Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021466.1

Orthogroup ID

OG0000946

Physical Location & Seq

Genomic Coordinates Reverse (-)

943 .. 1176

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021466.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

gacaggtcgttaaagctgaacgacgagctccgcgacctggacgccatgaacgccgagttgactctggtccagaatgacatcgaggacttgagcacgtcgcggatagagctcacgaccgagttgaacacgatccaaggagatattgagagggctagctccgacgagtcgaagcaaatcgaagccattagagacgaaattgagactttgaagctggagattgagaaaggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.8

Weight (kDa)

4.25

Isoelectric Point (pI)

65.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120
fragaria_vesca	FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520
malus_domestica	MD03G1060200.v1.1
prunus_persica	Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1
pyrus_communis	pycom03g04830
rosa_chinensis	RchiOBHm_Chr5g0071291
rosa_laevigata	RLG00000009353 RLG00000017208 RLG00000036199
rosa_multiflora	Rmu_sc0006355.1_g000001 Rmu_sc0021466.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009850 Rroxscaffold_2G00121970 Rroxscaffold_3G00239150 Rroxscaffold_3G00252320
rosa_rugosa	Rorug01G0283000.1 Rorug03G0129500 Rorug05G0411200 Rorug06G0055700 Rorug06G0254400 Rorug07G0181500
rosa_samantha	Rh1AG197900 Rh1AG198000 Rh1CG183100 Rh2AG366800 Rh2BG457700 Rh2DG371700 Rh2DG467400 Rh3BG341200 Rh5AG140900 Rh5AG467400 Rh5BG330800 Rh5BG485900 Rh5CG510300 Rh5DG342100 Rh5DG342200 Rh5DG497100 Rh6AG291600 Rh7AG024400 Rh7AG045900 Rh7AG434300 Rh7AG434400 Rh7CG041500 Rh7CG453300 Rh7DG045600
rosa_wichuraiana	Rw1G005590 Rw5G043420 Rw7G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	33, 100
AciI	CCGC	2 cut(s)	31, 100
AclWI	GGATC	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	124, 208
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	5 cut(s)	16, 28, 109, 156, 211
AluI	AGCT	5 cut(s)	16, 28, 109, 156, 211
Alw21I	GWGCWC	3 cut(s)	30, 95, 111
Alw26I	GTCTC	2 cut(s)	183, 194
AlwI	GGATC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	30, 111
Bbv12I	GWGCWC	3 cut(s)	30, 95, 111
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	183, 194
BfaI	CTAG	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	38
BmtI	GCTAGC	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	37
Bsh1236I	CGCG	2 cut(s)	33, 100
Bsh1285I	CGRYCG	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	3 cut(s)	30, 95, 111
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	183, 194
BsmBI	CGTCTC	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	30, 95, 111
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	2 cut(s)	31, 100
BspFNI	CGCG	2 cut(s)	33, 100
BspOI	GCTAGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	154
BstFNI	CGCG	2 cut(s)	33, 100
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	2 cut(s)	183, 194
BstMBI	GATC	1 cut(s)	129
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 106
BstNI	CCWGG	1 cut(s)	38
BstPAI	GACNNNNGTC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	2 cut(s)	33, 100
BtrI	CACGTC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	50
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	16, 28, 109, 152, 156, 182, 211
CviKI_1	RGCY	7 cut(s)	16, 28, 109, 152, 156, 182, 211
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Ecl136II	GAGCTC	2 cut(s)	28, 109
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	30, 111
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	2 cut(s)	28, 109
EcoICRI	GAGCTC	2 cut(s)	28, 109
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	30, 111
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	1 cut(s)	49
FaiI	YATR	1 cut(s)	47
FatI	CATG	1 cut(s)	45
FriOI	GRGCYC	2 cut(s)	30, 111
FspBI	CTAG	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	61, 164
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	70, 112
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	3 cut(s)	26, 100, 164
HpyAV	CCTTC	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 106
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	33, 161
LpnPI	CCDG	5 cut(s)	23, 50, 50, 83, 197
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	95
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MhlI	GDGCHC	3 cut(s)	30, 95, 111
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	55, 173
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	76, 141
MseI	TTAA	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	2 cut(s)	33, 100
MwoI	GCNNNNNNNGC	2 cut(s)	50, 106
NdeII	GATC	1 cut(s)	129
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PleI	GAGTC	2 cut(s)	55, 172
PpsI	GAGTC	2 cut(s)	55, 172
PshAI	GACNNNNGTC	1 cut(s)	65
Psp124BI	GAGCTC	2 cut(s)	30, 111
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	67
SacI	GAGCTC	2 cut(s)	30, 111
SaqAI	TTAA	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	55, 173
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	3 cut(s)	30, 95, 111
SetI	ASST	9 cut(s)	8, 18, 30, 39, 98, 111, 158, 213, 233
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	2 cut(s)	31, 100
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	2 cut(s)	30, 111
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	133
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	81, 167, 177
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	67
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.