Rw1G005590

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000946
Physical Location & Seq
Forward (+)
11196097 .. 11197723
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005590.1

Sequence Viewer

Length: 543 bp
ATGGCCGGAAGAGAACCTCGGCATCTCCACCGCCTTCCCCAAATTGTCAACACGACGATCCAGTCCCTCCTCGGGGACAATCAACTCCTCACGGCCACCCACGTGGCGCTCAAGCAGGACCTAACCACTGCTCAGAGTGACCTCCACAACATGAAGGTTGTCGCCGGCCAAATCAAATCCGAGAGGAATGCCGAAGTCCACGAGCTCTACGACGTAGACGCCATGAAAGCCGAGTTGACACTGGTCCGGAACGACATCGAGGACTTGAGCAAGTCGCGGATGGAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCGATGAGTCGAAGCAAATAGAAGCCATTAGAGACAAAATTGAGACTTTGAAGTTGGAGATTGAGAAAGGAAGCAAGACAATCCCTCTCAACTATGGCCGTATTCAGATGCAATTGTTGAAGAAGATCTGGGCCTACCCTTATAGCTACCCCCATAAACTGACCATTAGAGCCCCAAACTATGCCCCCAAGCCCCCCATGATTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.72

Weight (kDa)

9.44

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 277
AccIII TCCGGA 1 cut(s) 246
AciI CCGC 2 cut(s) 31, 277
AclWI GGATC 2 cut(s) 52, 301
AcoI YGGCCR 4 cut(s) 3, 93, 166, 430
AcvI CACGTG 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 72, 73
AgsI TTSAA 3 cut(s) 301, 385, 454
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 3 cut(s) 205, 286, 480
AluI AGCT 3 cut(s) 205, 286, 480
Alw21I GWGCWC 2 cut(s) 207, 288
Alw26I GTCTC 2 cut(s) 360, 371
AlwI GGATC 2 cut(s) 52, 301
Ama87I CYCGRG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 5 cut(s) 3, 93, 166, 430, 465
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 4 cut(s) 118, 244, 333, 465
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 3 cut(s) 118, 244, 333
BanII GRGCYC 4 cut(s) 207, 288, 331, 508
BauI CACGAG 2 cut(s) 200, 287
BbrPI CACGTG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 207, 288
BccI CCATC 1 cut(s) 274
BceAI ACGGC 2 cut(s) 108, 417
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BcoDI GTCTC 2 cut(s) 360, 371
BfoI RGCGCY 1 cut(s) 110
BglII AGATCT 1 cut(s) 459
Bme18I GGWCC 3 cut(s) 118, 244, 333
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 4 cut(s) 118, 244, 333, 465
BmsI GCATC 2 cut(s) 31, 432
BoxI GACNNNNGTC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 308
BpuEI CTTGAG 2 cut(s) 95, 286
BsaAI YACGTR 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 17, 70
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 73
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 61, 246
BseAI TCCGGA 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 17, 70
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 72, 73
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 61, 246
BseRI GAGGAG 2 cut(s) 59, 77
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 5 cut(s) 5, 95, 168, 432, 467
BsiHKAI GWGCWC 2 cut(s) 207, 288
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 3 cut(s) 6, 165, 247
BslFI GGGAC 2 cut(s) 49, 89
BslI CCNNNNNNNGG 2 cut(s) 72, 73
BsmAI GTCTC 2 cut(s) 360, 371
BsmFI GGGAC 2 cut(s) 49, 89
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 5 cut(s) 5, 95, 168, 432, 467
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 4 cut(s) 207, 288, 331, 508
Bsp13I TCCGGA 1 cut(s) 246
Bsp143I GATC 3 cut(s) 57, 306, 459
BspACI CCGC 2 cut(s) 31, 277
BspANI GGCC 5 cut(s) 5, 95, 168, 432, 467
BspCNI CTCAG 1 cut(s) 145
BspEI TCCGGA 1 cut(s) 246
BspFNI CGCG 1 cut(s) 277
BspPI GGATC 2 cut(s) 52, 301
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 61, 246
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 17, 70
BssMI GATC 3 cut(s) 57, 306, 459
BssNI GRCGYC 1 cut(s) 219
BssSI CACGAG 2 cut(s) 200, 287
Bst2BI CACGAG 2 cut(s) 200, 287
Bst6I CTCTTC 1 cut(s) 4
BstACI GRCGYC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 60, 309, 462
BstMAI GTCTC 2 cut(s) 360, 371
BstMBI GATC 3 cut(s) 57, 306, 459
BstMWI GCNNNNNNNGC 2 cut(s) 227, 283
BstPAI GACNNNNGTC 1 cut(s) 242
BstUI CGCG 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 459
BsuRI GGCC 5 cut(s) 5, 95, 168, 432, 467
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 239
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 118, 244, 333, 465
CpoI CGGWCCG 1 cut(s) 333
CseI GACGC 1 cut(s) 227
CspI CGGWCCG 1 cut(s) 333
CviAII CATG 3 cut(s) 151, 223, 532
