Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

15154246 .. 15156165

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGGAGAACAAAAAGTGTATAGTGATGCAGATCATATACTTTCTTGGCTCTAGTTGCATGTTTTACTTGTCACTAGCAGTTGCCGTCGAAAATGTGGCAGTACTGGAACCACTAGCTGAGACAAATAGCATGCAAACTTATATAGTTTGGGTTGAAAAGCCACCCAGCATTTTCCTTGCACAATCTGATCATGAAGATTTAGAGAGTTGGTACCAGTCATTTCTGCCCCAAACAATTGCAAACTCAAACCAGCTTATGAAGCCACGAATGGTTTATGCATACCGCAATGTGGCCACTGGATTTGCAGCAAAGCTGACCGCAGAGGAAGTTGAAGAAATGGAGAAGAAAGATGGGTTTATCTCGGCTCATCCAGAACGGAATCTGCAATTGCACACAACACATAGTCCTAACTTCTTGGGGCTGCAACAAGGATTGGGACTTTGGAAAGGGTCAAATTATGGTGAAGGAGTGATTATTGGACTTTTGGATACTGGGATATTCCCAGACCATCCTTCATTTAGTGATGAAGGAGTACCACCTCCTCCAGCTAAATGGAAAGGCAAGTGTGATTTCCGCGGGACAGTCTGCAATAACAAGCTTATCGACGCCAGAAGTTTTGATGGTGGAAAGACTACAGGAGGCCCTCCAATTGACGATGCAGGCCATGGAACTCACACTTCAAGCACAGCTGGAGGAAACTTTGTGAAAGGTGCTGAAGTGTTTGGAATGGCCACCGGCACAGCAACTGGCATGGCACCTCATGCTCACTTGGCAATGTACAAAGTCTGCTCTGAACAGGGTTGTTTTGACTCGGACATTCTAGCTGCTATGGACACTGCGGTTGATGATGGTGTGGATGTGCTATCGCTCTCACTTGGAGGTGGCTCAGGTTATTTTTATGCTGATGGAATTGCAGTCGGTGCATTTGGAGCAATTCAGAAGGGAATTTTTGTCAGCTGTTCGGCTGGAAATGAGGGACCTGACTACAATACTTTATCAAATGAGGCCCCATGGATTCTCACAGTTGGAGCAAGCACCATTGACAGAAGCATAAGAGCAACAGCAAAGCTTGGAAATGGGCAAGAATATGACGGGGAGTCAGTATTCCAGCCTAAAGATTTTAGTTCAAAACAGTTACCTCTTGTTTATGCAGGTGCACATAGAAATGATTCATCAGCTCTTTGCGATGTAGGGTCCCTTAAAAATGTTGAAGGGAAAGTAGTGGTGTGTGAGCTAGGTGGCGGAATTGGAAGAATTGCAAAAGGGGTAGAAGTGAAAAGAGCTGGTGGTGTTGCCATGATTCTTGTCAACCCAGACTTCGCTGGCTATACCACCATAGCAGACGCTCACGTGCTTCCTGCAACACATGTGAGTTACTCTGCAGGGGTGAGCATCAAAACCTATATAAACTCAACCTCAACTCCTACAGCAACAATCTTTTTCAAAGGCACTGTCATTGGTGATCAGCTTGCTCCGAGGGTCTCTTTCTTTTCATCGAGAGGACCAAGCCTCGCAAGTCCTGGCATTTTGAAACCTGACATTATTGGTCCCGGTGTGAGCATCCTAGCTGCATGGCCTTTTTCGGTGGACAATGCCACAGAATCTAAAGCCACATTTAACATTATTTCCGGTACTTCAATGTCATGCCCTCACCTAAGTGGCATTGGAGCCTTGCTCAAGAGCTCACACCCTGACTGGTCACCAGCTGCCATTAAGTCTGCCATCATGACAACTGCTGAAGTAAACAACCTCGCAGGGTCCACCATAATGGATGAAACACTTTTTGCAGCAGACCTCTTTGCCATTGGTGCAGGTCATGTTAACCCTTCAAAAGCAAATGACCCTGGGCTCATCTACGACACGCAACCAGAGGAGTTGTTTGGCTCCAAAACCAGTCGGCTTGCAAACTGTCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

639

Amino Acids

67.39

Weight (kDa)

5.23

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	46 - 131	3.3e-11	Peptidase inhibitor I9
Peptidase_S8	PF00082	154 - 582	2.7e-45	Subtilase family
PA	PF02225	378 - 464	4.3e-11	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1142
Acc36I	ACCTGC	2 cut(s)	1142, 1802
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	2 cut(s)	210, 754
AccII	CGCG	1 cut(s)	576
AciI	CCGC	6 cut(s)	283, 318, 574, 576, 839, 1242
