Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000946

Physical Location & Seq

Genomic Coordinates Reverse (-)

36614246 .. 36619836

Gene Structure 5591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG341200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGATGACCTCGTCCTCTTCTTCGCGTTTGATTGAGAGGGGTATAGCTGGAATTGATACAAGGCAAAACTATGTGCGTGCATGGACCAACCAGCAGTTTTTCACCGCCGCTCAGAGCGACCTCCGCAACCTGAAGGCCGTCGCCGGCCAAATCAAATCCGAGAGGAACGCCGATGTGCGCGAGGTCTACGACAGGTCGTTGAAGCTGGATGACGAGCTCCGCGACCTGGACGCCATGAACGCCGAGTTGACTCTGGTCCGGAACGACATCGAGGAGTTGAGCACGTCGTGGATGGAGCTCGCGACCGAGTTGAACACGATCCAAGGAGAGATTAAGAGGGCTCGCTCCGATGAGTCGAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGCTGGAGATTGAGAAAGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.12

Weight (kDa)

4.86

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120
fragaria_vesca	FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520
malus_domestica	MD03G1060200.v1.1
prunus_persica	Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1
pyrus_communis	pycom03g04830
rosa_chinensis	RchiOBHm_Chr5g0071291
rosa_laevigata	RLG00000009353 RLG00000017208 RLG00000036199
rosa_multiflora	Rmu_sc0006355.1_g000001 Rmu_sc0021466.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009850 Rroxscaffold_2G00121970 Rroxscaffold_3G00239150 Rroxscaffold_3G00252320
rosa_rugosa	Rorug01G0283000.1 Rorug03G0129500 Rorug05G0411200 Rorug06G0055700 Rorug06G0254400 Rorug07G0181500
rosa_samantha	Rh1AG197900 Rh1AG198000 Rh1CG183100 Rh2AG366800 Rh2BG457700 Rh2DG371700 Rh2DG467400 Rh3BG341200 Rh5AG140900 Rh5AG467400 Rh5BG330800 Rh5BG485900 Rh5CG510300 Rh5DG342100 Rh5DG342200 Rh5DG497100 Rh6AG291600 Rh7AG024400 Rh7AG045900 Rh7AG434300 Rh7AG434400 Rh7CG041500 Rh7CG453300 Rh7DG045600
rosa_wichuraiana	Rw1G005590 Rw5G043420 Rw7G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	4 cut(s)	28, 183, 225, 305
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	4 cut(s)	108, 111, 127, 223
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	205, 316, 400
AjiI	CACGTC	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	5 cut(s)	50, 208, 220, 301, 403
AluI	AGCT	5 cut(s)	50, 208, 220, 301, 403
Alw21I	GWGCWC	3 cut(s)	222, 287, 303
Alw26I	GTCTC	2 cut(s)	375, 386
AlwI	GGATC	1 cut(s)	316
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	2 cut(s)	138, 148
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	87, 259
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	87, 259
BanII	GRGCYC	3 cut(s)	222, 303, 346
Bbv12I	GWGCWC	3 cut(s)	222, 287, 303
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	375, 386
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	87, 259
BmgBI	CACGTC	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	87, 259
BmrFI	CCNGG	1 cut(s)	230
BoxI	GACNNNNGTC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	3 cut(s)	12, 217, 300
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	290
Bsh1236I	CGCG	4 cut(s)	28, 183, 225, 305
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	140, 150
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	3 cut(s)	222, 287, 303
BsiSI	CCGG	2 cut(s)	147, 262
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	375, 386
BsmBI	CGTCTC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	140, 150
Bsp1286I	GDGCHC	4 cut(s)	222, 287, 303, 346
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	321
Bsp68I	TCGCGA	1 cut(s)	305
BspACI	CCGC	4 cut(s)	108, 111, 127, 223
BspANI	GGCC	2 cut(s)	140, 150
BspCNI	CTCAG	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	4 cut(s)	28, 183, 225, 305
BspPI	GGATC	1 cut(s)	316
BsrBI	CCGCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	4 cut(s)	81, 148, 303, 346
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	12, 217, 300
BstFNI	CGCG	4 cut(s)	28, 183, 225, 305