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 59, 308, 461
DpnII GATC 3 cut(s) 57, 306, 459
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 4 cut(s) 3, 93, 166, 430
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Ecl136II GAGCTC 2 cut(s) 205, 286
Eco24I GRGCYC 4 cut(s) 207, 288, 331, 508
Eco47I GGWCC 3 cut(s) 118, 244, 333
Eco53kI GAGCTC 2 cut(s) 205, 286
Eco72I CACGTG 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 71
EcoICRI GAGCTC 2 cut(s) 205, 286
EcoO109I RGGNCCY 1 cut(s) 118
EcoT38I GRGCYC 4 cut(s) 207, 288, 331, 508
FaeI CATG 3 cut(s) 154, 226, 535
FaiI YATR 7 cut(s) 152, 224, 429, 477, 489, 516, 533
FaqI GGGAC 2 cut(s) 49, 89
FatI CATG 3 cut(s) 150, 222, 531
FblI GTMKAC 1 cut(s) 216
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 4 cut(s) 207, 288, 331, 508
GlaI GCGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 5 cut(s) 5, 95, 168, 432, 467
HapII CCGG 3 cut(s) 6, 165, 247
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 3 cut(s) 154, 226, 535
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 2 cut(s) 49, 237
HindII GTYRAC 2 cut(s) 49, 237
HinfI GANTC 1 cut(s) 341
HpaII CCGG 3 cut(s) 6, 165, 247
Hpy166II GTNNAC 4 cut(s) 49, 199, 217, 237
Hpy188I TCNGA 4 cut(s) 135, 181, 337, 441
Hpy188III TCNNGA 2 cut(s) 247, 289
Hpy8I GTNNAC 4 cut(s) 49, 199, 217, 237
Hpy99I CGWCG 2 cut(s) 58, 215
HpyAV CCTTC 2 cut(s) 44, 148
HpyCH4IV ACGT 2 cut(s) 102, 213
HpyCH4V TGCA 1 cut(s) 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 283
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 102, 213
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 3 cut(s) 154, 226, 535
HspAI GCGC 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 246
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 57, 306, 459
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 7 cut(s) 19, 74, 101, 178, 227, 260, 448
LweI GCATC 2 cut(s) 31, 432
MaeII ACGT 2 cut(s) 102, 213
MaeIII GTNAC 2 cut(s) 137, 289
MalI GATC 3 cut(s) 59, 308, 461
MboI GATC 3 cut(s) 57, 306, 459
MboII GAAGA 4 cut(s) 21, 313, 466, 469
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 4 cut(s) 207, 288, 331, 508
MluCI AATT 3 cut(s) 42, 372, 446
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 9 cut(s) 27, 77, 80, 98, 152, 177, 253, 318, 429
MroI TCCGGA 1 cut(s) 246
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 3 cut(s) 6, 165, 247
MunI CAATTG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 193
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 227, 283
NaeI GCCGGC 1 cut(s) 166
NdeII GATC 3 cut(s) 57, 306, 459
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 154, 226, 535
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 137, 289
OliI CACNNNNGTG 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 193
PdiI GCCGGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 349
PmaCI CACGTG 1 cut(s) 103
PmlI CACGTG 1 cut(s) 103
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 118
PshAI GACNNNNGTC 1 cut(s) 242
Psp124BI GAGCTC 2 cut(s) 207, 288
Psp5II RGGWCCY 1 cut(s) 118
PspCI CACGTG 1 cut(s) 103
PspPI GGNCC 4 cut(s) 118, 244, 333, 465
PspPPI RGGWCCY 1 cut(s) 118
PsuI RGATCY 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 101
Rsr2I CGGWCCG 1 cut(s) 333
RsrII CGGWCCG 1 cut(s) 333
SacI GAGCTC 2 cut(s) 207, 288
SaqAI TTAA 1 cut(s) 537
Sau3AI GATC 3 cut(s) 57, 306, 459
Sau96I GGNCC 4 cut(s) 118, 244, 333, 465
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 4 cut(s) 207, 288, 331, 508
SetI ASST 9 cut(s) 19, 105, 123, 144, 159, 207, 216, 288, 482
SfaNI GCATC 2 cut(s) 31, 432
SinI GGWCC 3 cut(s) 118, 244, 333
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 110, 265
SmoI CTYRAG 2 cut(s) 110, 265
Sse9I AATT 3 cut(s) 42, 372, 446
SsiI CCGC 2 cut(s) 31, 277
SstI GAGCTC 2 cut(s) 207, 288
TaiI ACGT 2 cut(s) 105, 216
TaqI TCGA 2 cut(s) 258, 344
TaqII GACCGA 1 cut(s) 321
TasI AATT 3 cut(s) 42, 372, 446
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 133, 246
TseFI GTSAC 2 cut(s) 137, 289
Tsp45I GTSAC 2 cut(s) 137, 289
TspDTI ATGAA 2 cut(s) 167, 239
TspRI CASTG 2 cut(s) 133, 246
VpaK11BI GGWCC 3 cut(s) 118, 244, 333
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.