AcoI	YGGCCR	2 cut(s)	291, 729
AcsI	RAATTY	1 cut(s)	945
AcuI	CTGAAG	2 cut(s)	735, 1758
AcvI	CACGTG	1 cut(s)	1351
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	5 cut(s)	102, 212, 534, 779, 1633
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	1366
AgsI	TTSAA	9 cut(s)	155, 332, 681, 1128, 1211, 1444, 1531, 1638, 1830
AhdI	GACNNNNNGTC	1 cut(s)	1096
AjnI	CCWGG	2 cut(s)	1519, 1843
AleI	CACNNNNGTG	1 cut(s)	1656
Alw21I	GWGCWC	2 cut(s)	1159, 1685
Alw26I	GTCTC	3 cut(s)	113, 1486, 1916
Alw44I	GTGCAC	1 cut(s)	1155
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	6 cut(s)	291, 640, 661, 729, 1005, 1574
ApaLI	GTGCAC	1 cut(s)	1155
ApeKI	GCWGC	6 cut(s)	305, 421, 824, 1568, 1706, 1787
ApoI	RAATTY	1 cut(s)	945
ArsI	GACNNNNNNTTYG	2 cut(s)	1437, 1469
Asp700I	GAANNNNTTC	1 cut(s)	1168
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	7 cut(s)	641, 977, 1006, 1194, 1502, 1547, 1758
AsuC2I	CCSGG	1 cut(s)	1551
AsuHPI	GGTGA	5 cut(s)	473, 1399, 1472, 1643, 1692
AvaII	GGWCC	5 cut(s)	977, 1194, 1502, 1547, 1758
BaeGI	GKGCMC	1 cut(s)	1159
BalI	TGGCCA	2 cut(s)	293, 731
BanI	GGYRCC	2 cut(s)	210, 754
BanII	GRGCYC	2 cut(s)	1685, 1851
BbrPI	CACGTG	1 cut(s)	1351
Bbv12I	GWGCWC	2 cut(s)	1159, 1685
BbvI	GCAGC	6 cut(s)	317, 408, 811, 1555, 1693, 1799
BccI	CCATC	6 cut(s)	344, 516, 614, 842, 899, 1730
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	1521, 1845
BciVI	GTATCC	1 cut(s)	481
BclI	TGATCA	2 cut(s)	187, 1462
BcnI	CCSGG	1 cut(s)	1551
BcoDI	GTCTC	3 cut(s)	113, 1486, 1916
BfaI	CTAG	6 cut(s)	51, 74, 113, 821, 1235, 1565
BfmI	CTRYAG	3 cut(s)	633, 1380, 1425
BfuAI	ACCTGC	2 cut(s)	1142, 1802
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	6 cut(s)	306, 422, 825, 1569, 1707, 1788
BlsI	GCNGC	6 cut(s)	307, 423, 826, 1570, 1708, 1789
BmcAI	AGTACT	1 cut(s)	102
Bme1390I	CCNGG	3 cut(s)	1521, 1551, 1845
Bme18I	GGWCC	5 cut(s)	977, 1194, 1502, 1547, 1758
BmeRI	GACNNNNNGTC	1 cut(s)	1096
BmgT120I	GGNCC	7 cut(s)	641, 977, 1006, 1194, 1502, 1547, 1758
BmrFI	CCNGG	3 cut(s)	1521, 1551, 1845
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	4 cut(s)	15, 646, 1401, 1569
BmuI	ACTGGG	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	1659, 1691
BpmI	CTGGAG	2 cut(s)	528, 711
Bpu10I	CCTNAGC	1 cut(s)	886
BpuEI	CTTGAG	1 cut(s)	1661
BpuMI	CCSGG	1 cut(s)	1551
BsaAI	YACGTR	1 cut(s)	1351
BsaBI	GATNNNNATC	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	1486
BsaJI	CCNNGG	6 cut(s)	574, 664, 1010, 1475, 1843, 1844
BsaWI	WCCGGW	1 cut(s)	1628
BsaXI	ACNNNNNCTCC	2 cut(s)	1405, 1435
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse118I	RCCGGY	1 cut(s)	734
