cut(s)	101, 2959
BspT107I	GGYRCC	1 cut(s)	2390
BspTI	CTTAAG	1 cut(s)	2681
BsrBI	CCGCTC	1 cut(s)	2185
BsrDI	GCAATG	4 cut(s)	440, 2668, 2704, 2721
BsrFI	RCCGGY	1 cut(s)	2747
BsrI	ACTGG	6 cut(s)	160, 1964, 2011, 2281, 2536, 2589
BssAI	RCCGGY	1 cut(s)	2747
BssECI	CCNNGG	8 cut(s)	69, 117, 253, 264, 511, 1143, 2805, 2977
BssHII	GCGCGC	1 cut(s)	3109
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	2548, 3184
Bst4CI	ACNGT	6 cut(s)	142, 908, 1616, 1829, 2965, 3202
Bst6I	CTCTTC	6 cut(s)	1584, 1651, 1933, 2172, 2211, 3385
BstAFI	CTTAAG	1 cut(s)	2681
BstAPI	GCANNNNNTGC	2 cut(s)	428, 2677
BstBI	TTCGAA	2 cut(s)	101, 2959
BstC8I	GCNNGC	5 cut(s)	2167, 2202, 2544, 2678, 3111
BstDEI	CTNAG	8 cut(s)	575, 928, 1375, 2170, 2920, 3207, 3348, 3462
BstDSI	CCRYGG	4 cut(s)	253, 511, 1143, 2805
BstEII	GGTNACC	1 cut(s)	2867
BstENI	CCTNNNNNAGG	1 cut(s)	2384
BstF5I	GGATG	7 cut(s)	724, 748, 1135, 2074, 2488, 2973, 3198
BstFNI	CGCG	2 cut(s)	2839, 3111
BstHHI	GCGC	3 cut(s)	804, 3111, 3113
BstMAI	GTCTC	6 cut(s)	161, 168, 1682, 1747, 1869, 2129
BstMWI	GCNNNNNNNGC	8 cut(s)	222, 428, 437, 2197, 2210, 2566, 2677, 3320
BstNI	CCWGG	2 cut(s)	2548, 3184
BstNSI	RCATGY	5 cut(s)	1511, 2276, 2542, 2680, 2704
BstPI	GGTNACC	1 cut(s)	2867
BstSCI	CCNGG	4 cut(s)	53, 2546, 2976, 3182
BstSFI	CTRYAG	1 cut(s)	3201
BstSLI	GKGCMC	5 cut(s)	341, 392, 2393, 2729, 3068
BstUI	CGCG	2 cut(s)	2839, 3111
BstV1I	GCAGC	8 cut(s)	196, 601, 943, 960, 1390, 2011, 2322, 2983
BstV2I	GAAGAC	5 cut(s)	196, 1148, 1653, 3320, 3480
BstX2I	RGATCY	4 cut(s)	1021, 1255, 1442, 2923
BstYI	RGATCY	4 cut(s)	1021, 1255, 1442, 2923
Bsu36I	CCTNAGG	1 cut(s)	3348
BsuI	GTATCC	2 cut(s)	2528, 3346
BsuRI	GGCC	6 cut(s)	74, 149, 339, 2051, 2546, 2727
BtgI	CCRYGG	4 cut(s)	253, 511, 1143, 2805
BtgZI	GCGATG	2 cut(s)	2657, 2820
BtsCI	GGATG	7 cut(s)	724, 748, 1135, 2074, 2488, 2973, 3198
BtsIMutI	CAGTG	5 cut(s)	913, 2004, 2529, 2596, 2974
BtuMI	TCGCGA	1 cut(s)	2839
BveI	ACCTGC	2 cut(s)	881, 2974
Cac8I	GCNNGC	5 cut(s)	2167, 2202, 2544, 2678, 3111
CciI	TCATGA	4 cut(s)	661, 1519, 2446, 3412
CfoI	GCGC	3 cut(s)	804, 3111, 3113
Cfr10I	RCCGGY	1 cut(s)	2747
Cfr13I	GGNCC	6 cut(s)	51, 257, 337, 338, 2725, 2726
