Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

10682089 .. 10687662

Gene Structure 5574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0068200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTATGGTTTGGTGGCTCTACAGGGTGACATGGTACAGAAGCTGATATATCAGATATACAAGAACCCTCATCCAAATATTGTTGTTTTAACAGTTGGAGCAGGTGATATAACAATTGTAGGCTCAAAGCTGCCCAAACTGGAGATAGAAAATATGGTAACCCCATCAGTGACCAAGTCTTTGCATGATGTAGATTTGGTTGGATGGAGATGTCAACTAGAACAAAAGAAAGCAGTTTTGGAAATTAGGAAAGATGATGACTACAATCGGAATCACCGGGTAGAAAGTAACAAGATTTGGTTGCAAATGAATATGAGGTATAAGCATAGAAAGCCAAATTCATCAAATGGTAGAACAAAGATTAGGCAAACACTGTTCATTTTGAATTGGCGGTTCTGCCCTCGCTTGAATTTTTTTGCGGCTCTGCCACTGACTAGGATATATCGCGTCTTCCCGTTGATTTCCTCTTTCTTCTACAGTCCTGTAGTCATCTTTTTCAATTATCAAGAACGATCAAGAGATAGAGAGAGAGAGAGAGAGAGAAATTGGGTGTGTTTCCATGAAGAGATAGAGAGGGAGACTTTGGATGGAAATTGGGGGTTTCGAATTTCTGGAATATTGTCTCGATTCGATTCTTCTGGGCTCGGTCTGTTAGCAAGAAGAAATAGCATTCTACTAGCAAGATATTCTCCAACTGAATTCGTCCTCAGTTTCATTAGCTTTGAAAAGTTTGAGGATTTCAGAGGCAAGGGTTGTCAACATCTAGGGTTGGTTGGTAATGGTTTGGTTTGGTTGAATCCACTGAACAGATTTGCATTTGGAATCGAGCAGAGGGAGCTAATTGTAGTTAGAAACATTGGGATGCAGCAAGTGTTCTTTGTACAGCAACTACTCCATAAGAAGACATTGCTTTGTTGGATGCAAAGTTCTTTCAAAAGGTTTGTTCTGCTTCAAGTTGTCAAAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

323

Amino Acids

38.06

Weight (kDa)

