Rw7G006960

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000946
Physical Location & Seq
Reverse (-)
5993794 .. 5999591
5798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006960.1

Sequence Viewer

Length: 624 bp
ATGGCCGGAAGAGAGCCTTGGCATCTCCACCGCCTTCCCCAAATCGTCAACACAACGACCCTCGAGGACCGCATCGATCTCTATGACCTCCGCAACCTGAAGGTCGTCGCCGGCCAAATCAAATCCAAGAGAAACACCGAAGTCCACGAGGTATACCACAGGTCATTGAAGTTGGACAACGAGATCTGCGACGTAGACGCCATGAAAGCCGAGTTGACTCTGGTCCGGAACGACATCGAGGACTTGAGCAAGTCGCGGATACAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCGACGAGTCAAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGTTGGAGATTGAGAAAGGAAGAGAGAAGTCAATGATTCATTTAACTACTAAACTGTTCATTTTTGCATTTCGCCTCTTTCAGTCTAACACGAACCCTAGCCCCCAATTTTTTTCCCCAATTTCTTCCTCAATCACCAGTTTTAGGGGGGAAGTTTCTTCATGTGAGGTGTTTGGCTCACATCCTCAATCTCATTGCTGTTGGTGGCTTGGAATGATCAGCAATGTGAGAGTGAATGAGATGCTGCTGCTGCTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

24.07

Weight (kDa)

