Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

53195311 .. 53205813

Gene Structure 10503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG347600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3768 bp

ATGGCCGTCTCCTTCCCGAGGCTCCGTGTTGTACACACCGAAACGACAAAAAAACTAACAGCAGCGGCTTTTAGAATGGGCATGATAGATAGTGGAAGTATGGAGCAGTCGCACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCGGCCGATAAGAAGAAGCCCCAAAAAGATTCGAAGAAGCAAAACCCCAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGGCTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTCGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCCATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCATCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAATATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGATTCAGAAGATGATGACGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATAGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCAGTTTCAACTAAAGCCAGTGAAGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACAAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCGAAGGCTGCTAAAAGAAATCAAGACACAGAGGCAACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTCGAAGATTTAGAAACGGGTGAGAGGCATGATGGATATCATACAAATGAGACGAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGACGGAATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGAAACAAGTGATGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGTGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGAAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACATCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATATTCCTTGTGAGATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGAGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACGCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1255

Amino Acids

144.06

Weight (kDa)

8.64

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	266 - 339	3.2e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	804 - 1088	7.8e-84	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3038
AarI	CACCTGC	2 cut(s)	959, 3109
Acc36I	ACCTGC	2 cut(s)	959, 3109
AccBSI	CCGCTC	1 cut(s)	2266
AccI	GTMKAC	1 cut(s)	2822
AccII	CGCG	4 cut(s)	2073, 2974, 3246, 3758
AccIII	TCCGGA	1 cut(s)	2550
AciI	CCGC	9 cut(s)	65, 149, 448, 498, 928, 2266, 2692, 2937, 3758
AclWI	GGATC	5 cut(s)	1007, 1107, 1528, 2609, 2939
AcoI	YGGCCR	2 cut(s)	3, 150
AcsI	RAATTY	5 cut(s)	503, 2015, 2334, 2902, 3558