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	2 cut(s)	375, 386
BstMBI	GATC	1 cut(s)	321
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 242
BstNI	CCWGG	1 cut(s)	230
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	4 cut(s)	28, 183, 225, 305
BsuRI	GGCC	2 cut(s)	140, 150
BtrI	CACGTC	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	12, 217, 300
BtuMI	TCGCGA	1 cut(s)	305
Cac8I	GCNNGC	4 cut(s)	81, 148, 303, 346
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	87, 259
CseI	GACGC	1 cut(s)	242
CviAII	CATG	2 cut(s)	84, 238
CviJI	RGCY	9 cut(s)	50, 140, 150, 208, 220, 301, 344, 374, 403
CviKI_1	RGCY	9 cut(s)	50, 140, 150, 208, 220, 301, 344, 374, 403
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
DraIII	CACNNNGTG	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	2 cut(s)	220, 301
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	3 cut(s)	222, 303, 346
Eco47I	GGWCC	2 cut(s)	87, 259
Eco53kI	GAGCTC	2 cut(s)	220, 301
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	2 cut(s)	220, 301
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	3 cut(s)	222, 303, 346
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	2 cut(s)	87, 241
FaiI	YATR	4 cut(s)	47, 75, 85, 239
FatI	CATG	2 cut(s)	83, 237
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	3 cut(s)	19, 224, 307
FriOI	GRGCYC	3 cut(s)	222, 303, 346
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	140, 150
HapII	CCGG	2 cut(s)	147, 262
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	87, 241
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	253, 356
HpaII	CCGG	2 cut(s)	147, 262
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	190, 252
Hpy188I	TCNGA	3 cut(s)	117, 163, 352
Hpy188III	TCNNGA	2 cut(s)	262, 304
Hpy8I	GTNNAC	2 cut(s)	190, 252
Hpy99I	CGWCG	2 cut(s)	146, 292
HpyAV	CCTTC	2 cut(s)	130, 414
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 242
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	87, 241
HspAI	GCGC	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	261
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	225, 298, 353
MaeII	ACGT	1 cut(s)	287
MalI	GATC	1 cut(s)	323
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	12, 15
MhlI	GDGCHC	4 cut(s)	222, 287, 303, 346
MluCI	AATT	2 cut(s)	54, 387
MlyI	GAGTC	2 cut(s)	247, 365
MnlI	CCTC	8 cut(s)	22, 28, 33, 134, 159, 178, 268, 333
MroI	TCCGGA	1 cut(s)	261
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	336
MspI	CCGG	2 cut(s)	147, 262
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	4 cut(s)	28, 183, 225, 305
MwoI	GCNNNNNNNGC	2 cut(s)	126, 242
NaeI	GCCGGC	1 cut(s)	148
NdeII	GATC	1 cut(s)	321
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	87, 241
NmeAIII	GCCGAG	1 cut(s)	271
NruI	TCGCGA	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	247, 364
PpsI	GAGTC	2 cut(s)	247, 364
PshAI	GACNNNNGTC	1 cut(s)	257
Psp124BI	GAGCTC	2 cut(s)	222, 303
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	87, 259
PsyI	GACNNNGTC	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	305
SacI	GAGCTC	2 cut(s)	222, 303
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	87, 259
SchI	GAGTC	2 cut(s)	247, 365
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	4 cut(s)	222, 287, 303, 346
SinI	GGWCC	2 cut(s)	87, 259
Sse9I	AATT	2 cut(s)	54, 387
SsiI	CCGC	4 cut(s)	108, 111, 127, 223
SstI	GAGCTC	2 cut(s)	222, 303
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	325
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	3 cut(s)	273, 359, 369
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	2 cut(s)	54, 387
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	254
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	87, 259
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.