Rh7CG453300

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000946
Physical Location & Seq
Forward (+)
59648177 .. 59649240
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG453300.1

Sequence Viewer

Length: 657 bp
ATGACACCACAACCCCTACCAGAACAGACTCCTCCTCCATCCTACTCCTCACCACCACCCACAAAACCTAATGCACCAGCACTTCTTGCTGTGATCTTCAACCTCTTCGACGACTTCATCAACAACTTCGTCGACCCGCCGGTCCGGTCTTCAGTCGACCCCAAACACGCACTCTCCACCGCCCTTAGTGAGATCAGTTATGGTCGGAAGAGAGCCTCGACATCTCCACCGCCTTCCCCAAATCGTCAACACGACGGCCCTCGAGGACCGCATCGATCTCTAGCAACGCGAGATCTAGTTGTATCCTGCCAAATCAAATCTGAGAGGAACGCCGAAGTCCACGAGGTCCACGATAGGTCGTTGAAGCTGGACGACGAGCTCTGCGACGTAGACGCCATGAAAGTTGAGTTGACTCTGGTCCGGAATGACATCGAGGACTTGAGCAAGTCGCGGATGGAGCTCGTGACCAAGTTGAAGACGATCCAAAGAGAGAATGAGAGGGCTCGGTCCGACGAGTCGAAGCAAATCAAAGCCATTAGAGACGAAATTGAGACTTTGAAGTTGGAGATTAAGAAAGGAAGCATTTTGTGGAGTAGAGGCTGTTCAAAGGAGGATGGCGATGGTGGAGCAGAGGCCGAACGACGTCTTAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.34

Weight (kDa)