AcuI	CTGAAG	2 cut(s)	1725, 2483
AfaI	GTAC	2 cut(s)	33, 3453
AflII	CTTAAG	1 cut(s)	2816
AflIII	ACRYGT	2 cut(s)	1585, 2407
AhlI	ACTAGT	1 cut(s)	2995
AjnI	CCWGG	3 cut(s)	1164, 2681, 3317
AjuI	GAANNNNNNNTTGG	6 cut(s)	1292, 1324, 1374, 1406, 1793, 1825
AloI	GAACNNNNNNTCC	2 cut(s)	811, 843
Alw21I	GWGCWC	2 cut(s)	3203, 3313
Alw26I	GTCTC	8 cut(s)	13, 239, 246, 1760, 1825, 1950, 2210, 3745
Alw44I	GTGCAC	1 cut(s)	3199
AlwI	GGATC	5 cut(s)	1007, 1107, 1528, 2609, 2939
Ama87I	CYCGRG	2 cut(s)	16, 3306
Aor13HI	TCCGGA	1 cut(s)	2550
AoxI	GGCC	5 cut(s)	3, 150, 415, 2679, 2860
ApaI	GGGCCC	1 cut(s)	2864
ApaLI	GTGCAC	1 cut(s)	3199
ApeKI	GCWGC	8 cut(s)	62, 262, 667, 1034, 1051, 1481, 2105, 3131
ApoI	RAATTY	5 cut(s)	503, 2015, 2334, 2902, 3558
ArsI	GACNNNNNNTTYG	2 cut(s)	1107, 1139
AsiSI	GCGATCGC	1 cut(s)	2077
AspLEI	GCGC	6 cut(s)	882, 2073, 3246, 3248, 3615, 3690
AspS9I	GGNCC	5 cut(s)	126, 335, 416, 2860, 2861
AsuC2I	CCSGG	3 cut(s)	130, 3113, 3719
AsuII	TTCGAA	3 cut(s)	179, 2169, 3094
AvaI	CYCGRG	2 cut(s)	16, 3306
AvaII	GGWCC	2 cut(s)	126, 335
AxyI	CCTNAGG	1 cut(s)	3483
BaeGI	GKGCMC	3 cut(s)	470, 2864, 3203
BaeI	ACNNNNGTAYC	4 cut(s)	414, 447, 2394, 2427
BanII	GRGCYC	2 cut(s)	2864, 3313
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	3 cut(s)	1226, 1731, 3455
Bbv12I	GWGCWC	2 cut(s)	3203, 3313
BbvI	GCAGC	8 cut(s)	74, 274, 679, 1021, 1038, 1468, 2092, 3118
BceAI	ACGGC	4 cut(s)	233, 284, 316, 2958
BcgI	CGANNNNNNTGC	2 cut(s)	1688, 1722
BciT130I	CCWGG	3 cut(s)	1166, 2683, 3319
BciVI	GTATCC	2 cut(s)	2663, 3481
BclI	TGATCA	2 cut(s)	363, 1141
BcnI	CCSGG	3 cut(s)	130, 3113, 3719
BcoDI	GTCTC	8 cut(s)	13, 239, 246, 1760, 1825, 1950, 2210, 3745
BcuI	ACTAGT	1 cut(s)	2995
BfaI	CTAG	3 cut(s)	839, 1515, 2996
BfmI	CTRYAG	1 cut(s)	3336
BfoI	RGCGCY	1 cut(s)	3691
BfrI	CTTAAG	1 cut(s)	2816
BfuAI	ACCTGC	2 cut(s)	959, 3109
BfuI	GTATCC	2 cut(s)	2663, 3481
BglII	AGATCT	2 cut(s)	1333, 3058
BlpI	GCTNAGC	1 cut(s)	1006
Bme1390I	CCNGG	6 cut(s)	130, 1166, 2683, 3113, 3319, 3719
Bme18I	GGWCC	2 cut(s)	126, 335
BmeT110I	CYCGRG	2 cut(s)	16, 3306
BmgT120I	GGNCC	5 cut(s)	126, 335, 416, 2860, 2861
BmiI	GGNNCC	8 cut(s)	23, 128, 142, 418, 2394, 2861, 2862, 3543
BmrFI	CCNGG	6 cut(s)	130, 1166, 2683, 3113, 3319, 3719
BpiI	GAAGAC	3 cut(s)	1226, 1731, 3455
BplI	GAGNNNNNCTC	4 cut(s)	808, 840, 3529, 3561
BpmI	CTGGAG	2 cut(s)	221, 2811
Bpu1102I	GCTNAGC	1 cut(s)	1006
Bpu14I	TTCGAA	3 cut(s)	179, 2169, 3094