Bse1I	ACTGG	7 cut(s)	108, 214, 301, 496, 751, 1700, 1893
Bse3DI	GCAATG	2 cut(s)	292, 780
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	1521, 1845
BseDI	CCNNGG	6 cut(s)	574, 664, 1010, 1475, 1843, 1844
BseGI	GGATG	5 cut(s)	367, 508, 862, 1560, 1777
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	292, 780
BseMII	CTCAG	2 cut(s)	108, 900
BseNI	ACTGG	7 cut(s)	108, 214, 301, 496, 751, 1700, 1893
BseRI	GAGGAG	2 cut(s)	531, 1886
BseSI	GKGCMC	1 cut(s)	1159
BseXI	GCAGC	6 cut(s)	317, 408, 811, 1555, 1693, 1799
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	1830
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	6 cut(s)	293, 642, 663, 731, 1007, 1576
BshNI	GGYRCC	2 cut(s)	210, 754
BsiHKAI	GWGCWC	2 cut(s)	1159, 1685
BsiSI	CCGG	3 cut(s)	735, 1551, 1629
BslFI	GGGAC	5 cut(s)	450, 592, 990, 1180, 1533
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	113, 1486, 1916
BsmFI	GGGAC	5 cut(s)	450, 592, 990, 1180, 1533
BsnI	GGCC	6 cut(s)	293, 642, 663, 731, 1007, 1576
Bso31I	GGTCTC	1 cut(s)	1486
Bsp1286I	GDGCHC	3 cut(s)	1159, 1685, 1851
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	3 cut(s)	30, 187, 1462
Bsp19I	CCATGG	2 cut(s)	664, 1010
BspACI	CCGC	6 cut(s)	283, 318, 574, 576, 839, 1242
BspANI	GGCC	6 cut(s)	293, 642, 663, 731, 1007, 1576
BspCNI	CTCAG	2 cut(s)	109, 899
BspFNI	CGCG	1 cut(s)	576
BspHI	TCATGA	2 cut(s)	190, 1725
BspMAI	CTGCAG	1 cut(s)	1384
BspMI	ACCTGC	2 cut(s)	1142, 1802
BspT107I	GGYRCC	2 cut(s)	210, 754
BspTNI	GGTCTC	1 cut(s)	1486
BsrDI	GCAATG	2 cut(s)	292, 780
BsrFI	RCCGGY	1 cut(s)	734
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	7 cut(s)	108, 214, 301, 496, 751, 1700, 1893
BssAI	RCCGGY	1 cut(s)	734
BssECI	CCNNGG	6 cut(s)	574, 664, 1010, 1475, 1843, 1844
BssMI	GATC	3 cut(s)	30, 187, 1462
BssNI	GRCGYC	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	664, 1010
Bst2UI	CCWGG	2 cut(s)	1521, 1845
Bst4CI	ACNGT	5 cut(s)	583, 1024, 1134, 1453, 1910
BstACI	GRCGYC	1 cut(s)	606
BstAPI	GCANNNNNTGC	2 cut(s)	761, 920
BstAUI	TGTACA	1 cut(s)	777
BstBAI	YACGTR	1 cut(s)	1351
BstC8I	GCNNGC	6 cut(s)	131, 661, 1033, 1324, 1470, 1902
BstDEI	CTNAG	3 cut(s)	117, 886, 1655
BstDSI	CCRYGG	3 cut(s)	574, 664, 1010
BstEII	GGTNACC	1 cut(s)	1698
BstF5I	GGATG	5 cut(s)	367, 508, 862, 1560, 1777
BstFNI	CGCG	1 cut(s)	576
BstKTI	GATC	3 cut(s)	33, 190, 1465
BstMAI	GTCTC	3 cut(s)	113, 1486, 1916
BstMBI	GATC	3 cut(s)	30, 187, 1462
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 259, 761, 770, 920, 929, 1808
BstNI	CCWGG	2 cut(s)	1521, 1845
BstNSI	RCATGY	3 cut(s)	61, 133, 1370
BstPI	GGTNACC	1 cut(s)	1698