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	2686, 3317
CspAI	ACCGGT	1 cut(s)	2747
CspCI	CAANNNNNGTGG	2 cut(s)	2794, 2829
CviQI	GTAC	2 cut(s)	2686, 3317
DdeI	CTNAG	8 cut(s)	575, 928, 1375, 2170, 2920, 3207, 3348, 3462
DraI	TTTAAA	2 cut(s)	597, 3337
Eam1104I	CTCTTC	6 cut(s)	1584, 1651, 1933, 2172, 2211, 3385
EarI	CTCTTC	6 cut(s)	1584, 1651, 1933, 2172, 2211, 3385
Eco130I	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
Eco24I	GRGCYC	2 cut(s)	341, 2729
Eco32I	GATATC	2 cut(s)	400, 2123
Eco47I	GGWCC	2 cut(s)	51, 257
Eco57I	CTGAAG	3 cut(s)	1647, 2348, 2937
Eco81I	CCTNAGG	1 cut(s)	3348
Eco91I	GGTNACC	1 cut(s)	2867
EcoNI	CCTNNNNNAGG	1 cut(s)	2384
EcoO109I	RGGNCCY	4 cut(s)	51, 337, 2725, 2726
EcoO65I	GGTNACC	1 cut(s)	2867
EcoRII	CCWGG	2 cut(s)	2546, 3182
EcoRV	GATATC	2 cut(s)	400, 2123
EcoT14I	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
EcoT22I	ATGCAT	2 cut(s)	1468, 2706
EcoT38I	GRGCYC	2 cut(s)	341, 2729
ErhI	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
Esp3I	CGTCTC	2 cut(s)	161, 1869
FalI	AAGNNNNNCTT	4 cut(s)	1107, 1139, 3312, 3344
FaqI	GGGAC	4 cut(s)	37, 277, 341, 2437
FauI	CCCGC	3 cut(s)	363, 843, 1696
FbaI	TGATCA	2 cut(s)	285, 1063
FokI	GGATG	7 cut(s)	711, 735, 1142, 2081, 2475, 2960, 3205
FriOI	GRGCYC	2 cut(s)	341, 2729
FspBI	CTAG	4 cut(s)	761, 1437, 2139, 2861
GlaI	GCGC	3 cut(s)	803, 3110, 3112
GsaI	CCCAGC	1 cut(s)	1335
GsuI	CTGGAG	2 cut(s)	143, 2676
HaeIII	GGCC	6 cut(s)	74, 149, 339, 2051, 2546, 2727
HapII	CCGG	5 cut(s)	55, 2347, 2416, 2748, 2977
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	3 cut(s)	804, 3111, 3113
Hin6I	GCGC	3 cut(s)	802, 3109, 3111
HinP1I	GCGC	3 cut(s)	802, 3109, 3111
HincII	GTYRAC	4 cut(s)	1483, 2320, 3127, 3244
HindII	GTYRAC	4 cut(s)	1483, 2320, 3127, 3244
HindIII	AAGCTT	2 cut(s)	1973, 2198
HpaI	GTTAAC	2 cut(s)	1483, 3244
HpaII	CCGG	5 cut(s)	55, 2347, 2416, 2748, 2977
HphI	GGTGA	9 cut(s)	536, 911, 1472, 2021, 2093, 2117, 2791, 2998, 3313
Hpy166II	GTNNAC	9 cut(s)	558, 1483, 2320, 2688, 2916, 3038, 3066, 3127, 3244
Hpy8I	GTNNAC	9 cut(s)	558, 1483, 2320, 2688, 2916, 3038, 3066, 3127, 3244
Hpy99I	CGWCG	2 cut(s)	176, 1616
HpyCH4III	ACNGT	6 cut(s)	142, 908, 1616, 1829, 2965, 3202
HpyCH4IV	ACGT	4 cut(s)	330, 679, 1356, 3129