7.06

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 62
AccI GTMKAC 2 cut(s) 153, 195
AccII CGCG 1 cut(s) 256
AccIII TCCGGA 1 cut(s) 225
AciI CCGC 4 cut(s) 31, 70, 91, 256
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 2 cut(s) 3, 112
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 507
AgsI TTSAA 3 cut(s) 169, 280, 364
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 339, 350
AlwI GGATC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 62
Aor13HI TCCGGA 1 cut(s) 225
AoxI GGCC 2 cut(s) 3, 112
ApeKI GCWGC 4 cut(s) 607, 610, 613, 616
AspS9I GGNCC 3 cut(s) 67, 223, 312
AsuHPI GGTGA 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 3 cut(s) 67, 223, 312
BanII GRGCYC 1 cut(s) 310
BauI CACGAG 2 cut(s) 146, 266
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 594, 597, 600, 603
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 1 cut(s) 579
BcoDI GTCTC 2 cut(s) 339, 350
BfaI CTAG 1 cut(s) 462
BfuI GTATCC 1 cut(s) 252
BglII AGATCT 1 cut(s) 183
BisI GCNGC 4 cut(s) 608, 611, 614, 617
BlsI GCNGC 4 cut(s) 609, 612, 615, 618
Bme18I GGWCC 3 cut(s) 67, 223, 312
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 67, 223, 312
BmsI GCATC 3 cut(s) 31, 81, 594
BoxI GACNNNNGTC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 265
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 507
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 2 cut(s) 556, 592
BseAI TCCGGA 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 1 cut(s) 507
BseMI GCAATG 2 cut(s) 556, 592
BseNI ACTGG 1 cut(s) 501
BseXI GCAGC 4 cut(s) 594, 597, 600, 603
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 5, 114
BshVI ATCGAT 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 3 cut(s) 6, 111, 226
BslI CCNNNNNNNGG 1 cut(s) 507
BsmAI GTCTC 2 cut(s) 339, 350
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 5, 114
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 310
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 4 cut(s) 76, 183, 285, 579
BspACI CCGC 4 cut(s) 31, 70, 91, 256
BspANI GGCC 2 cut(s) 5, 114
BspDI ATCGAT 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 225
BspFNI CGCG 1 cut(s) 256
BspPI GGATC 1 cut(s) 280
BsrDI GCAATG 2 cut(s) 556, 592
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 501
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 4 cut(s) 76, 183, 285, 579
BssNAI GTATAC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 2 cut(s) 146, 266
BssT1I CCWWGG 1 cut(s) 17
Bst1107I GTATAC 1 cut(s) 154
Bst2BI CACGAG 2 cut(s) 146, 266
Bst4CI ACNGT 1 cut(s) 420
Bst6I CTCTTC 2 cut(s) 4, 379
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 4 cut(s) 79, 186, 288, 582
BstMAI GTCTC 2 cut(s) 339, 350
BstMBI GATC 4 cut(s) 76, 183, 285, 579
BstMWI GCNNNNNNNGC 4 cut(s) 206, 262, 613, 616
BstPAI GACNNNNGTC 1 cut(s) 221
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 594, 597, 600, 603
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BstZ17I GTATAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 75
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 5, 114
BsuTUI ATCGAT 1 cut(s) 75
BtsCI GGATG 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 67, 223, 312
ClaI ATCGAT 1 cut(s) 75
CpoI CGGWCCG 1 cut(s) 312
CseI GACGC 1 cut(s) 206
CspI CGGWCCG 1 cut(s) 312
CviAII CATG 2 cut(s) 202, 525
DpnI GATC 4 cut(s) 78, 185, 287, 581
DpnII GATC 4 cut(s) 76, 183, 285, 579
EaeI YGGCCR 2 cut(s) 3, 112
Eam1104I CTCTTC 2 cut(s) 4, 379
EarI CTCTTC 2 cut(s) 4, 379
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 3 cut(s) 67, 223, 312
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 2 cut(s) 205, 528
FaiI YATR 4 cut(s) 84, 154, 203, 526
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 2 cut(s) 201, 524
FbaI TGATCA 1 cut(s) 579
FblI GTMKAC 2 cut(s) 153, 195
Fnu4HI GCNGC 4 cut(s) 608, 611, 614, 617
FokI GGATG 1 cut(s) 531
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 4 cut(s) 608, 611, 614, 617
FspBI CTAG 1 cut(s) 462
GluI GCNGC 4 cut(s) 608, 611, 614, 617
HaeIII GGCC 2 cut(s) 5, 114
HapII CCGG 3 cut(s) 6, 111, 226
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 2 cut(s) 205, 528
HincII GTYRAC 2 cut(s) 49, 216
HindII GTYRAC 2 cut(s) 49, 216
HinfI GANTC 3 cut(s) 217, 320, 400
HpaII CCGG 3 cut(s) 6, 111, 226
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 5 cut(s) 49, 145, 154, 196, 216
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 226, 268
Hpy8I GTNNAC 5 cut(s) 49, 145, 154, 196, 216
Hpy99I CGWCG 3 cut(s) 110, 194, 320
HpyAV CCTTC 2 cut(s) 44, 94
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 431, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 262, 613, 616
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 2 cut(s) 205, 528
Kpn2I TCCGGA 1 cut(s) 225
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 4 cut(s) 76, 183, 285, 579
LpnPI CCDG 7 cut(s) 19, 110, 124, 145, 206, 239, 514
Lsp1109I GCAGC 4 cut(s) 594, 597, 600, 603
LweI GCATC 3 cut(s) 31, 81, 594
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 268
MalI GATC 4 cut(s) 78, 185, 287, 581
MboI GATC 4 cut(s) 76, 183, 285, 579
MboII GAAGA 5 cut(s) 21, 292, 396, 480, 513
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 3 cut(s) 351, 470, 483
MlyI GAGTC 2 cut(s) 211, 329
MmeI TCCRAC 3 cut(s) 153, 339, 348
MroI TCCGGA 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 1 cut(s) 407
MspI CCGG 3 cut(s) 6, 111, 226
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 4 cut(s) 206, 262, 613, 616
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 4 cut(s) 76, 183, 285, 579
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 205, 528
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 268
PaeR7I CTCGAG 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 4 cut(s) 609, 612, 615, 618
PleI GAGTC 2 cut(s) 211, 328
PpsI GAGTC 2 cut(s) 211, 328
PshAI GACNNNNGTC 1 cut(s) 221
PspPI GGNCC 3 cut(s) 67, 223, 312
PspXI VCTCGAGB 1 cut(s) 62
PsuI RGATCY 1 cut(s) 183
Rsr2I CGGWCCG 1 cut(s) 312
RsrII CGGWCCG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 4 cut(s) 608, 611, 614, 617
Sau3AI GATC 4 cut(s) 76, 183, 285, 579
Sau96I GGNCC 3 cut(s) 67, 223, 312
SchI GAGTC 2 cut(s) 211, 329
SduI GDGCHC 1 cut(s) 310
SetI ASST 8 cut(s) 90, 99, 105, 153, 164, 195, 267, 534
SfaNI GCATC 3 cut(s) 31, 81, 594
Sfr274I CTCGAG 1 cut(s) 62
SinI GGWCC 3 cut(s) 67, 223, 312
SlaI CTCGAG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 62, 244
SmoI CTYRAG 2 cut(s) 62, 244
Sse9I AATT 3 cut(s) 351, 470, 483
SsiI CCGC 4 cut(s) 31, 70, 91, 256
SspMI CTAG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 420
TaiI ACGT 1 cut(s) 195
TaqI TCGA 4 cut(s) 63, 75, 237, 333
TaqII GACCGA 1 cut(s) 300
TasI AATT 3 cut(s) 351, 470, 483
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 4 cut(s) 607, 610, 613, 616
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 4 cut(s) 218, 392, 412, 513
VpaK11BI GGWCC 3 cut(s) 67, 223, 312
XhoI CTCGAG 1 cut(s) 62
XmiI GTMKAC 2 cut(s) 153, 195
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.