Rh5DG342200

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000946
Physical Location & Seq
Forward (+)
46624616 .. 46626258
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG342200.1

Sequence Viewer

Length: 390 bp
ATGAAAGCCGAGTTGACTCTGGTCCGGAACGACATCGAGGACTTGAGCAAGTTGCGGATGGAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCGACGAGTCGAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGTTAGAGATTAAGAAAGGAAGGGCGACCGGCAGGAACAAGGGCTGCGACGGAAATGCCGAGCTTCTCCTGGAGTTGATCGACGAGGCTGGAGATGTCCGCATTCCAAAACGACGCGTTTCCTCTTCCTTCCTCTTCCTAAGAAGGTTCTCAGTGCATGCCGACGCCGGAACACAAAACGGACTCCGTGAGAGCGGTTACAAAGAGCAGAGACAACTTGACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.8

Weight (kDa)

8.76

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 357
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 3 cut(s) 55, 262, 357
AclWI GGATC 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 327
AflIII ACRYGT 2 cut(s) 277, 384
AgsI TTSAA 2 cut(s) 79, 163
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 2 cut(s) 64, 226
AluI AGCT 2 cut(s) 64, 226
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 3 cut(s) 138, 149, 367
AlwI GGATC 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 22, 111
AvaII GGWCC 2 cut(s) 22, 111
BanII GRGCYC 2 cut(s) 66, 109
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 138, 149, 367
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 2 cut(s) 22, 111
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 22, 111
BmrFI CCNGG 1 cut(s) 233
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 2 cut(s) 254, 273
BpuEI CTTGAG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 24
Bse118I RCCGGY 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 3 cut(s) 25, 192, 330
BsmAI GTCTC 3 cut(s) 138, 149, 367
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 66, 109
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 84, 240
BspACI CCGC 3 cut(s) 55, 262, 357
BspCNI CTCAG 1 cut(s) 326
BspEI TCCGGA 1 cut(s) 24
BspFNI CGCG 1 cut(s) 279
BspPI GGATC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssMI GATC 2 cut(s) 84, 240
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 292, 302
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 302, 313
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 2 cut(s) 87, 243
BstMAI GTCTC 3 cut(s) 138, 149, 367
BstMBI GATC 2 cut(s) 84, 240
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 22, 111
CpoI CGGWCCG 1 cut(s) 111
CseI GACGC 2 cut(s) 285, 335
CspI CGGWCCG 1 cut(s) 111
CviAII CATG 1 cut(s) 320
CviJI RGCY 7 cut(s) 8, 64, 107, 137, 207, 226, 251
CviKI_1 RGCY 7 cut(s) 8, 64, 107, 137, 207, 226, 251
DdeI CTNAG 2 cut(s) 302, 313
DpnI GATC 2 cut(s) 86, 242
DpnII GATC 2 cut(s) 84, 240
Eam1104I CTCTTC 2 cut(s) 292, 302
EarI CTCTTC 2 cut(s) 292, 302
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 66, 109
Eco47I GGWCC 2 cut(s) 22, 111
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 231
EcoT38I GRGCYC 2 cut(s) 66, 109
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 1 cut(s) 323
FaiI YATR 1 cut(s) 321
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 2 cut(s) 66, 109
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
GsuI CTGGAG 2 cut(s) 254, 273
HapII CCGG 3 cut(s) 25, 192, 330
HgaI GACGC 2 cut(s) 285, 335
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 1 cut(s) 323
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 3 cut(s) 16, 119, 345
HpaII CCGG 3 cut(s) 25, 192, 330
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 25, 67
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 5 cut(s) 119, 215, 248, 279, 329
HpyAV CCTTC 3 cut(s) 177, 300, 301
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 302, 313
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 1 cut(s) 323
Kpn2I TCCGGA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 84, 240
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 8 cut(s) 5, 38, 181, 205, 218, 237, 245, 343
Lsp1109I GCAGC 1 cut(s) 194
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 67, 359
MalI GATC 2 cut(s) 86, 242
MbiI CCGCTC 1 cut(s) 357
MboI GATC 2 cut(s) 84, 240
MboII GAAGA 3 cut(s) 91, 279, 289
MhlI GDGCHC 2 cut(s) 66, 109
MluCI AATT 1 cut(s) 150
MluI ACGCGT 1 cut(s) 277
MlyI GAGTC 3 cut(s) 10, 128, 339
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 31, 96, 241, 295, 305
MroI TCCGGA 1 cut(s) 24
MseI TTAA 1 cut(s) 174
MspI CCGG 3 cut(s) 25, 192, 330
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 2 cut(s) 84, 240
NlaIII CATG 1 cut(s) 323
NmeAIII GCCGAG 2 cut(s) 34, 247
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 323
PaeI GCATGC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 3 cut(s) 10, 127, 339
PpsI GAGTC 3 cut(s) 10, 127, 339
PshAI GACNNNNGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 2 cut(s) 22, 111
Rsr2I CGGWCCG 1 cut(s) 111
RsrII CGGWCCG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 84, 240
Sau96I GGNCC 2 cut(s) 22, 111
SchI GAGTC 3 cut(s) 10, 128, 339
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 66, 109
SetI ASST 4 cut(s) 66, 228, 311, 387
SinI GGWCC 2 cut(s) 22, 111
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SphI GCATGC 1 cut(s) 323
Sse9I AATT 1 cut(s) 150
SsiI CCGC 3 cut(s) 55, 262, 357
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 231
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 36, 122, 132, 243
TaqII GACCGA 1 cut(s) 99
TasI AATT 1 cut(s) 150
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 228, 338, 357
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 22, 111
XceI RCATGY 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.