Rh7DG045600

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000946
Physical Location & Seq
Forward (+)
3456007 .. 3456790
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG045600.1

Sequence Viewer

Length: 471 bp
ATGGCAACGCGAGATCCAGTCCCTCCTCGGGACAATCAACTCCTCGCAGCTACCCACGTGGCGCTCAAGCAGGACCTAACCACTGCTCAGAGTGACCTCCGCAACCTGAAGGTCGTCGCCGGCCAAATCAAATCCGAGAGGAACGCCGAAGTCCACGAGGTCTACGACAGGTCGTTGAAGCTGGACGACGAGCTCTGCAACGTAGACGCCATGAAAGCCGAGTTGACTCTGGTCCGGAACGACATCGAGGACTTGAGCAAGTCGCGGATGGAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCGACGAGTCGAAGCGAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGTTGGAGATTGAGAAGGGAAGCATTTTGTGGAGTAGAGGCTGTTCAGAGGAGGATGGCGATGGTGGAGCAGAGGCCGAACGACGTCTTAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.64

Weight (kDa)

5.04

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 460
AccI GTMKAC 2 cut(s) 162, 204
AccII CGCG 2 cut(s) 10, 265
AccIII TCCGGA 1 cut(s) 234
AciI CCGC 2 cut(s) 100, 265
AclWI GGATC 2 cut(s) 8, 289
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 128
AcvI CACGTG 1 cut(s) 58
AcyI GRCGYC 2 cut(s) 207, 457
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 3 cut(s) 178, 289, 373
AluBI AGCT 4 cut(s) 50, 181, 193, 274
AluI AGCT 4 cut(s) 50, 181, 193, 274
Alw21I GWGCWC 2 cut(s) 195, 276
Alw26I GTCTC 2 cut(s) 348, 359
AlwI GGATC 2 cut(s) 8, 289
Ama87I CYCGRG 1 cut(s) 27
Aor13HI TCCGGA 1 cut(s) 234
AoxI GGCC 2 cut(s) 121, 447
ApeKI GCWGC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 3 cut(s) 73, 232, 321
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 3 cut(s) 73, 232, 321
BanII GRGCYC 3 cut(s) 195, 276, 319
BauI CACGAG 2 cut(s) 155, 275
BbrPI CACGTG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 2 cut(s) 195, 276
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 262, 422, 428
BcoDI GTCTC 2 cut(s) 348, 359
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 3 cut(s) 73, 232, 321
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 73, 232, 321
BoxI GACNNNNGTC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 296
BpuEI CTTGAG 2 cut(s) 50, 274
BsaAI YACGTR 1 cut(s) 58
BsaHI GRCGYC 2 cut(s) 207, 457
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 273, 433
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 3 cut(s) 15, 32, 437
BseXI GCAGC 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 10, 265
BshFI GGCC 2 cut(s) 123, 449
BsiHKAI GWGCWC 2 cut(s) 195, 276
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 120, 235
BslFI GGGAC 2 cut(s) 5, 44
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 348, 359
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 5, 44
BsnI GGCC 2 cut(s) 123, 449
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 3 cut(s) 195, 276, 319
Bsp13I TCCGGA 1 cut(s) 234
Bsp143I GATC 2 cut(s) 13, 294
BspACI CCGC 2 cut(s) 100, 265
BspANI GGCC 2 cut(s) 123, 449
BspCNI CTCAG 1 cut(s) 100
BspEI TCCGGA 1 cut(s) 234
BspFNI CGCG 2 cut(s) 10, 265
BspPI GGATC 2 cut(s) 8, 289
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 13, 294
BssNI GRCGYC 2 cut(s) 207, 457
BssSI CACGAG 2 cut(s) 155, 275
Bst2BI CACGAG 2 cut(s) 155, 275
BstACI GRCGYC 2 cut(s) 207, 457
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 87, 461
BstF5I GGATG 2 cut(s) 273, 433
BstFNI CGCG 2 cut(s) 10, 265
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 16, 297
BstMAI GTCTC 2 cut(s) 348, 359
BstMBI GATC 2 cut(s) 13, 294
BstMWI GCNNNNNNNGC 2 cut(s) 215, 271
BstPAI GACNNNNGTC 1 cut(s) 230
BstUI CGCG 2 cut(s) 10, 265
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 2 cut(s) 123, 449
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 273, 433
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 3 cut(s) 73, 232, 321
