Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000946

Physical Location & Seq

Genomic Coordinates Forward (+)

14142429 .. 14143766

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAACGCCGAGTTGACTTTGGTCCGGAAAGACATCGAGGACTTGAGCACGTCAAGGATGGAGCTCGCGACCAAGTTGAAGACGATCCAAGGAGAGATTGAGAGGGCTCGCTCCGACGAGTCGAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGCTGGAGATTGAGAAAGGAAGGCTGTTAAACCCTAGCCGCCTGAGCAGGGTATTTCAATCATGGAATCCGGTGCCTGCCTCCTCTCTAAGTGGGGGTTTCCTCTCCACACCCCGCTGTCCGATCGCAGCCCTCCAAAGTCGTTTTATAATCATCCATCAACATCAATTGAGTGCTATTGCGGATTGTGCTACTTGCCAGAGCAATCTCGCCTTGGAAAGCACAGTTTGCTTGGAGACGACCCTTGATGCCCTCGAATTTTCAGGAGAAGTGATAAGCATCTGGGAGCCCAAGGAGGGGCCGGCGAGTGTCATGCAATATTGTCCTTGGGGCGGCAATGTGGAAGATGACAGAGTGCAAGAGGCGGCGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.7

Weight (kDa)

4.8

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120
fragaria_vesca	FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520
malus_domestica	MD03G1060200.v1.1
prunus_persica	Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1
pyrus_communis	pycom03g04830
rosa_chinensis	RchiOBHm_Chr5g0071291
rosa_laevigata	RLG00000009353 RLG00000017208 RLG00000036199
rosa_multiflora	Rmu_sc0006355.1_g000001 Rmu_sc0021466.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009850 Rroxscaffold_2G00121970 Rroxscaffold_3G00239150 Rroxscaffold_3G00252320
rosa_rugosa	Rorug01G0283000.1 Rorug03G0129500 Rorug05G0411200 Rorug06G0055700 Rorug06G0254400 Rorug07G0181500
rosa_samantha	Rh1AG197900 Rh1AG198000 Rh1CG183100 Rh2AG366800 Rh2BG457700 Rh2DG371700 Rh2DG467400 Rh3BG341200 Rh5AG140900 Rh5AG467400 Rh5BG330800 Rh5BG485900 Rh5CG510300 Rh5DG342100 Rh5DG342200 Rh5DG497100 Rh6AG291600 Rh7AG024400 Rh7AG045900 Rh7AG434300 Rh7AG434400 Rh7CG041500 Rh7CG453300 Rh7DG045600
rosa_wichuraiana	Rw1G005590 Rw5G043420 Rw7G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	235
AccII	CGCG	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	24
AciI	CCGC	6 cut(s)	202, 277, 344, 495, 527, 530
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	419
AfiI	CCNNNNNNNGG	4 cut(s)	211, 458, 459, 494
AgsI	TTSAA	3 cut(s)	79, 163, 221
AjiI	CACGTC	1 cut(s)	51
AluBI	AGCT	2 cut(s)	64, 166
AluI	AGCT	2 cut(s)	64, 166
Alw21I	GWGCWC	2 cut(s)	50, 66
Alw26I	GTCTC	3 cut(s)	138, 149, 392
AlwI	GGATC	1 cut(s)	79
Aor13HI	TCCGGA	1 cut(s)	24
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	22, 461
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	3 cut(s)	66, 109, 453
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	50, 66
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	52, 327
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BcoDI	GTCTC	3 cut(s)	138, 149, 392
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	5 cut(s)	202, 291, 496, 528, 531
BlsI	GCNGC	5 cut(s)	203, 292, 497, 529, 532
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	22, 461
BmiI	GGNNCC	3 cut(s)	237, 450, 462
BmsI	GCATC	2 cut(s)	400, 450
BoxI	GACNNNNGTC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	440
BsaJI	CCNNGG	4 cut(s)	88, 375, 453, 488
BsaWI	WCCGGW	2 cut(s)	24, 232
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 458, 459, 494
Bse118I	RCCGGY	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	505
Bse8I	GATNNNNATC	1 cut(s)	440
BseAI	TCCGGA	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	88, 375, 453, 488
BseGI	GGATG	2 cut(s)	63, 315
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	4 cut(s)	211, 458, 459, 494
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	463
BshNI	GGYRCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	50, 66
BsiSI	CCGG	3 cut(s)	25, 233, 464
BslI	CCNNNNNNNGG	4 cut(s)	211, 458, 459, 494
BsmAI	GTCTC	3 cut(s)	138, 149, 392
BsmBI	CGTCTC	2 cut(s)	138, 392
BsnI	GGCC	1 cut(s)	463
Bsp1286I	GDGCHC	4 cut(s)	50, 66, 109, 453
Bsp13I	TCCGGA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	84, 285
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	6 cut(s)	202, 277, 344, 495, 527, 530
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	198
BspEI	TCCGGA	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	237, 450, 462