6.24

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 646
AbsI CCTCGAGG 1 cut(s) 261
AccI GTMKAC 3 cut(s) 132, 156, 390
AccII CGCG 2 cut(s) 289, 451
AccIII TCCGGA 1 cut(s) 420
AciI CCGC 5 cut(s) 137, 180, 230, 269, 451
AclWI GGATC 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 135
AcyI GRCGYC 2 cut(s) 393, 643
AgsI TTSAA 5 cut(s) 100, 364, 475, 559, 606
AluBI AGCT 3 cut(s) 367, 379, 460
AluI AGCT 3 cut(s) 367, 379, 460
Alw21I GWGCWC 2 cut(s) 381, 462
Alw26I GTCTC 2 cut(s) 534, 545
AlwI GGATC 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 420
AoxI GGCC 2 cut(s) 256, 633
AspS9I GGNCC 6 cut(s) 142, 257, 266, 346, 418, 507
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 5 cut(s) 142, 266, 346, 418, 507
BanII GRGCYC 3 cut(s) 381, 462, 505
BauI CACGAG 2 cut(s) 341, 461
BbsI GAAGAC 2 cut(s) 141, 482
Bbv12I GWGCWC 2 cut(s) 381, 462
BccI CCATC 4 cut(s) 46, 448, 608, 614
BceAI ACGGC 1 cut(s) 271
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 534, 545
BfaI CTAG 2 cut(s) 281, 296
BfuI GTATCC 1 cut(s) 313
BglII AGATCT 1 cut(s) 292
Bme18I GGWCC 5 cut(s) 142, 266, 346, 418, 507
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 6 cut(s) 142, 257, 266, 346, 418, 507
BmsI GCATC 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 141, 482
BpuEI CTTGAG 1 cut(s) 460
Bsa29I ATCGAT 1 cut(s) 274
BsaHI GRCGYC 2 cut(s) 393, 643
BsaWI WCCGGW 2 cut(s) 144, 420
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 158, 188
Bse118I RCCGGY 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 274
BseGI GGATG 3 cut(s) 38, 459, 619
BseMII CTCAG 1 cut(s) 312
BseRI GAGGAG 3 cut(s) 21, 24, 37
Bsh1236I CGCG 2 cut(s) 289, 451
BshFI GGCC 2 cut(s) 258, 635
BshVI ATCGAT 1 cut(s) 274
BsiHKAI GWGCWC 2 cut(s) 381, 462
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 3 cut(s) 140, 145, 421
BsmAI GTCTC 2 cut(s) 534, 545
BsmBI CGTCTC 1 cut(s) 534
BsnI GGCC 2 cut(s) 258, 635
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 381, 462, 505
Bsp13I TCCGGA 1 cut(s) 420
Bsp143I GATC 5 cut(s) 93, 192, 275, 292, 480
BspACI CCGC 5 cut(s) 137, 180, 230, 269, 451
BspANI GGCC 2 cut(s) 258, 635
BspCNI CTCAG 1 cut(s) 313
BspDI ATCGAT 1 cut(s) 274
BspEI TCCGGA 1 cut(s) 420
BspFNI CGCG 2 cut(s) 289, 451
BspPI GGATC 1 cut(s) 475
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssMI GATC 5 cut(s) 93, 192, 275, 292, 480
BssNI GRCGYC 2 cut(s) 393, 643
BssSI CACGAG 2 cut(s) 341, 461
Bst2BI CACGAG 2 cut(s) 341, 461
Bst6I CTCTTC 2 cut(s) 110, 203
BstACI GRCGYC 2 cut(s) 393, 643
BstAPI GCANNNNNTGC 1 cut(s) 86
BstDEI CTNAG 3 cut(s) 185, 321, 647
BstF5I GGATG 3 cut(s) 38, 459, 619
BstFNI CGCG 2 cut(s) 289, 451
BstKTI GATC 5 cut(s) 96, 195, 278, 295, 483
BstMAI GTCTC 2 cut(s) 534, 545
BstMBI GATC 5 cut(s) 93, 192, 275, 292, 480
BstMWI GCNNNNNNNGC 2 cut(s) 86, 457
BstPAI GACNNNNGTC 1 cut(s) 416
BstUI CGCG 2 cut(s) 289, 451
BstV2I GAAGAC 2 cut(s) 141, 482
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 274
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 258, 635
BsuTUI ATCGAT 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 633
BtsCI GGATG 3 cut(s) 38, 459, 619
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 6 cut(s) 142, 257, 266, 346, 418, 507
ClaI ATCGAT 1 cut(s) 274
CpoI CGGWCCG 2 cut(s) 142, 507
CseI GACGC 1 cut(s) 401
CspI CGGWCCG 2 cut(s) 142, 507
CviAII CATG 1 cut(s) 397
DdeI CTNAG 3 cut(s) 185, 321, 647
DpnI GATC 5 cut(s) 95, 194, 277, 294, 482
DpnII GATC 5 cut(s) 93, 192, 275, 292, 480
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 2 cut(s) 110, 203
EarI CTCTTC 2 cut(s) 110, 203
Ecl136II GAGCTC 2 cut(s) 379, 460