BpuEI	CTTGAG	4 cut(s)	1223, 2975, 3240, 3536
BpuMI	CCSGG	3 cut(s)	130, 3113, 3719
BsaBI	GATNNNNATC	1 cut(s)	2202
BsaJI	CCNNGG	9 cut(s)	17, 144, 195, 331, 342, 589, 1221, 2940, 3112
BsaWI	WCCGGW	1 cut(s)	2550
Bse1I	ACTGG	9 cut(s)	238, 1893, 2045, 2092, 2416, 2671, 2724, 2887, 3438
Bse21I	CCTNAGG	1 cut(s)	3483
Bse3DI	GCAATG	4 cut(s)	518, 2803, 2839, 2856
Bse8I	GATNNNNATC	1 cut(s)	2202
BseAI	TCCGGA	1 cut(s)	2550
BseBI	CCWGG	3 cut(s)	1166, 2683, 3319
BseDI	CCNNGG	9 cut(s)	17, 144, 195, 331, 342, 589, 1221, 2940, 3112
BseGI	GGATG	8 cut(s)	802, 826, 1174, 1213, 2526, 3108, 3333, 3631
BseJI	GATNNNNATC	1 cut(s)	2202
BseMI	GCAATG	4 cut(s)	518, 2803, 2839, 2856
BseMII	CTCAG	6 cut(s)	644, 1467, 3069, 3333, 3588, 3749
BseNI	ACTGG	9 cut(s)	238, 1893, 2045, 2092, 2416, 2671, 2724, 2887, 3438
BsePI	GCGCGC	1 cut(s)	3244
BseRI	GAGGAG	5 cut(s)	1931, 2276, 2483, 3364, 3763
BseSI	GKGCMC	3 cut(s)	470, 2864, 3203
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	8 cut(s)	74, 274, 679, 1021, 1038, 1468, 2092, 3118
BseYI	CCCAGC	1 cut(s)	1409
Bsh1236I	CGCG	4 cut(s)	2073, 2974, 3246, 3758
Bsh1285I	CGRYCG	2 cut(s)	153, 2077
BshFI	GGCC	5 cut(s)	5, 152, 417, 2681, 2862
BsiEI	CGRYCG	2 cut(s)	153, 2077
BsiHKAI	GWGCWC	2 cut(s)	3203, 3313
BsiHKCI	CYCGRG	2 cut(s)	16, 3306
BsiSI	CCGG	4 cut(s)	130, 2551, 3112, 3718
BslFI	GGGAC	3 cut(s)	112, 355, 2572
BsmAI	GTCTC	8 cut(s)	13, 239, 246, 1760, 1825, 1950, 2210, 3745
BsmBI	CGTCTC	4 cut(s)	13, 239, 1950, 2210
BsmFI	GGGAC	3 cut(s)	112, 355, 2572
BsmI	GAATGC	2 cut(s)	200, 1356
BsnI	GGCC	5 cut(s)	5, 152, 417, 2681, 2862
BsoBI	CYCGRG	2 cut(s)	16, 3306
Bsp119I	TTCGAA	3 cut(s)	179, 2169, 3094
Bsp120I	GGGCCC	1 cut(s)	2860
Bsp1286I	GDGCHC	4 cut(s)	470, 2864, 3203, 3313
Bsp13I	TCCGGA	1 cut(s)	2550
Bsp1407I	TGTACA	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	1006
Bsp19I	CCATGG	3 cut(s)	331, 589, 1221
Bsp68I	TCGCGA	1 cut(s)	2974
BspACI	CCGC	9 cut(s)	65, 149, 448, 498, 928, 2266, 2692, 2937, 3758
BspANI	GGCC	5 cut(s)	5, 152, 417, 2681, 2862
BspCNI	CTCAG	6 cut(s)	645, 1466, 3068, 3334, 3589, 3748
BspEI	TCCGGA	1 cut(s)	2550
BspFNI	CGCG	4 cut(s)	2073, 2974, 3246, 3758
BspHI	TCATGA	4 cut(s)	739, 1597, 2581, 3547
BspLI	GGNNCC	8 cut(s)	23, 128, 142, 418, 2394, 2861, 2862, 3543
BspMI	ACCTGC	2 cut(s)	959, 3109
BspPI	GGATC	5 cut(s)	1007, 1107, 1528, 2609, 2939
BspQI	GCTCTTC	2 cut(s)	2292, 3520