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	88, 375, 453, 488
BssMI	GATC	2 cut(s)	84, 285
BssT1I	CCWWGG	4 cut(s)	88, 375, 453, 488
Bst4CI	ACNGT	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	66, 109, 240, 465
BstDEI	CTNAG	2 cut(s)	206, 251
BstF5I	GGATG	2 cut(s)	63, 315
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	87, 288
BstMAI	GTCTC	3 cut(s)	138, 149, 392
BstMBI	GATC	2 cut(s)	84, 285
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 350, 390
BstPAI	GACNNNNGTC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	63, 315
BtuMI	TCGCGA	1 cut(s)	68
Cac8I	GCNNGC	4 cut(s)	66, 109, 240, 465
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	22, 461
CviAII	CATG	2 cut(s)	225, 475
CviJI	RGCY	9 cut(s)	64, 107, 137, 166, 187, 201, 293, 451, 463
CviKI_1	RGCY	9 cut(s)	64, 107, 137, 166, 187, 201, 293, 451, 463
DdeI	CTNAG	2 cut(s)	206, 251
DpnI	GATC	2 cut(s)	86, 287
DpnII	GATC	2 cut(s)	84, 285
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	4 cut(s)	88, 375, 453, 488
Eco24I	GRGCYC	3 cut(s)	66, 109, 453
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoT14I	CCWWGG	4 cut(s)	88, 375, 453, 488
EcoT38I	GRGCYC	3 cut(s)	66, 109, 453
ErhI	CCWWGG	4 cut(s)	88, 375, 453, 488
Esp3I	CGTCTC	2 cut(s)	138, 392
FaeI	CATG	2 cut(s)	228, 478
FaiI	YATR	3 cut(s)	226, 311, 476
FatI	CATG	2 cut(s)	224, 474
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	5 cut(s)	202, 291, 496, 528, 531
FokI	GGATG	2 cut(s)	70, 302
FriOI	GRGCYC	3 cut(s)	66, 109, 453
Fsp4HI	GCNGC	5 cut(s)	202, 291, 496, 528, 531
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	5 cut(s)	202, 291, 496, 528, 531
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	3 cut(s)	25, 233, 464
Hin1II	CATG	2 cut(s)	228, 478
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	119, 229
HpaII	CCGG	3 cut(s)	25, 233, 464
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	115, 285
Hpy188III	TCNNGA	3 cut(s)	25, 67, 426
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	478, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 350, 390
HpyF3I	CTNAG	2 cut(s)	206, 251
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	228, 478
Kpn2I	TCCGGA	1 cut(s)	24
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	84, 285
LmnI	GCTCC	3 cut(s)	61, 116, 448
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	2 cut(s)	400, 450
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	50
MalI	GATC	2 cut(s)	86, 287
MboI	GATC	2 cut(s)	84, 285
MboII	GAAGA	2 cut(s)	91, 518
MfeI	CAATTG	1 cut(s)	329
MhlI	GDGCHC	4 cut(s)	50, 66, 109, 453
MluCI	AATT	3 cut(s)	150, 329, 419
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	9 cut(s)	31, 96, 253, 256, 275, 305, 425, 451, 517
MroI	TCCGGA	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	463
MseI	TTAA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	3 cut(s)	25, 233, 464
MunI	CAATTG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	207, 350, 390
NaeI	GCCGGC	1 cut(s)	465
NdeII	GATC	2 cut(s)	84, 285
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	2 cut(s)	228, 478
NlaIV	GGNNCC	3 cut(s)	237, 450, 462
NmeAIII	GCCGAG	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	203, 292, 497, 529, 532
Ple19I	CGATCG	1 cut(s)	288
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	237, 450, 462
PspPI	GGNCC	2 cut(s)	22, 461
PvuI	CGATCG	1 cut(s)	288
RruI	TCGCGA	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	5 cut(s)	202, 291, 496, 528, 531
Sau3AI	GATC	2 cut(s)	84, 285
Sau96I	GGNCC	2 cut(s)	22, 461
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	4 cut(s)	50, 66, 109, 453
SetI	ASST	3 cut(s)	53, 66, 168
SfaNI	GCATC	2 cut(s)	400, 450
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	3 cut(s)	150, 329, 419
SsiI	CCGC	6 cut(s)	202, 277, 344, 495, 527, 530
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	66
StyI	CCWWGG	4 cut(s)	88, 375, 453, 488
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	4 cut(s)	36, 122, 132, 417
TasI	AATT	3 cut(s)	150, 329, 419
TauI	GCSGC	4 cut(s)	204, 498, 530, 533
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.