Rh7AG434400

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000946
Physical Location & Seq
Forward (+)
58459017 .. 58459205
189 bp
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UTR
Exon/CDS
Intron
Rh7AG434400.1

Sequence Viewer

Length: 189 bp
ATGAAAGTTGAGTTGACTCTGGTCCGGAATGACATCGAGGACTTGAGCAAGTCGCGGATGGAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCGACGAGTCGAAGCAAATCAAAGCCATTAGAGACGAAATTGAGACTTTGAAGTTGGAGATTAAGAAAGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.35

Weight (kDa)

9.45

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 79
AgsI TTSAA 2 cut(s) 79, 163
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 2 cut(s) 138, 149
AlwI GGATC 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 22, 111
AvaII GGWCC 2 cut(s) 22, 111
BanII GRGCYC 2 cut(s) 66, 109
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 138, 149
Bme18I GGWCC 2 cut(s) 22, 111
BmgT120I GGNCC 2 cut(s) 22, 111
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 24
BseGI GGATG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 138, 149
BsmBI CGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 66, 109
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 55
BspEI TCCGGA 1 cut(s) 24
BspFNI CGCG 1 cut(s) 55
BspPI GGATC 1 cut(s) 79
BssMI GATC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 138, 149
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 20
BstUI CGCG 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 22, 111
CpoI CGGWCCG 1 cut(s) 111
CspI CGGWCCG 1 cut(s) 111
CviJI RGCY 3 cut(s) 64, 107, 137
CviKI_1 RGCY 3 cut(s) 64, 107, 137
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 66, 109
Eco47I GGWCC 2 cut(s) 22, 111
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 66, 109
Esp3I CGTCTC 1 cut(s) 138
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 2 cut(s) 66, 109
HapII CCGG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 16, 119
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 25, 67
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 2 cut(s) 5, 38
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 66, 109
MluCI AATT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 10, 128
MmeI TCCRAC 2 cut(s) 138, 147
MnlI CCTC 2 cut(s) 31, 96
MroI TCCGGA 1 cut(s) 24
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 67
PleI GAGTC 2 cut(s) 10, 127
PpsI GAGTC 2 cut(s) 10, 127
PshAI GACNNNNGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 22, 111
Rsr2I CGGWCCG 1 cut(s) 111
RsrII CGGWCCG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 22, 111
SchI GAGTC 2 cut(s) 10, 128
SduI GDGCHC 2 cut(s) 66, 109
SetI ASST 2 cut(s) 66, 188
SinI GGWCC 2 cut(s) 22, 111
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 150
SsiI CCGC 1 cut(s) 55
SstI GAGCTC 1 cut(s) 66
TaqI TCGA 2 cut(s) 36, 122
TaqII GACCGA 1 cut(s) 99
TasI AATT 1 cut(s) 150
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 22, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.