9.95

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AccII	CGCG	1 cut(s)	447
AciI	CCGC	2 cut(s)	391, 419
AcsI	RAATTY	4 cut(s)	337, 409, 606, 698
AfaI	GTAC	2 cut(s)	36, 882
AgsI	TTSAA	7 cut(s)	385, 409, 499, 725, 796, 934, 953
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AloI	GAACNNNNNNTCC	2 cut(s)	910, 942
AluBI	AGCT	4 cut(s)	43, 130, 720, 838
AluI	AGCT	4 cut(s)	43, 130, 720, 838
Alw26I	GTCTC	2 cut(s)	572, 627
AlwNI	CAGNNNCTG	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	130, 865
ApoI	RAATTY	4 cut(s)	337, 409, 606, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	38, 116, 266
AsuII	TTCGAA	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	645
BbsI	GAAGAC	2 cut(s)	442, 908
BbvI	GCAGC	2 cut(s)	117, 877
BccI	CCATC	3 cut(s)	172, 198, 581
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	572, 627
BfaI	CTAG	4 cut(s)	218, 435, 677, 764
BfmI	CTRYAG	3 cut(s)	20, 475, 483
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	131, 420, 866
BlsI	GCNGC	3 cut(s)	132, 421, 867
Bme1390I	CCNGG	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	852, 909
BpiI	GAAGAC	2 cut(s)	442, 908
BpmI	CTGGAG	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	905
BseGI	GGATG	5 cut(s)	70, 209, 592, 867, 924
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	117, 877
Bsh1236I	CGCG	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	572, 627
BsmI	GAATGC	1 cut(s)	669
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	1 cut(s)	512
BspACI	CCGC	2 cut(s)	391, 419
BspCNI	CTCAG	1 cut(s)	720
BspFNI	CGCG	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	92
BspT104I	TTCGAA	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	905
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	94, 375, 479
Bst6I	CTCTTC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	880
BstBI	TTCGAA	1 cut(s)	604
BstDEI	CTNAG	1 cut(s)	707
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	5 cut(s)	70, 209, 592, 867, 924
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	1 cut(s)	515
BstMAI	GTCTC	2 cut(s)	572, 627
BstMBI	GATC	1 cut(s)	512
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 835
BstPI	GGTNACC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	3 cut(s)	20, 475, 483
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	117, 877
BstV2I	GAAGAC	2 cut(s)	442, 908
BtsCI	GGATG	5 cut(s)	70, 209, 592, 867, 924
BtsIMutI	CAGTG	4 cut(s)	174, 371, 428, 800
BveI	ACCTGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	43
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	35, 881
CviAII	CATG	3 cut(s)	31, 185, 560
CviJI	RGCY	9 cut(s)	17, 43, 123, 130, 334, 422, 643, 720, 838
CviKI_1	RGCY	9 cut(s)	17, 43, 123, 130, 334, 422, 643, 720, 838
CviQI	GTAC	2 cut(s)	35, 881
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	1 cut(s)	514
DpnII	GATC	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	645
FaeI	CATG	3 cut(s)	34, 188, 563
FatI	CATG	3 cut(s)	30, 184, 559
Fnu4HI	GCNGC	3 cut(s)	131, 420, 866
FokI	GGATG	5 cut(s)	57, 216, 599, 874, 931
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	3 cut(s)	131, 420, 866
FspBI	CTAG	4 cut(s)	218, 435, 677, 764
GluI	GCNGC	3 cut(s)	131, 420, 866
GsuI	CTGGAG	1 cut(s)	161
HapII	CCGG	1 cut(s)	277
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	3 cut(s)	34, 188, 563
HincII	GTYRAC	2 cut(s)	215, 758
HindII	GTYRAC	2 cut(s)	215, 758
HinfI	GANTC	5 cut(s)	271, 627, 632, 796, 822
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	3 cut(s)	38, 116, 266
Hpy166II	GTNNAC	2 cut(s)	215, 758
Hpy188I	TCNGA	3 cut(s)	54, 270, 743
Hpy188III	TCNNGA	4 cut(s)	506, 516, 612, 624
Hpy8I	GTNNAC	2 cut(s)	215, 758
HpyCH4III	ACNGT	3 cut(s)	94, 375, 479
HpyCH4V	TGCA	5 cut(s)	184, 304, 815, 865, 922
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 835
HpyF3I	CTNAG	1 cut(s)	707
Hsp92II	CATG	3 cut(s)	34, 188, 563
Kzo9I	GATC	1 cut(s)	512
LmnI	GCTCC	2 cut(s)	98, 835
LpnPI	CCDG	7 cut(s)	8, 87, 125, 290, 495, 597, 624
Lsp1109I	GCAGC	2 cut(s)	117, 877
LweI	GCATC	2 cut(s)	852, 909
MaeI	CTAG	4 cut(s)	218, 435, 677, 764
MaeIII	GTNAC	4 cut(s)	26, 157, 169, 287
MalI	GATC	1 cut(s)	514
MboI	GATC	1 cut(s)	512
MboII	GAAGA	6 cut(s)	442, 463, 575, 627, 672, 913
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	645
MmeI	TCCRAC	4 cut(s)	76, 181, 716, 896
MnlI	CCTC	9 cut(s)	78, 309, 411, 475, 567, 716, 727, 737, 825
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	860
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	669
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	331, 835
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	34, 188, 563
NmuCI	GTSAC	2 cut(s)	26, 169
NspV	TTCGAA	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	5 cut(s)	271, 627, 632, 796, 822
PflFI	GACNNNGTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	132, 421, 867
PspEI	GGTNACC	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	36, 882
RsaNI	GTAC	2 cut(s)	35, 881
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	3 cut(s)	131, 420, 866
Sau3AI	GATC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	645
SetI	ASST	7 cut(s)	45, 106, 132, 320, 722, 840, 941
SfaNI	GCATC	2 cut(s)	852, 909
SfcI	CTRYAG	3 cut(s)	20, 475, 483
SfuI	TTCGAA	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	860
SsiI	CCGC	2 cut(s)	391, 419
SspI	AATATT	2 cut(s)	79, 618
SspMI	CTAG	4 cut(s)	218, 435, 677, 764
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	94, 375, 479
TaqI	TCGA	4 cut(s)	604, 625, 630, 825
TaqII	GACCGA	1 cut(s)	635
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	5 cut(s)	271, 627, 632, 796, 822
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	4 cut(s)	174, 378, 435, 807
TseFI	GTSAC	2 cut(s)	26, 169
TseI	GCWGC	2 cut(s)	130, 865
Tsp45I	GTSAC	2 cut(s)	26, 169
TspDTI	ATGAA	5 cut(s)	323, 330, 367, 576, 703
TspRI	CASTG	4 cut(s)	174, 378, 435, 807
Tth111I	GACNNNGTC	1 cut(s)	175
XapI	RAATTY	4 cut(s)	337, 409, 606, 698
XspI	CTAG	4 cut(s)	218, 435, 677, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.