BspT104I	TTCGAA	3 cut(s)	179, 2169, 3094
BspTI	CTTAAG	1 cut(s)	2816
BsrBI	CCGCTC	1 cut(s)	2266
BsrDI	GCAATG	4 cut(s)	518, 2803, 2839, 2856
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	9 cut(s)	238, 1893, 2045, 2092, 2416, 2671, 2724, 2887, 3438
BssECI	CCNNGG	9 cut(s)	17, 144, 195, 331, 342, 589, 1221, 2940, 3112
BssHII	GCGCGC	1 cut(s)	3244
BssNAI	GTATAC	1 cut(s)	2823
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	6 cut(s)	144, 195, 331, 342, 589, 1221
Bst1107I	GTATAC	1 cut(s)	2823
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	1166, 2683, 3319
Bst4CI	ACNGT	6 cut(s)	220, 986, 1694, 1910, 3100, 3337
Bst6I	CTCTTC	5 cut(s)	1662, 1729, 2253, 2292, 3520
BstAFI	CTTAAG	1 cut(s)	2816
BstAPI	GCANNNNNTGC	2 cut(s)	506, 2812
BstAUI	TGTACA	1 cut(s)	31
BstBI	TTCGAA	3 cut(s)	179, 2169, 3094
BstC8I	GCNNGC	6 cut(s)	2248, 2283, 2624, 2679, 2813, 3246
BstDEI	CTNAG	9 cut(s)	653, 1006, 1453, 2251, 3055, 3342, 3483, 3597, 3735
BstDSI	CCRYGG	4 cut(s)	331, 589, 1221, 2940
BstEII	GGTNACC	2 cut(s)	3002, 3149
BstENI	CCTNNNNNAGG	2 cut(s)	16, 2519
BstF5I	GGATG	8 cut(s)	802, 826, 1174, 1213, 2526, 3108, 3333, 3631
BstFNI	CGCG	4 cut(s)	2073, 2974, 3246, 3758
BstH2I	RGCGCY	1 cut(s)	3691
BstHHI	GCGC	6 cut(s)	882, 2073, 3246, 3248, 3615, 3690
BstMAI	GTCTC	8 cut(s)	13, 239, 246, 1760, 1825, 1950, 2210, 3745
BstMCI	CGRYCG	2 cut(s)	153, 2077
BstNI	CCWGG	3 cut(s)	1166, 2683, 3319
BstNSI	RCATGY	5 cut(s)	1589, 2411, 2677, 2815, 2839
BstPI	GGTNACC	2 cut(s)	3002, 3149
BstSCI	CCNGG	6 cut(s)	128, 1164, 2681, 3111, 3317, 3717
BstSFI	CTRYAG	1 cut(s)	3336
BstSLI	GKGCMC	3 cut(s)	470, 2864, 3203
BstUI	CGCG	4 cut(s)	2073, 2974, 3246, 3758
BstV1I	GCAGC	8 cut(s)	74, 274, 679, 1021, 1038, 1468, 2092, 3118
BstV2I	GAAGAC	3 cut(s)	1226, 1731, 3455
BstX2I	RGATCY	4 cut(s)	1099, 1333, 1520, 3058
BstYI	RGATCY	4 cut(s)	1099, 1333, 1520, 3058
BstZ17I	GTATAC	1 cut(s)	2823
BstZI	CGGCCG	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	3483
BsuI	GTATCC	2 cut(s)	2663, 3481
BsuRI	GGCC	5 cut(s)	5, 152, 417, 2681, 2862
BtgI	CCRYGG	4 cut(s)	331, 589, 1221, 2940
BtgZI	GCGATG	2 cut(s)	2792, 2955
BtsCI	GGATG	8 cut(s)	802, 826, 1174, 1213, 2526, 3108, 3333, 3631
BtsIMutI	CAGTG	7 cut(s)	991, 1900, 2085, 2664, 2731, 3109, 3431
BtuMI	TCGCGA	1 cut(s)	2974
BveI	ACCTGC	2 cut(s)	959, 3109
Cac8I	GCNNGC	6 cut(s)	2248, 2283, 2624, 2679, 2813, 3246