Eco24I GRGCYC 3 cut(s) 381, 462, 505
Eco47I GGWCC 5 cut(s) 142, 266, 346, 418, 507
Eco53kI GAGCTC 2 cut(s) 379, 460
Eco57I CTGAAG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 2 cut(s) 379, 460
EcoT38I GRGCYC 3 cut(s) 381, 462, 505
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 1 cut(s) 400
FaiI YATR 2 cut(s) 201, 398
FatI CATG 1 cut(s) 396
FauI CCCGC 1 cut(s) 144
FblI GTMKAC 3 cut(s) 132, 156, 390
FokI GGATG 3 cut(s) 25, 466, 626
FriOI GRGCYC 3 cut(s) 381, 462, 505
FspBI CTAG 2 cut(s) 281, 296
HaeIII GGCC 2 cut(s) 258, 635
HapII CCGG 3 cut(s) 140, 145, 421
HgaI GACGC 1 cut(s) 401
Hin1I GRCGYC 2 cut(s) 393, 643
Hin1II CATG 1 cut(s) 400
HincII GTYRAC 4 cut(s) 133, 157, 248, 411
HindII GTYRAC 4 cut(s) 133, 157, 248, 411
HinfI GANTC 3 cut(s) 28, 412, 515
HpaII CCGG 3 cut(s) 140, 145, 421
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 7 cut(s) 133, 157, 248, 340, 349, 391, 411
Hpy188I TCNGA 3 cut(s) 207, 322, 511
Hpy188III TCNNGA 2 cut(s) 421, 463
Hpy8I GTNNAC 7 cut(s) 133, 157, 248, 340, 349, 391, 411
Hpy99I CGWCG 7 cut(s) 113, 134, 257, 377, 389, 515, 645
HpyAV CCTTC 1 cut(s) 243
HpyCH4IV ACGT 2 cut(s) 387, 643
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 457
HpyF3I CTNAG 3 cut(s) 185, 321, 647
HpySE526I ACGT 2 cut(s) 387, 643
Hsp92I GRCGYC 2 cut(s) 393, 643
Hsp92II CATG 1 cut(s) 400
Kpn2I TCCGGA 1 cut(s) 420
Kzo9I GATC 5 cut(s) 93, 192, 275, 292, 480
LmnI GCTCC 2 cut(s) 457, 626
LpnPI CCDG 8 cut(s) 33, 90, 153, 158, 319, 353, 401, 434
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 281, 296
MaeII ACGT 2 cut(s) 387, 643
MaeIII GTNAC 1 cut(s) 463
MalI GATC 5 cut(s) 95, 194, 277, 294, 482
MboI GATC 5 cut(s) 93, 192, 275, 292, 480
MboII GAAGA 5 cut(s) 88, 97, 141, 220, 487
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 3 cut(s) 381, 462, 505
MluCI AATT 1 cut(s) 546
MlyI GAGTC 3 cut(s) 22, 406, 524
MmeI TCCRAC 3 cut(s) 185, 534, 543
MroI TCCGGA 1 cut(s) 420
MseI TTAA 2 cut(s) 570, 655
MspI CCGG 3 cut(s) 140, 145, 421
MvnI CGCG 2 cut(s) 289, 451
MwoI GCNNNNNNNGC 2 cut(s) 86, 457
NdeII GATC 5 cut(s) 93, 192, 275, 292, 480
NlaIII CATG 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 348, 381
PleI GAGTC 3 cut(s) 22, 406, 523
PpsI GAGTC 3 cut(s) 22, 406, 523
PshAI GACNNNNGTC 1 cut(s) 416
Psp124BI GAGCTC 2 cut(s) 381, 462
PspPI GGNCC 6 cut(s) 142, 257, 266, 346, 418, 507
PspXI VCTCGAGB 1 cut(s) 261
PsrI GAACNNNNNNTAC 2 cut(s) 586, 618
PsuI RGATCY 1 cut(s) 292
Rsr2I CGGWCCG 2 cut(s) 142, 507
RsrII CGGWCCG 2 cut(s) 142, 507
SacI GAGCTC 2 cut(s) 381, 462
SalI GTCGAC 2 cut(s) 131, 155
SaqAI TTAA 2 cut(s) 570, 655
Sau3AI GATC 5 cut(s) 93, 192, 275, 292, 480
Sau96I GGNCC 6 cut(s) 142, 257, 266, 346, 418, 507
SchI GAGTC 3 cut(s) 22, 406, 524
SduI GDGCHC 3 cut(s) 381, 462, 505
SetI ASST 9 cut(s) 70, 105, 348, 359, 369, 381, 390, 462, 646
SfaNI GCATC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 5 cut(s) 142, 266, 346, 418, 507
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 261, 439
SmoI CTYRAG 2 cut(s) 261, 439
Sse9I AATT 1 cut(s) 546
SsiI CCGC 5 cut(s) 137, 180, 230, 269, 451
SspMI CTAG 2 cut(s) 281, 296
SstI GAGCTC 2 cut(s) 381, 462
TaiI ACGT 2 cut(s) 390, 646
TaqI TCGA 8 cut(s) 108, 132, 156, 218, 262, 274, 432, 518
TaqII GACCGA 1 cut(s) 495
TasI AATT 1 cut(s) 546
Tru1I TTAA 2 cut(s) 570, 655
Tru9I TTAA 2 cut(s) 570, 655
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 106, 413
VpaK11BI GGWCC 5 cut(s) 142, 266, 346, 418, 507
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 3 cut(s) 132, 156, 390
XspI CTAG 2 cut(s) 281, 296
ZraI GACGTC 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.