BstSCI	CCNGG	3 cut(s)	1519, 1549, 1843
BstSFI	CTRYAG	3 cut(s)	633, 1380, 1425
BstSLI	GKGCMC	1 cut(s)	1159
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	6 cut(s)	317, 408, 811, 1555, 1693, 1799
BstXI	CCANNNNNNTGG	2 cut(s)	552, 1768
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	6 cut(s)	293, 642, 663, 731, 1007, 1576
BtgI	CCRYGG	3 cut(s)	574, 664, 1010
BtgZI	GCGATG	1 cut(s)	1200
BtsCI	GGATG	5 cut(s)	367, 508, 862, 1560, 1777
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	3 cut(s)	294, 834, 1449
BveI	ACCTGC	2 cut(s)	1142, 1802
Cac8I	GCNNGC	6 cut(s)	131, 661, 1033, 1324, 1470, 1902
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	2 cut(s)	190, 1725
Cfr10I	RCCGGY	1 cut(s)	734
Cfr13I	GGNCC	7 cut(s)	641, 977, 1006, 1194, 1502, 1547, 1758
Cfr42I	CCGCGG	1 cut(s)	577
CseI	GACGC	2 cut(s)	614, 1352
Csp6I	GTAC	5 cut(s)	101, 211, 533, 778, 1632
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviQI	GTAC	5 cut(s)	101, 211, 533, 778, 1632
DdeI	CTNAG	3 cut(s)	117, 886, 1655
DpnI	GATC	3 cut(s)	32, 189, 1464
DpnII	GATC	3 cut(s)	30, 187, 1462
DriI	GACNNNNNGTC	1 cut(s)	1096
EaeI	YGGCCR	2 cut(s)	291, 729
Eam1105I	GACNNNNNGTC	1 cut(s)	1096
EciI	GGCGGA	1 cut(s)	1257
Ecl136II	GAGCTC	1 cut(s)	1683
Eco130I	CCWWGG	2 cut(s)	664, 1010
Eco24I	GRGCYC	2 cut(s)	1685, 1851
Eco31I	GGTCTC	1 cut(s)	1486
Eco47I	GGWCC	5 cut(s)	977, 1194, 1502, 1547, 1758
Eco53kI	GAGCTC	1 cut(s)	1683
Eco57I	CTGAAG	2 cut(s)	735, 1758
Eco72I	CACGTG	1 cut(s)	1351
Eco91I	GGTNACC	1 cut(s)	1698
EcoICRI	GAGCTC	1 cut(s)	1683
EcoO109I	RGGNCCY	4 cut(s)	641, 977, 1006, 1194
EcoO65I	GGTNACC	1 cut(s)	1698
EcoRII	CCWGG	2 cut(s)	1519, 1843
EcoT14I	CCWWGG	2 cut(s)	664, 1010
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	1685, 1851
ErhI	CCWWGG	2 cut(s)	664, 1010
FaqI	GGGAC	5 cut(s)	450, 592, 990, 1180, 1533
FauI	CCCGC	1 cut(s)	569
FbaI	TGATCA	2 cut(s)	187, 1462
Fnu4HI	GCNGC	6 cut(s)	306, 422, 825, 1569, 1707, 1788
FokI	GGATG	5 cut(s)	354, 495, 869, 1547, 1784
FriOI	GRGCYC	2 cut(s)	1685, 1851
Fsp4HI	GCNGC	6 cut(s)	306, 422, 825, 1569, 1707, 1788
FspBI	CTAG	6 cut(s)	51, 74, 113, 821, 1235, 1565
GluI	GCNGC	6 cut(s)	306, 422, 825, 1569, 1707, 1788
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	2 cut(s)	528, 711
HaeIII	GGCC	6 cut(s)	293, 642, 663, 731, 1007, 1576
HapII	CCGG	3 cut(s)	735, 1551, 1629
HgaI	GACGC	2 cut(s)	614, 1352
Hin1I	GRCGYC	1 cut(s)	606
HincII	GTYRAC	2 cut(s)	1309, 1822
HindII	GTYRAC	2 cut(s)	1309, 1822
HindIII	AAGCTT	2 cut(s)	596, 1067
HinfI	GANTC	7 cut(s)	379, 809, 1015, 1097, 1169, 1300, 1601
HpaI	GTTAAC	1 cut(s)	1822
