Rh7CG041500

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000946
Physical Location & Seq
Forward (+)
2757673 .. 2758742
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG041500.1

Sequence Viewer

Length: 600 bp
ATGACCCAGACACCTCCAAAAAGCACGACACCACAACCCCTACCAGAACAGACTCCTCCTCCATCCTACTCCTCACCACCACCCACAAAACCTAATGCATCAGCACTTCCTGCTGTGATCTTCAACCTCTTCGACGACTTCATCAACAACTTCGTCGACTCTCCGTCCCTCCTCGCGGCCACCCACGTGGCGCTCAAGCAGGACCTAACCACCGCTCAGAGTGACCTCCGCAACCTGAAGGTTGTCGGCCGCCAAATCAAATCCGAGAGGAACGCCGAAGTCCACGAGGTCTACGACAGGTCGTTGAAGCTGGACGACAAGCTCTACGACGTAGACGCCATGAAAGCCGAGTTGACTCTGGTCCGGAACGACATCGAGGACTTGAGCAAGTCGCGGATGGAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCGACGAGTCGAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGTTGGAGATTAAGAAAGGAAGCATTTTGTGGAGTAGAGGCTGTTCAGAGGAGGATGGCGATGGTGGAGCAGAGGTCGAACGACGTCTTAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.31

Weight (kDa)