CpoI CGGWCCG 1 cut(s) 321
CseI GACGC 1 cut(s) 215
CspI CGGWCCG 1 cut(s) 321
CviAII CATG 1 cut(s) 211
DdeI CTNAG 2 cut(s) 87, 461
DpnI GATC 2 cut(s) 15, 296
DpnII GATC 2 cut(s) 13, 294
EaeI YGGCCR 1 cut(s) 121
Ecl136II GAGCTC 2 cut(s) 193, 274
Eco24I GRGCYC 3 cut(s) 195, 276, 319
Eco47I GGWCC 3 cut(s) 73, 232, 321
Eco53kI GAGCTC 2 cut(s) 193, 274
Eco57I CTGAAG 1 cut(s) 128
Eco72I CACGTG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 27
EcoICRI GAGCTC 2 cut(s) 193, 274
EcoO109I RGGNCCY 1 cut(s) 73
EcoT38I GRGCYC 3 cut(s) 195, 276, 319
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 1 cut(s) 214
FaiI YATR 1 cut(s) 212
FaqI GGGAC 2 cut(s) 5, 44
FatI CATG 1 cut(s) 210
FblI GTMKAC 2 cut(s) 162, 204
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 280, 440
FriOI GRGCYC 3 cut(s) 195, 276, 319
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 2 cut(s) 123, 449
HapII CCGG 2 cut(s) 120, 235
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 2 cut(s) 207, 457
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 3 cut(s) 226, 329, 339
HpaII CCGG 2 cut(s) 120, 235
Hpy166II GTNNAC 4 cut(s) 154, 163, 205, 225
Hpy188I TCNGA 4 cut(s) 90, 136, 325, 421
Hpy188III TCNNGA 3 cut(s) 29, 235, 277
Hpy8I GTNNAC 4 cut(s) 154, 163, 205, 225
Hpy99I CGWCG 4 cut(s) 119, 191, 329, 459
HpyAV CCTTC 2 cut(s) 103, 382
HpyCH4IV ACGT 3 cut(s) 57, 201, 457
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 271
HpyF3I CTNAG 2 cut(s) 87, 461
HpySE526I ACGT 3 cut(s) 57, 201, 457
Hsp92I GRCGYC 2 cut(s) 207, 457
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 234
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 13, 294
LmnI GCTCC 2 cut(s) 271, 440
LpnPI CCDG 8 cut(s) 30, 56, 119, 133, 154, 167, 215, 248
Lsp1109I GCAGC 1 cut(s) 59
MaeII ACGT 3 cut(s) 57, 201, 457
MaeIII GTNAC 2 cut(s) 92, 277
MalI GATC 2 cut(s) 15, 296
MboI GATC 2 cut(s) 13, 294
MboII GAAGA 1 cut(s) 301
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 3 cut(s) 195, 276, 319
MluCI AATT 1 cut(s) 360
MlyI GAGTC 2 cut(s) 220, 338
MmeI TCCRAC 2 cut(s) 348, 357
MroI TCCGGA 1 cut(s) 234
MroNI GCCGGC 1 cut(s) 119
MseI TTAA 1 cut(s) 469
MspI CCGG 2 cut(s) 120, 235
MvnI CGCG 2 cut(s) 10, 265
MwoI GCNNNNNNNGC 2 cut(s) 215, 271
NaeI GCCGGC 1 cut(s) 121
NdeII GATC 2 cut(s) 13, 294
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 214
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 92, 277
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 339
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 220, 337
PmaCI CACGTG 1 cut(s) 58
PmlI CACGTG 1 cut(s) 58
PpsI GAGTC 2 cut(s) 220, 337
Ppu21I YACGTR 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 230
Psp124BI GAGCTC 2 cut(s) 195, 276
Psp5II RGGWCCY 1 cut(s) 73
PspCI CACGTG 1 cut(s) 58
PspPI GGNCC 3 cut(s) 73, 232, 321
PspPPI RGGWCCY 1 cut(s) 73
PsrI GAACNNNNNNTAC 2 cut(s) 400, 432
PsuI RGATCY 1 cut(s) 13
Rsr2I CGGWCCG 1 cut(s) 321
RsrII CGGWCCG 1 cut(s) 321
SacI GAGCTC 2 cut(s) 195, 276
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 13, 294
Sau96I GGNCC 3 cut(s) 73, 232, 321
SchI GAGTC 2 cut(s) 220, 338
SduI GDGCHC 3 cut(s) 195, 276, 319
SinI GGWCC 3 cut(s) 73, 232, 321
SmlI CTYRAG 2 cut(s) 65, 253
SmoI CTYRAG 2 cut(s) 65, 253
Sse9I AATT 1 cut(s) 360
SsiI CCGC 2 cut(s) 100, 265
SstI GAGCTC 2 cut(s) 195, 276
TaiI ACGT 3 cut(s) 60, 204, 460
TaqI TCGA 3 cut(s) 246, 332, 342
TaqII GACCGA 1 cut(s) 309
TasI AATT 1 cut(s) 360
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 92, 277
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 92, 277
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 3 cut(s) 73, 232, 321
XmiI GTMKAC 2 cut(s) 162, 204
ZraI GACGTC 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.