HpaII	CCGG	3 cut(s)	735, 1551, 1629
HphI	GGTGA	5 cut(s)	473, 1399, 1472, 1643, 1692
Hpy166II	GTNNAC	6 cut(s)	1157, 1309, 1588, 1744, 1761, 1822
Hpy188I	TCNGA	5 cut(s)	187, 793, 814, 939, 1476
Hpy188III	TCNNGA	5 cut(s)	191, 371, 1497, 1678, 1726
Hpy8I	GTNNAC	6 cut(s)	1157, 1309, 1588, 1744, 1761, 1822
Hpy99I	CGWCG	2 cut(s)	89, 608
HpyAV	CCTTC	6 cut(s)	458, 521, 522, 934, 1205, 1836
HpyCH4III	ACNGT	5 cut(s)	583, 1024, 1134, 1453, 1910
HpyCH4IV	ACGT	1 cut(s)	1350
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 259, 761, 770, 920, 929, 1808
HpyF3I	CTNAG	3 cut(s)	117, 886, 1655
HpySE526I	ACGT	1 cut(s)	1350
Hsp92I	GRCGYC	1 cut(s)	606
KflI	GGGWCCC	1 cut(s)	1194
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	2 cut(s)	187, 1462
KspAI	GTTAAC	1 cut(s)	1822
KspI	CCGCGG	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	30, 187, 1462
LmnI	GCTCC	5 cut(s)	929, 1028, 1477, 1667, 1889
Lsp1109I	GCAGC	6 cut(s)	317, 408, 811, 1555, 1693, 1799
LweI	GCATC	4 cut(s)	15, 646, 1401, 1569
MaeI	CTAG	6 cut(s)	51, 74, 113, 821, 1235, 1565
MaeII	ACGT	1 cut(s)	1350
MaeIII	GTNAC	4 cut(s)	69, 1134, 1373, 1698
MalI	GATC	3 cut(s)	32, 189, 1464
MboI	GATC	3 cut(s)	30, 187, 1462
MboII	GAAGA	4 cut(s)	206, 344, 355, 1263
MfeI	CAATTG	3 cut(s)	234, 386, 648
MhlI	GDGCHC	3 cut(s)	1159, 1685, 1851
MlsI	TGGCCA	2 cut(s)	293, 731
MluCI	AATT	9 cut(s)	234, 386, 454, 648, 909, 933, 945, 1245, 1254
MluNI	TGGCCA	2 cut(s)	293, 731
MlyI	GAGTC	2 cut(s)	803, 1106
MmeI	TCCRAC	1 cut(s)	1006
Mox20I	TGGCCA	2 cut(s)	293, 731
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	1168
MscI	TGGCCA	2 cut(s)	293, 731
MseI	TTAA	4 cut(s)	1200, 1617, 1713, 1821
MslI	CAYNNNNRTG	3 cut(s)	1164, 1656, 1766
Msp20I	TGGCCA	2 cut(s)	293, 731
MspA1I	CMGCKG	4 cut(s)	576, 689, 957, 1706
MspI	CCGG	3 cut(s)	735, 1551, 1629
MspR9I	CCNGG	3 cut(s)	1521, 1551, 1845
MunI	CAATTG	3 cut(s)	234, 386, 648
MvaI	CCWGG	2 cut(s)	1521, 1845
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	7 cut(s)	54, 259, 761, 770, 920, 929, 1808
NciI	CCSGG	1 cut(s)	1551
NcoI	CCATGG	2 cut(s)	664, 1010
NdeII	GATC	3 cut(s)	30, 187, 1462
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	2 cut(s)	69, 1698
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	3 cut(s)	61, 133, 1370
OliI	CACNNNNGTG	1 cut(s)	1656
PaeI	GCATGC	1 cut(s)	133
PagI	TCATGA	2 cut(s)	190, 1725
PaqCI	CACCTGC	1 cut(s)	1142
PasI	CCCWGGG	1 cut(s)	1844
PciI	ACATGT	1 cut(s)	1366
PdmI	GAANNNNTTC	1 cut(s)	1168
PfeI	GAWTC	5 cut(s)	379, 1015, 1169, 1300, 1601
PkrI	GCNGC	6 cut(s)	307, 423, 826, 1570, 1708, 1789
PleI	GAGTC	2 cut(s)	803, 1105