5.14

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 589
AccBSI CCGCTC 1 cut(s) 215
AccI GTMKAC 3 cut(s) 156, 291, 333
AccII CGCG 2 cut(s) 176, 394
AccIII TCCGGA 1 cut(s) 363
AciI CCGC 5 cut(s) 176, 213, 229, 250, 394
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 2 cut(s) 177, 247
AcuI CTGAAG 1 cut(s) 257
AcvI CACGTG 1 cut(s) 187
AcyI GRCGYC 2 cut(s) 336, 586
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 4 cut(s) 124, 307, 418, 502
AhdI GACNNNNNGTC 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 3 cut(s) 310, 322, 403
AluI AGCT 3 cut(s) 310, 322, 403
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 477, 488
AlwI GGATC 1 cut(s) 418
Aor13HI TCCGGA 1 cut(s) 363
AoxI GGCC 2 cut(s) 177, 247
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 3 cut(s) 202, 361, 450
AsuHPI GGTGA 1 cut(s) 66
AvaII GGWCC 3 cut(s) 202, 361, 450
BanII GRGCYC 2 cut(s) 405, 448
BauI CACGAG 2 cut(s) 284, 404
BbrPI CACGTG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 405
BccI CCATC 4 cut(s) 70, 391, 551, 557
BcoDI GTCTC 2 cut(s) 477, 488
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 2 cut(s) 177, 250
BlsI GCNGC 2 cut(s) 178, 251
Bme18I GGWCC 3 cut(s) 202, 361, 450
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 202, 361, 450
BmsI GCATC 1 cut(s) 107
BoxI GACNNNNGTC 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 425
BpuEI CTTGAG 2 cut(s) 179, 403
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 2 cut(s) 336, 586
BsaWI WCCGGW 1 cut(s) 363
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 363
BseGI GGATG 3 cut(s) 62, 402, 562
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 5 cut(s) 45, 48, 61, 161, 566
BseX3I CGGCCG 1 cut(s) 247
Bsh1236I CGCG 2 cut(s) 176, 394
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 2 cut(s) 179, 249
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 1 cut(s) 364
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 477, 488
BsmBI CGTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 2 cut(s) 179, 249
Bsp1286I GDGCHC 2 cut(s) 405, 448
Bsp13I TCCGGA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 117, 423
BspACI CCGC 5 cut(s) 176, 213, 229, 250, 394
BspANI GGCC 2 cut(s) 179, 249
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 363
BspFNI CGCG 2 cut(s) 176, 394
BspPI GGATC 1 cut(s) 418
BsrBI CCGCTC 1 cut(s) 215
BssMI GATC 2 cut(s) 117, 423
BssNI GRCGYC 2 cut(s) 336, 586
BssSI CACGAG 2 cut(s) 284, 404
Bst2BI CACGAG 2 cut(s) 284, 404
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 2 cut(s) 336, 586
BstAPI GCANNNNNTGC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 216, 590
BstF5I GGATG 3 cut(s) 62, 402, 562
BstFNI CGCG 2 cut(s) 176, 394
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 2 cut(s) 120, 426
BstMAI GTCTC 2 cut(s) 477, 488
BstMBI GATC 2 cut(s) 117, 423
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 110, 344, 400
BstPAI GACNNNNGTC 1 cut(s) 359
BstUI CGCG 2 cut(s) 176, 394
BstV2I GAAGAC 1 cut(s) 425
BstXI CCANNNNNNTGG 1 cut(s) 187
BstZI CGGCCG 1 cut(s) 247
BsuRI GGCC 2 cut(s) 179, 249
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 3 cut(s) 62, 402, 562
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 3 cut(s) 202, 361, 450
CpoI CGGWCCG 1 cut(s) 450
CseI GACGC 1 cut(s) 344
CspI CGGWCCG 1 cut(s) 450
CviAII CATG 1 cut(s) 340
DdeI CTNAG 2 cut(s) 216, 590
DpnI GATC 2 cut(s) 119, 425
DpnII GATC 2 cut(s) 117, 423
DriI GACNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 2 cut(s) 177, 247
EagI CGGCCG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 134
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 403
EclXI CGGCCG 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 405, 448
Eco47I GGWCC 3 cut(s) 202, 361, 450
Eco52I CGGCCG 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 257
Eco72I CACGTG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 405, 448
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 1 cut(s) 343
FaiI YATR 1 cut(s) 341
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 339
FblI GTMKAC 3 cut(s) 156, 291, 333
Fnu4HI GCNGC 2 cut(s) 177, 250
FokI GGATG 3 cut(s) 49, 409, 569
FriOI GRGCYC 2 cut(s) 405, 448
Fsp4HI GCNGC 2 cut(s) 177, 250
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 177, 250
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 2 cut(s) 179, 249
HapII CCGG 1 cut(s) 364
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 2 cut(s) 336, 586
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 2 cut(s) 157, 354
HindII GTYRAC 2 cut(s) 157, 354
HinfI GANTC 4 cut(s) 52, 158, 355, 458
HpaII CCGG 1 cut(s) 364
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 5 cut(s) 157, 283, 292, 334, 354
Hpy188I TCNGA 4 cut(s) 219, 265, 454, 550
Hpy188III TCNNGA 2 cut(s) 364, 406
Hpy8I GTNNAC 5 cut(s) 157, 283, 292, 334, 354
Hpy99I CGWCG 5 cut(s) 137, 158, 332, 458, 588
HpyAV CCTTC 1 cut(s) 232
HpyCH4IV ACGT 3 cut(s) 186, 330, 586
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 344, 400
HpyF3I CTNAG 2 cut(s) 216, 590
HpySE526I ACGT 3 cut(s) 186, 330, 586
Hsp92I GRCGYC 2 cut(s) 336, 586
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 1 cut(s) 191
Kpn2I TCCGGA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 117, 423
LmnI GCTCC 2 cut(s) 400, 569
LpnPI CCDG 9 cut(s) 20, 57, 123, 185, 248, 283, 296, 344, 377
LweI GCATC 1 cut(s) 107
MaeII ACGT 3 cut(s) 186, 330, 586
MaeIII GTNAC 2 cut(s) 221, 406
MalI GATC 2 cut(s) 119, 425
MbiI CCGCTC 1 cut(s) 215
MboI GATC 2 cut(s) 117, 423
MboII GAAGA 3 cut(s) 112, 121, 430
MhlI GDGCHC 2 cut(s) 405, 448
MluCI AATT 1 cut(s) 489
MlyI GAGTC 4 cut(s) 46, 152, 349, 467
MmeI TCCRAC 2 cut(s) 477, 486
Mph1103I ATGCAT 1 cut(s) 100
MroI TCCGGA 1 cut(s) 363
MseI TTAA 2 cut(s) 513, 598
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 1 cut(s) 364
MvnI CGCG 2 cut(s) 176, 394
MwoI GCNNNNNNNGC 3 cut(s) 110, 344, 400
NdeII GATC 2 cut(s) 117, 423
NlaIII CATG 1 cut(s) 343
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 221, 406
NsiI ATGCAT 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PkrI GCNGC 2 cut(s) 178, 251
PleI GAGTC 4 cut(s) 46, 152, 349, 466
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
PpsI GAGTC 4 cut(s) 46, 152, 349, 466
Ppu21I YACGTR 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 202
PspCI CACGTG 1 cut(s) 187
PspPI GGNCC 3 cut(s) 202, 361, 450
PspPPI RGGWCCY 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
RseI CAYNNNNRTG 1 cut(s) 185
Rsr2I CGGWCCG 1 cut(s) 450
RsrII CGGWCCG 1 cut(s) 450
SacI GAGCTC 1 cut(s) 405
SalI GTCGAC 1 cut(s) 155
SaqAI TTAA 2 cut(s) 513, 598
SatI GCNGC 2 cut(s) 177, 250
Sau3AI GATC 2 cut(s) 117, 423
Sau96I GGNCC 3 cut(s) 202, 361, 450
SchI GAGTC 4 cut(s) 46, 152, 349, 467
SduI GDGCHC 2 cut(s) 405, 448
SfaNI GCATC 1 cut(s) 107
SinI GGWCC 3 cut(s) 202, 361, 450
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 194, 382
SmoI CTYRAG 2 cut(s) 194, 382
Sse9I AATT 1 cut(s) 489
SsiI CCGC 5 cut(s) 176, 213, 229, 250, 394
SstI GAGCTC 1 cut(s) 405
TaiI ACGT 3 cut(s) 189, 333, 589
TaqI TCGA 6 cut(s) 132, 156, 375, 461, 471, 579
TaqII GACCGA 1 cut(s) 438
TasI AATT 1 cut(s) 489
TauI GCSGC 2 cut(s) 179, 252
Tru1I TTAA 2 cut(s) 513, 598
Tru9I TTAA 2 cut(s) 513, 598
TseFI GTSAC 2 cut(s) 221, 406
Tsp45I GTSAC 2 cut(s) 221, 406
TspDTI ATGAA 2 cut(s) 130, 356
TspGWI ACGGA 1 cut(s) 153
VpaK11BI GGWCC 3 cut(s) 202, 361, 450
XmiI GTMKAC 3 cut(s) 156, 291, 333
ZraI GACGTC 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.