HpyF10VI	GCNNNNNNNGC	8 cut(s)	222, 428, 437, 2197, 2210, 2566, 2677, 3320
HpyF3I	CTNAG	8 cut(s)	575, 928, 1375, 2170, 2920, 3207, 3348, 3462
HpySE526I	ACGT	4 cut(s)	330, 679, 1356, 3129
HspAI	GCGC	3 cut(s)	802, 3109, 3111
Kpn2I	TCCGGA	2 cut(s)	2346, 2415
Ksp22I	TGATCA	2 cut(s)	285, 1063
KspAI	GTTAAC	2 cut(s)	1483, 3244
LguI	GCTCTTC	2 cut(s)	2211, 3385
LmnI	GCTCC	7 cut(s)	28, 181, 221, 629, 1192, 2182, 3406
Lsp1109I	GCAGC	8 cut(s)	196, 601, 943, 960, 1390, 2011, 2322, 2983
MaeI	CTAG	4 cut(s)	761, 1437, 2139, 2861
MaeII	ACGT	4 cut(s)	330, 679, 1356, 3129
MbiI	CCGCTC	1 cut(s)	2185
MfeI	CAATTG	1 cut(s)	3267
MflI	RGATCY	4 cut(s)	1021, 1255, 1442, 2923
MhlI	GDGCHC	5 cut(s)	341, 392, 2393, 2729, 3068
MlyI	GAGTC	5 cut(s)	1604, 1667, 1736, 1919, 3112
MmeI	TCCRAC	4 cut(s)	227, 1170, 2418, 2482
Mph1103I	ATGCAT	2 cut(s)	1468, 2706
MroI	TCCGGA	2 cut(s)	2346, 2415
MslI	CAYNNNNRTG	3 cut(s)	753, 1283, 2130
MspCI	CTTAAG	1 cut(s)	2681
MspI	CCGG	5 cut(s)	55, 2347, 2416, 2748, 2977
MspR9I	CCNGG	4 cut(s)	55, 2548, 2978, 3184
MunI	CAATTG	1 cut(s)	3267
Mva1269I	GAATGC	1 cut(s)	1278
MvaI	CCWGG	2 cut(s)	2548, 3184
MvnI	CGCG	2 cut(s)	2839, 3111
MwoI	GCNNNNNNNGC	8 cut(s)	222, 428, 437, 2197, 2210, 2566, 2677, 3320
NciI	CCSGG	2 cut(s)	55, 2978
NcoI	CCATGG	3 cut(s)	253, 511, 1143
NlaIV	GGNNCC	8 cut(s)	53, 67, 339, 2259, 2392, 2726, 2727, 3408
NmuCI	GTSAC	9 cut(s)	33, 781, 829, 1138, 1844, 2002, 2081, 2591, 3092
NruI	TCGCGA	1 cut(s)	2839
NsiI	ATGCAT	2 cut(s)	1468, 2706
NspI	RCATGY	5 cut(s)	1511, 2276, 2542, 2680, 2704
NspV	TTCGAA	2 cut(s)	101, 2959
PaeI	GCATGC	1 cut(s)	2680
PagI	TCATGA	4 cut(s)	661, 1519, 2446, 3412
PaqCI	CACCTGC	2 cut(s)	881, 2974
PauI	GCGCGC	1 cut(s)	3109
PciI	ACATGT	2 cut(s)	1507, 2272
PciSI	GCTCTTC	2 cut(s)	2211, 3385
PcsI	WCGNNNNNNNCGW	1 cut(s)	1617
PctI	GAATGC	1 cut(s)	1278
PinAI	ACCGGT	1 cut(s)	2747
PleI	GAGTC	5 cut(s)	1603, 1666, 1735, 1919, 3112
PpsI	GAGTC	5 cut(s)	1603, 1666, 1735, 1919, 3112
PpuMI	RGGWCCY	1 cut(s)	51
PscI	ACATGT	2 cut(s)	1507, 2272
PsiI	TTATAA	1 cut(s)	2903
Psp1406I	AACGTT	1 cut(s)	1356
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	2546, 3182
PspEI	GGTNACC	1 cut(s)	2867
PspFI	CCCAGC	1 cut(s)	1331