PmaCI	CACGTG	1 cut(s)	1351
PmlI	CACGTG	1 cut(s)	1351
PpsI	GAGTC	2 cut(s)	803, 1105
Ppu21I	YACGTR	1 cut(s)	1351
PpuMI	RGGWCCY	2 cut(s)	977, 1194
PscI	ACATGT	1 cut(s)	1366
Psp124BI	GAGCTC	1 cut(s)	1685
Psp5II	RGGWCCY	2 cut(s)	977, 1194
Psp6I	CCWGG	2 cut(s)	1519, 1843
PspCI	CACGTG	1 cut(s)	1351
PspEI	GGTNACC	1 cut(s)	1698
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	1519, 1843
PspPI	GGNCC	7 cut(s)	641, 977, 1006, 1194, 1502, 1547, 1758
PspPPI	RGGWCCY	2 cut(s)	977, 1194
PstI	CTGCAG	1 cut(s)	1384
PstNI	CAGNNNCTG	1 cut(s)	746
PvuII	CAGCTG	3 cut(s)	689, 957, 1706
RsaI	GTAC	5 cut(s)	102, 212, 534, 779, 1633
RsaNI	GTAC	5 cut(s)	101, 211, 533, 778, 1632
RseI	CAYNNNNRTG	3 cut(s)	1164, 1656, 1766
SacI	GAGCTC	1 cut(s)	1685
SacII	CCGCGG	1 cut(s)	577
SaqAI	TTAA	4 cut(s)	1200, 1617, 1713, 1821
SatI	GCNGC	6 cut(s)	306, 422, 825, 1569, 1707, 1788
Sau3AI	GATC	3 cut(s)	30, 187, 1462
Sau96I	GGNCC	7 cut(s)	641, 977, 1006, 1194, 1502, 1547, 1758
ScaI	AGTACT	1 cut(s)	102
SchI	GAGTC	2 cut(s)	803, 1106
ScrFI	CCNGG	3 cut(s)	1521, 1551, 1845
SduI	GDGCHC	3 cut(s)	1159, 1685, 1851
SfaNI	GCATC	4 cut(s)	15, 646, 1401, 1569
SfcI	CTRYAG	3 cut(s)	633, 1380, 1425
Sfr303I	CCGCGG	1 cut(s)	577
SgrBI	CCGCGG	1 cut(s)	577
SinI	GGWCC	5 cut(s)	977, 1194, 1502, 1547, 1758
SmiMI	CAYNNNNRTG	3 cut(s)	1164, 1656, 1766
SmlI	CTYRAG	1 cut(s)	1676
SmoI	CTYRAG	1 cut(s)	1676
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	9 cut(s)	234, 386, 454, 648, 909, 933, 945, 1245, 1254
SsiI	CCGC	6 cut(s)	283, 318, 574, 576, 839, 1242
SspMI	CTAG	6 cut(s)	51, 74, 113, 821, 1235, 1565
SstI	GAGCTC	1 cut(s)	1685
StyD4I	CCNGG	3 cut(s)	1519, 1549, 1843
StyI	CCWWGG	2 cut(s)	664, 1010
TaaI	ACNGT	5 cut(s)	583, 1024, 1134, 1453, 1910
TaiI	ACGT	1 cut(s)	1353
TaqI	TCGA	3 cut(s)	87, 603, 1496
TasI	AATT	9 cut(s)	234, 386, 454, 648, 909, 933, 945, 1245, 1254
TatI	WGTACW	2 cut(s)	100, 777
TfiI	GAWTC	5 cut(s)	379, 1015, 1169, 1300, 1601
Tru1I	TTAA	4 cut(s)	1200, 1617, 1713, 1821
Tru9I	TTAA	4 cut(s)	1200, 1617, 1713, 1821
TscAI	CASTG	3 cut(s)	301, 841, 1456
TseFI	GTSAC	2 cut(s)	69, 1698
TseI	GCWGC	6 cut(s)	305, 421, 824, 1568, 1706, 1787
Tsp45I	GTSAC	2 cut(s)	69, 1698
TspDTI	ATGAA	7 cut(s)	207, 272, 504, 540, 1161, 1482, 1788
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	3 cut(s)	301, 841, 1456
VneI	GTGCAC	1 cut(s)	1155
VpaK11BI	GGWCC	5 cut(s)	977, 1194, 1502, 1547, 1758
XapI	RAATTY	1 cut(s)	945
XceI	RCATGY	3 cut(s)	61, 133, 1370
XmnI	GAANNNNTTC	1 cut(s)	1168
XspI	CTAG	6 cut(s)	51, 74, 113, 821, 1235, 1565
ZrmI	AGTACT	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.