CciI	TCATGA	4 cut(s)	739, 1597, 2581, 3547
CfoI	GCGC	6 cut(s)	882, 2073, 3246, 3248, 3615, 3690
Cfr13I	GGNCC	5 cut(s)	126, 335, 416, 2860, 2861
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	32, 3452
CspCI	CAANNNNNGTGG	2 cut(s)	2929, 2964
CviQI	GTAC	2 cut(s)	32, 3452
DdeI	CTNAG	9 cut(s)	653, 1006, 1453, 2251, 3055, 3342, 3483, 3597, 3735
DraI	TTTAAA	2 cut(s)	675, 3472
EaeI	YGGCCR	2 cut(s)	3, 150
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	5 cut(s)	1662, 1729, 2253, 2292, 3520
EarI	CTCTTC	5 cut(s)	1662, 1729, 2253, 2292, 3520
Ecl136II	GAGCTC	1 cut(s)	3311
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	6 cut(s)	144, 195, 331, 342, 589, 1221
Eco24I	GRGCYC	2 cut(s)	2864, 3313
Eco32I	GATATC	2 cut(s)	478, 2204
Eco47I	GGWCC	2 cut(s)	126, 335
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	3311
Eco57I	CTGAAG	2 cut(s)	1725, 2483
Eco81I	CCTNAGG	1 cut(s)	3483
Eco88I	CYCGRG	2 cut(s)	16, 3306
Eco91I	GGTNACC	2 cut(s)	3002, 3149
EcoICRI	GAGCTC	1 cut(s)	3311
EcoNI	CCTNNNNNAGG	2 cut(s)	16, 2519
EcoO109I	RGGNCCY	4 cut(s)	126, 416, 2860, 2861
EcoO65I	GGTNACC	2 cut(s)	3002, 3149
EcoRII	CCWGG	3 cut(s)	1164, 2681, 3317
EcoRV	GATATC	2 cut(s)	478, 2204
EcoT14I	CCWWGG	6 cut(s)	144, 195, 331, 342, 589, 1221
EcoT22I	ATGCAT	2 cut(s)	2841, 2971
EcoT38I	GRGCYC	2 cut(s)	2864, 3313
ErhI	CCWWGG	6 cut(s)	144, 195, 331, 342, 589, 1221
Esp3I	CGTCTC	4 cut(s)	13, 239, 1950, 2210
FalI	AAGNNNNNCTT	4 cut(s)	1185, 1217, 3447, 3479
FaqI	GGGAC	3 cut(s)	112, 355, 2572
FauI	CCCGC	2 cut(s)	441, 921
FauNDI	CATATG	1 cut(s)	2365
FbaI	TGATCA	2 cut(s)	363, 1141
FblI	GTMKAC	1 cut(s)	2822
FokI	GGATG	8 cut(s)	789, 813, 1181, 1220, 2513, 3095, 3340, 3638
FriOI	GRGCYC	2 cut(s)	2864, 3313
FspBI	CTAG	3 cut(s)	839, 1515, 2996
GlaI	GCGC	6 cut(s)	881, 2072, 3245, 3247, 3614, 3689
GsaI	CCCAGC	1 cut(s)	1413
GsuI	CTGGAG	2 cut(s)	221, 2811
HaeII	RGCGCY	1 cut(s)	3691
HaeIII	GGCC	5 cut(s)	5, 152, 417, 2681, 2862
HapII	CCGG	4 cut(s)	130, 2551, 3112, 3718
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	6 cut(s)	882, 2073, 3246, 3248, 3615, 3690
Hin6I	GCGC	6 cut(s)	880, 2071, 3244, 3246, 3613, 3688
HinP1I	GCGC	6 cut(s)	880, 2071, 3244, 3246, 3613, 3688
HincII	GTYRAC	4 cut(s)	1561, 2455, 3379, 3678
HindII	GTYRAC	4 cut(s)	1561, 2455, 3379, 3678
HindIII	AAGCTT	2 cut(s)	2054, 2279
HpaI	GTTAAC	2 cut(s)	1561, 3379
HpaII	CCGG	4 cut(s)	130, 2551, 3112, 3718
