Rh7AG045900

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000946
Physical Location & Seq
Forward (+)
3101919 .. 3102492
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG045900.1

Sequence Viewer

Length: 261 bp
ATGAAAGCCGAGTTGACTCTGGTCCGGAACGACATCGAGGACTTGAGCAAGTCGCGGATGGAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCAACGAGTCGAAGCGAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGTTGGAGATTGAGAAAGGTAGCATTTTGTGGAGTAGAGGTTGTTCAGAGGAGGATGGCGATGGTGGAGCAGAGGCCGAACGACGTCTTAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.86

Weight (kDa)

5.13

Isoelectric Point (pI)

72.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 250
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 247
AgsI TTSAA 2 cut(s) 79, 163
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 2 cut(s) 138, 149
AlwI GGATC 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 24
AoxI GGCC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 22, 111
AvaII GGWCC 2 cut(s) 22, 111
BanII GRGCYC 2 cut(s) 66, 109
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 3 cut(s) 52, 212, 218
BcoDI GTCTC 2 cut(s) 138, 149
Bme18I GGWCC 2 cut(s) 22, 111
BmgT120I GGNCC 2 cut(s) 22, 111
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
BseAI TCCGGA 1 cut(s) 24
BseGI GGATG 2 cut(s) 63, 223
BseRI GAGGAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 138, 149
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 66, 109
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 239
BspEI TCCGGA 1 cut(s) 24
BspFNI CGCG 1 cut(s) 55
BspPI GGATC 1 cut(s) 79
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 247
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 63, 223
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 138, 149
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 20
BstUI CGCG 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 63, 223
Cfr13I GGNCC 2 cut(s) 22, 111
CviJI RGCY 6 cut(s) 8, 64, 107, 137, 239, 255
CviKI_1 RGCY 6 cut(s) 8, 64, 107, 137, 239, 255
DdeI CTNAG 1 cut(s) 251
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 66, 109
Eco47I GGWCC 2 cut(s) 22, 111
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 66, 109
Esp3I CGTCTC 1 cut(s) 138
FokI GGATG 2 cut(s) 70, 230
FriOI GRGCYC 2 cut(s) 66, 109
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 3 cut(s) 16, 119, 129
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 25, 67
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 247
Hsp92I GRCGYC 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 61, 230
LpnPI CCDG 2 cut(s) 5, 38
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 66, 109
MluCI AATT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 10, 128
MmeI TCCRAC 2 cut(s) 138, 147
MnlI CCTC 6 cut(s) 31, 96, 194, 205, 208, 229
MroI TCCGGA 1 cut(s) 24
MseI TTAA 1 cut(s) 259
MspI CCGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 129
PleI GAGTC 2 cut(s) 10, 127
PpsI GAGTC 2 cut(s) 10, 127
PshAI GACNNNNGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 22, 111
PsrI GAACNNNNNNTAC 2 cut(s) 190, 222
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 259
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 22, 111
SchI GAGTC 2 cut(s) 10, 128
SduI GDGCHC 2 cut(s) 66, 109
SetI ASST 4 cut(s) 66, 184, 205, 250
SinI GGWCC 2 cut(s) 22, 111
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 150
SsiI CCGC 1 cut(s) 55
SstI GAGCTC 1 cut(s) 66
TaiI ACGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 36, 122, 132
TaqII GACCGA 1 cut(s) 99
TasI AATT 1 cut(s) 150
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 22, 111
ZraI GACGTC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.