Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000946

Physical Location & Seq

Genomic Coordinates Forward (+)

46624102 .. 46624452

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG342100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGACCAAAACACCTCCAAAAAGCACGACACCACAACCCCTACCAGAACAGACTCCTCCTCCATCCTACTCCTCACCACCACCCACAAAACCTAATGCACCAGCACTTCCTGCTGTGATCTTCAACCTCTTCGACGACTTCATCAACAACTTCGTCGACCCGCCAGTCCGGTCTTCAGTCAACCCCAAACACGCACTCTCCACCGCCCTCAGTGAGATCAGTTATGGCCGGAAGAGAGGCTCGGCATCTCCACCTCCTTCCCCAAATTGTCAACACGACGGCCCTCGAGGACCGCATCGATATCTAGCAACTCGAGATCCAGTCCCTCCTCGGGGACAATCAACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

116

Amino Acids

12.47

Weight (kDa)

9.8

Isoelectric Point (pI)

67.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120
fragaria_vesca	FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520
malus_domestica	MD03G1060200.v1.1
prunus_persica	Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1
pyrus_communis	pycom03g04830
rosa_chinensis	RchiOBHm_Chr5g0071291
rosa_laevigata	RLG00000009353 RLG00000017208 RLG00000036199
rosa_multiflora	Rmu_sc0006355.1_g000001 Rmu_sc0021466.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009850 Rroxscaffold_2G00121970 Rroxscaffold_3G00239150 Rroxscaffold_3G00252320
rosa_rugosa	Rorug01G0283000.1 Rorug03G0129500 Rorug05G0411200 Rorug06G0055700 Rorug06G0254400 Rorug07G0181500
rosa_samantha	Rh1AG197900 Rh1AG198000 Rh1CG183100 Rh2AG366800 Rh2BG457700 Rh2DG371700 Rh2DG467400 Rh3BG341200 Rh5AG140900 Rh5AG467400 Rh5BG330800 Rh5BG485900 Rh5CG510300 Rh5DG342100 Rh5DG342200 Rh5DG497100 Rh6AG291600 Rh7AG024400 Rh7AG045900 Rh7AG434300 Rh7AG434400 Rh7CG041500 Rh7CG453300 Rh7DG045600
rosa_wichuraiana	Rw1G005590 Rw5G043420 Rw7G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AbsI	CCTCGAGG	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	161, 204, 293
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	331, 332
AgsI	TTSAA	1 cut(s)	124
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	3 cut(s)	285, 312, 330
AoxI	GGCC	2 cut(s)	226, 280
AspS9I	GGNCC	2 cut(s)	281, 290
AsuHPI	GGTGA	1 cut(s)	66
AvaI	CYCGRG	3 cut(s)	285, 312, 330
AvaII	GGWCC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	165
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	3 cut(s)	285, 312, 330
BmgT120I	GGNCC	2 cut(s)	281, 290
BmsI	GCATC	2 cut(s)	254, 304
BpiI	GAAGAC	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 332
Bse1I	ACTGG	2 cut(s)	164, 320
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	331, 332
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	164, 320
BseRI	GAGGAG	4 cut(s)	45, 48, 61, 318
BshFI	GGCC	2 cut(s)	228, 282
BshVI	ATCGAT	1 cut(s)	298
BsiHKCI	CYCGRG	3 cut(s)	285, 312, 330
BsiSI	CCGG	2 cut(s)	169, 229
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	331, 332
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	228, 282
BsoBI	CYCGRG	3 cut(s)	285, 312, 330
Bsp143I	GATC	3 cut(s)	117, 216, 316
BspACI	CCGC	3 cut(s)	161, 204, 293
BspANI	GGCC	2 cut(s)	228, 282
BspCNI	CTCAG	1 cut(s)	222
BspDI	ATCGAT	1 cut(s)	298
BspPI	GGATC	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	164, 320
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	117, 216, 316
Bst6I	CTCTTC	2 cut(s)	134, 227
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	120, 219, 319
BstMBI	GATC	3 cut(s)	117, 216, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	228, 282
BsuTUI	ATCGAT	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	281, 290
ClaI	ATCGAT	1 cut(s)	298
CviJI	RGCY	3 cut(s)	228, 240, 282
CviKI_1	RGCY	3 cut(s)	228, 240, 282
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	119, 218, 318
DpnII	GATC	3 cut(s)	117, 216, 316
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	134, 227
EarI	CTCTTC	2 cut(s)	134, 227
Eco32I	GATATC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	3 cut(s)	285, 312, 330
EcoRV	GATATC	1 cut(s)	302
FaiI	YATR	1 cut(s)	225
FaqI	GGGAC	1 cut(s)	308
FauI	CCCGC	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	156
FokI	GGATG	1 cut(s)	49
FspBI	CTAG	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	228, 282
HapII	CCGG	2 cut(s)	169, 229
HincII	GTYRAC	3 cut(s)	157, 181, 272
HindII	GTYRAC	3 cut(s)	157, 181, 272
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	169, 229
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	3 cut(s)	157, 181, 272
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	3 cut(s)	157, 181, 272
Hpy99I	CGWCG	3 cut(s)	137, 158, 281
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	117, 216, 316
LpnPI	CCDG	7 cut(s)	57, 114, 123, 177, 182, 242, 333
LweI	GCATC	2 cut(s)	254, 304
MaeI	CTAG	1 cut(s)	305
MalI	GATC	3 cut(s)	119, 218, 318
MboI	GATC	3 cut(s)	117, 216, 316
MboII	GAAGA	4 cut(s)	112, 121, 165, 244
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	46
MspI	CCGG	2 cut(s)	169, 229
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	3 cut(s)	117, 216, 316
NmeAIII	GCCGAG	1 cut(s)	221
PaeR7I	CTCGAG	2 cut(s)	285, 312
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	281, 290
PspXI	VCTCGAGB	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	155
Sau3AI	GATC	3 cut(s)	117, 216, 316
Sau96I	GGNCC	2 cut(s)	281, 290
SchI	GAGTC	1 cut(s)	46
SetI	ASST	4 cut(s)	16, 94, 129, 256
SfaNI	GCATC	2 cut(s)	254, 304
Sfr274I	CTCGAG	2 cut(s)	285, 312
SinI	GGWCC	1 cut(s)	290
SlaI	CTCGAG	2 cut(s)	285, 312
SmlI	CTYRAG	2 cut(s)	285, 312
SmoI	CTYRAG	2 cut(s)	285, 312
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	3 cut(s)	161, 204, 293
SspMI	CTAG	1 cut(s)	305
TaqI	TCGA	5 cut(s)	132, 156, 286, 298, 313
TasI	AATT	1 cut(s)	265
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	290
XhoI	CTCGAG	2 cut(s)	285, 312
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.