Hpy166II	GTNNAC	9 cut(s)	34, 1561, 2455, 2823, 3051, 3173, 3201, 3379, 3678
Hpy8I	GTNNAC	9 cut(s)	34, 1561, 2455, 2823, 3051, 3173, 3201, 3379, 3678
Hpy99I	CGWCG	4 cut(s)	254, 270, 1694, 3708
HpyCH4III	ACNGT	6 cut(s)	220, 986, 1694, 1910, 3100, 3337
HpyCH4IV	ACGT	1 cut(s)	757
HpyF3I	CTNAG	9 cut(s)	653, 1006, 1453, 2251, 3055, 3342, 3483, 3597, 3735
HpySE526I	ACGT	1 cut(s)	757
HspAI	GCGC	6 cut(s)	880, 2071, 3244, 3246, 3613, 3688
Kpn2I	TCCGGA	1 cut(s)	2550
Ksp22I	TGATCA	2 cut(s)	363, 1141
KspAI	GTTAAC	2 cut(s)	1561, 3379
LguI	GCTCTTC	2 cut(s)	2292, 3520
LmnI	GCTCC	7 cut(s)	27, 103, 299, 707, 1270, 2263, 3541
Lsp1109I	GCAGC	8 cut(s)	74, 274, 679, 1021, 1038, 1468, 2092, 3118
MaeI	CTAG	3 cut(s)	839, 1515, 2996
MaeII	ACGT	1 cut(s)	757
MbiI	CCGCTC	1 cut(s)	2266
MfeI	CAATTG	1 cut(s)	3402
MflI	RGATCY	4 cut(s)	1099, 1333, 1520, 3058
MhlI	GDGCHC	4 cut(s)	470, 2864, 3203, 3313
MlyI	GAGTC	3 cut(s)	1745, 1814, 3247
MmeI	TCCRAC	4 cut(s)	305, 1248, 2553, 2617
Mph1103I	ATGCAT	2 cut(s)	2841, 2971
MroI	TCCGGA	1 cut(s)	2550
MslI	CAYNNNNRTG	3 cut(s)	831, 1361, 2211
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	2816
MspI	CCGG	4 cut(s)	130, 2551, 3112, 3718
MspR9I	CCNGG	6 cut(s)	130, 1166, 2683, 3113, 3319, 3719
MunI	CAATTG	1 cut(s)	3402
Mva1269I	GAATGC	2 cut(s)	200, 1356
MvaI	CCWGG	3 cut(s)	1166, 2683, 3319
MvnI	CGCG	4 cut(s)	2073, 2974, 3246, 3758
NciI	CCSGG	3 cut(s)	130, 3113, 3719
NcoI	CCATGG	3 cut(s)	331, 589, 1221
NdeI	CATATG	1 cut(s)	2365
NlaIV	GGNNCC	8 cut(s)	23, 128, 142, 418, 2394, 2861, 2862, 3543
NmuCI	GTSAC	8 cut(s)	859, 907, 1216, 2083, 2162, 2344, 2726, 3227
NruI	TCGCGA	1 cut(s)	2974
NsiI	ATGCAT	2 cut(s)	2841, 2971
NspI	RCATGY	5 cut(s)	1589, 2411, 2677, 2815, 2839
NspV	TTCGAA	3 cut(s)	179, 2169, 3094
PaeI	GCATGC	1 cut(s)	2815
PagI	TCATGA	4 cut(s)	739, 1597, 2581, 3547
PaqCI	CACCTGC	2 cut(s)	959, 3109
PauI	GCGCGC	1 cut(s)	3244
PciI	ACATGT	2 cut(s)	1585, 2407
PciSI	GCTCTTC	2 cut(s)	2292, 3520
PcsI	WCGNNNNNNNCGW	1 cut(s)	1695
PctI	GAATGC	2 cut(s)	200, 1356
Ple19I	CGATCG	1 cut(s)	2077
PleI	GAGTC	3 cut(s)	1744, 1813, 3247
PpsI	GAGTC	3 cut(s)	1744, 1813, 3247
PpuMI	RGGWCCY	1 cut(s)	126
PscI	ACATGT	2 cut(s)	1585, 2407
PsiI	TTATAA	1 cut(s)	3038
Psp124BI	GAGCTC	1 cut(s)	3313
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	3 cut(s)	1164, 2681, 3317
PspEI	GGTNACC	2 cut(s)	3002, 3149
PspFI	CCCAGC	1 cut(s)	1409
