Rroxscaffold_3G00239150

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000946
Physical Location & Seq
Reverse (-)
28823590 .. 28825906
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239150.1

Sequence Viewer

Length: 453 bp
ATGGAGTCTCTACAAAAACATTGCTTGCTGCAAAGAGCAAAGAGAGAGCCGAGAAAAAAAAAACGATGCCAAAGAATTTCAAATCACATTCTCACAAAGTCACAAATAACTTCCACTTGTCCTATTTTAAAGCGAGAAATATACTTAAATGAGAAAAGTTGTTTGATCCAAGGAGAGATTGAGAGGGCTCGGTCCGACGAGTCGAAGCAAATCGAAGCCATTAGAGGCGAAATTGAGACTTTGAAGCTGGAGATTGAGAAAGGAAGGACTGCGGTTGAGATTGAGAAGAAAACACGAGCTAGTAACCTTGAGCATCGTCAAGCTATGGAGAATTATATGGCTAAGTTGGCTCTCGAAATCGAAAAACTTCATGGGGAGTTGGCAAATGCGAGAGAAGAGAGCAAGGGCTGCAATAGCACTGCAAATCCGAGTGATTGTTCCCCTTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.17

Weight (kDa)

9.05

Isoelectric Point (pI)

72.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 75
AgsI TTSAA 3 cut(s) 81, 244, 447
AluBI AGCT 3 cut(s) 247, 299, 323
AluI AGCT 3 cut(s) 247, 299, 323
Alw26I GTCTC 2 cut(s) 12, 230
AlwI GGATC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 28, 408
ApoI RAATTY 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 192
AvaII GGWCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 1 cut(s) 294
BbvI GCAGC 2 cut(s) 15, 395
BcoDI GTCTC 2 cut(s) 12, 230
BfaI CTAG 1 cut(s) 300
BisI GCNGC 2 cut(s) 29, 409
BlsI GCNGC 2 cut(s) 30, 410
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmsI GCATC 2 cut(s) 56, 322
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 15, 395
BsmAI GTCTC 2 cut(s) 12, 230
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 1 cut(s) 272
BspPI GGATC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 342
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 2 cut(s) 12, 230
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 347, 408, 414
BstV1I GCAGC 2 cut(s) 15, 395
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 192
CpoI CGGWCCG 1 cut(s) 192
CspI CGGWCCG 1 cut(s) 192
CviAII CATG 1 cut(s) 371
CviJI RGCY 9 cut(s) 49, 188, 218, 247, 299, 323, 341, 350, 408
CviKI_1 RGCY 9 cut(s) 49, 188, 218, 247, 299, 323, 341, 350, 408
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 374
FaiI YATR 5 cut(s) 142, 326, 336, 338, 372
FatI CATG 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 29, 409
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 29, 409
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 29, 409
GsuI CTGGAG 1 cut(s) 269
Hin1II CATG 1 cut(s) 374
HinfI GANTC 2 cut(s) 5, 200
Hpy188I TCNGA 2 cut(s) 196, 429
Hpy188III TCNNGA 1 cut(s) 353
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 258, 453
HpyCH4V TGCA 3 cut(s) 31, 411, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 408, 414
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 1 cut(s) 374
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 1 cut(s) 233
Lsp1109I GCAGC 2 cut(s) 15, 395
LweI GCATC 2 cut(s) 56, 322
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 99, 302
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 298, 407
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 3 cut(s) 75, 231, 331
MlyI GAGTC 2 cut(s) 14, 209
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 2 cut(s) 177, 218
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 128, 146
MwoI GCNNNNNNNGC 3 cut(s) 347, 408, 414
NdeII GATC 1 cut(s) 165
NlaIII CATG 1 cut(s) 374
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 366
PkrI GCNGC 2 cut(s) 30, 410
PleI GAGTC 2 cut(s) 13, 208
PpsI GAGTC 2 cut(s) 13, 208
PspPI GGNCC 1 cut(s) 192
Rsr2I CGGWCCG 1 cut(s) 192
RsrII CGGWCCG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 128, 146
SatI GCNGC 2 cut(s) 29, 409
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 2 cut(s) 14, 209
SduI GDGCHC 1 cut(s) 190
SetI ASST 4 cut(s) 249, 301, 309, 325
SfaNI GCATC 2 cut(s) 56, 322
SinI GGWCC 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 75, 231, 331
SsiI CCGC 1 cut(s) 272
SspMI CTAG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 4 cut(s) 203, 213, 354, 360
TaqII GACCGA 1 cut(s) 180
TasI AATT 3 cut(s) 75, 231, 331
Tru1I TTAA 2 cut(s) 128, 146
Tru9I TTAA 2 cut(s) 128, 146
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 2 cut(s) 28, 408
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.