PspGI	CCWGG	2 cut(s)	2546, 3182
PspN4I	GGNNCC	8 cut(s)	53, 67, 339, 2259, 2392, 2726, 2727, 3408
PspOMI	GGGCCC	2 cut(s)	337, 2725
PspPI	GGNCC	6 cut(s)	51, 257, 337, 338, 2725, 2726
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	4 cut(s)	1021, 1255, 1442, 2923
PteI	GCGCGC	1 cut(s)	3109
RruI	TCGCGA	1 cut(s)	2839
RsaI	GTAC	2 cut(s)	2687, 3318
RsaNI	GTAC	2 cut(s)	2686, 3317
RseI	CAYNNNNRTG	3 cut(s)	753, 1283, 2130
SapI	GCTCTTC	2 cut(s)	2211, 3385
Sau96I	GGNCC	6 cut(s)	51, 257, 337, 338, 2725, 2726
SchI	GAGTC	5 cut(s)	1604, 1667, 1736, 1919, 3112
ScrFI	CCNGG	4 cut(s)	55, 2548, 2978, 3184
SduI	GDGCHC	5 cut(s)	341, 392, 2393, 2729, 3068
SfcI	CTRYAG	1 cut(s)	3201
SfuI	TTCGAA	2 cut(s)	101, 2959
SinI	GGWCC	2 cut(s)	51, 257
SmiI	ATTTAAAT	1 cut(s)	3337
SmiMI	CAYNNNNRTG	3 cut(s)	753, 1283, 2130
SmlI	CTYRAG	4 cut(s)	1124, 2681, 2819, 3120
SmoI	CTYRAG	4 cut(s)	1124, 2681, 2819, 3120
SpeI	ACTAGT	1 cut(s)	2860
SphI	GCATGC	1 cut(s)	2680
SsiI	CCGC	7 cut(s)	370, 420, 850, 1703, 2185, 2557, 2802
SspI	AATATT	4 cut(s)	1172, 2474, 3229, 3483
SspMI	CTAG	4 cut(s)	761, 1437, 2139, 2861
StyD4I	CCNGG	4 cut(s)	53, 2546, 2976, 3182
StyI	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
SwaI	ATTTAAAT	1 cut(s)	3337
TaaI	ACNGT	6 cut(s)	142, 908, 1616, 1829, 2965, 3202
TaiI	ACGT	4 cut(s)	333, 682, 1359, 3132
TaqI	TCGA	6 cut(s)	101, 174, 1751, 2296, 2938, 2959
TatI	WGTACW	2 cut(s)	2685, 3316
TauI	GCSGC	2 cut(s)	422, 2560
TscAI	CASTG	5 cut(s)	913, 2011, 2536, 2596, 2974
TseFI	GTSAC	9 cut(s)	33, 781, 829, 1138, 1844, 2002, 2081, 2591, 3092
TseI	GCWGC	8 cut(s)	184, 589, 956, 973, 1403, 2024, 2310, 2996
Tsp45I	GTSAC	9 cut(s)	33, 781, 829, 1138, 1844, 2002, 2081, 2591, 3092
TspGWI	ACGGA	4 cut(s)	471, 1756, 1863, 1893
TspRI	CASTG	5 cut(s)	913, 2011, 2536, 2596, 2974
Vha464I	CTTAAG	1 cut(s)	2681
VneI	GTGCAC	1 cut(s)	3064
VpaK11BI	GGWCC	2 cut(s)	51, 257
XagI	CCTNNNNNAGG	1 cut(s)	2384
XapI	RAATTY	4 cut(s)	425, 1934, 2767, 3423
XceI	RCATGY	5 cut(s)	1511, 2276, 2542, 2680, 2704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2749
XspI	CTAG	4 cut(s)	761, 1437, 2139, 2861
Zsp2I	ATGCAT	2 cut(s)	1468, 2706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.