PspGI	CCWGG	3 cut(s)	1164, 2681, 3317
PspN4I	GGNNCC	8 cut(s)	23, 128, 142, 418, 2394, 2861, 2862, 3543
PspOMI	GGGCCC	1 cut(s)	2860
PspPI	GGNCC	5 cut(s)	126, 335, 416, 2860, 2861
PspPPI	RGGWCCY	1 cut(s)	126
PsuI	RGATCY	4 cut(s)	1099, 1333, 1520, 3058
PteI	GCGCGC	1 cut(s)	3244
PvuI	CGATCG	1 cut(s)	2077
RgaI	GCGATCGC	1 cut(s)	2077
RruI	TCGCGA	1 cut(s)	2974
RsaI	GTAC	2 cut(s)	33, 3453
RsaNI	GTAC	2 cut(s)	32, 3452
RseI	CAYNNNNRTG	3 cut(s)	831, 1361, 2211
SacI	GAGCTC	1 cut(s)	3313
SapI	GCTCTTC	2 cut(s)	2292, 3520
Sau96I	GGNCC	5 cut(s)	126, 335, 416, 2860, 2861
SchI	GAGTC	3 cut(s)	1745, 1814, 3247
ScrFI	CCNGG	6 cut(s)	130, 1166, 2683, 3113, 3319, 3719
SduI	GDGCHC	4 cut(s)	470, 2864, 3203, 3313
SfaAI	GCGATCGC	1 cut(s)	2077
SfcI	CTRYAG	1 cut(s)	3336
SfuI	TTCGAA	3 cut(s)	179, 2169, 3094
SgfI	GCGATCGC	1 cut(s)	2077
SinI	GGWCC	2 cut(s)	126, 335
SmiI	ATTTAAAT	1 cut(s)	3472
SmiMI	CAYNNNNRTG	3 cut(s)	831, 1361, 2211
SmlI	CTYRAG	5 cut(s)	1202, 2816, 2954, 3255, 3515
SmoI	CTYRAG	5 cut(s)	1202, 2816, 2954, 3255, 3515
SpeI	ACTAGT	1 cut(s)	2995
SphI	GCATGC	1 cut(s)	2815
SsiI	CCGC	9 cut(s)	65, 149, 448, 498, 928, 2266, 2692, 2937, 3758
SspI	AATATT	4 cut(s)	1250, 2355, 2609, 3364
SspMI	CTAG	3 cut(s)	839, 1515, 2996
SstI	GAGCTC	1 cut(s)	3313
StyD4I	CCNGG	6 cut(s)	128, 1164, 2681, 3111, 3317, 3717
StyI	CCWWGG	6 cut(s)	144, 195, 331, 342, 589, 1221
SwaI	ATTTAAAT	1 cut(s)	3472
TaaI	ACNGT	6 cut(s)	220, 986, 1694, 1910, 3100, 3337
TaiI	ACGT	1 cut(s)	760
TaqI	TCGA	8 cut(s)	179, 252, 1829, 2099, 2169, 2431, 3073, 3094
TatI	WGTACW	2 cut(s)	31, 3451
TauI	GCSGC	4 cut(s)	68, 152, 500, 2695
TscAI	CASTG	7 cut(s)	991, 1900, 2092, 2671, 2731, 3109, 3438
TseFI	GTSAC	8 cut(s)	859, 907, 1216, 2083, 2162, 2344, 2726, 3227
TseI	GCWGC	8 cut(s)	62, 262, 667, 1034, 1051, 1481, 2105, 3131
Tsp45I	GTSAC	8 cut(s)	859, 907, 1216, 2083, 2162, 2344, 2726, 3227
TspGWI	ACGGA	4 cut(s)	14, 1834, 1974, 2346
TspRI	CASTG	7 cut(s)	991, 1900, 2092, 2671, 2731, 3109, 3438
Vha464I	CTTAAG	1 cut(s)	2816
VneI	GTGCAC	1 cut(s)	3199
VpaK11BI	GGWCC	2 cut(s)	126, 335
XagI	CCTNNNNNAGG	2 cut(s)	16, 2519
XapI	RAATTY	5 cut(s)	503, 2015, 2334, 2902, 3558
XceI	RCATGY	5 cut(s)	1589, 2411, 2677, 2815, 2839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2884
XmiI	GTMKAC	1 cut(s)	2822
XspI	CTAG	3 cut(s)	839, 1515, 2996
Zsp2I	ATGCAT	2 cut(s)	2841, 2971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.