Rh1AG198000

carotenoid cleavage dioxygenase 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000946
Physical Location & Seq
Reverse (-)
37627766 .. 37628140
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG198000.1

Sequence Viewer

Length: 375 bp
ATGACACCACAACCCCTACCAGAACATAATCCTCCTCCATCCTACTCCTCACCACCACCCACAAAACCTAATGCACCAGCATTTCCTGCTGTGATCTTCAACCTCTTCGACGACTTCATCAATAACTTCGTCGACCCGCCGGTCCGGTCTTCAGTCGACCCCAAACACGCACTCTCCACCGCCCTCAGTGAGATCAGTTATGGCCGGAAGAGAGCCTCAGCATCTCCACCGCCTTCCCCAAATCGTCAACACGACGGCCCTCGAGGACCGCATCGATCTCTAGCAACGCGAGATCCAATCCCTCCTCGGGGACAATCAACTCCTCGCGGCCACCCACGTGGCGCTCAAGCAGGACCTAACCACCGCTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
RPE65

Protein Analysis

124

Amino Acids

13.4

Weight (kDa)

10.45

Isoelectric Point (pI)

66.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AbsI CCTCGAGG 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 2 cut(s) 132, 156
AccII CGCG 2 cut(s) 289, 327
AciI CCGC 6 cut(s) 137, 180, 230, 269, 327, 364
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 2 cut(s) 202, 328
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 307, 308
AgsI TTSAA 1 cut(s) 100
AleI CACNNNNGTG 1 cut(s) 336
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 2 cut(s) 261, 306
AoxI GGCC 3 cut(s) 202, 256, 328
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 4 cut(s) 142, 257, 266, 353
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 2 cut(s) 261, 306
AvaII GGWCC 3 cut(s) 142, 266, 353
BbrPI CACGTG 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 271
BfaI CTAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 345
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme18I GGWCC 3 cut(s) 142, 266, 353
BmeT110I CYCGRG 2 cut(s) 261, 306
BmgT120I GGNCC 4 cut(s) 142, 257, 266, 353
BmsI GCATC 2 cut(s) 230, 280
BpiI GAAGAC 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 330
Bsa29I ATCGAT 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 308
Bse118I RCCGGY 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 307, 308
BseMII CTCAG 2 cut(s) 199, 231
BseRI GAGGAG 4 cut(s) 24, 37, 294, 312
Bsh1236I CGCG 2 cut(s) 289, 327
BshFI GGCC 3 cut(s) 204, 258, 330
BshVI ATCGAT 1 cut(s) 274
BsiHKCI CYCGRG 2 cut(s) 261, 306
BsiSI CCGG 3 cut(s) 140, 145, 205
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 307, 308
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 3 cut(s) 204, 258, 330
BsoBI CYCGRG 2 cut(s) 261, 306
Bsp143I GATC 4 cut(s) 93, 192, 275, 292
BspACI CCGC 6 cut(s) 137, 180, 230, 269, 327, 364
BspANI GGCC 3 cut(s) 204, 258, 330
BspCNI CTCAG 2 cut(s) 198, 230
BspDI ATCGAT 1 cut(s) 274
BspFNI CGCG 2 cut(s) 289, 327
BspPI GGATC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 4 cut(s) 93, 192, 275, 292
Bst6I CTCTTC 2 cut(s) 110, 203
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 338
BstDEI CTNAG 3 cut(s) 185, 217, 367
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 2 cut(s) 289, 327
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 4 cut(s) 96, 195, 278, 295
BstMBI GATC 4 cut(s) 93, 192, 275, 292
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstUI CGCG 2 cut(s) 289, 327
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 274
BsuRI GGCC 3 cut(s) 204, 258, 330
BsuTUI ATCGAT 1 cut(s) 274
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 4 cut(s) 142, 257, 266, 353
ClaI ATCGAT 1 cut(s) 274
CpoI CGGWCCG 1 cut(s) 142
CspI CGGWCCG 1 cut(s) 142
CviJI RGCY 4 cut(s) 204, 215, 258, 330
CviKI_1 RGCY 4 cut(s) 204, 215, 258, 330
DdeI CTNAG 3 cut(s) 185, 217, 367
DpnI GATC 4 cut(s) 95, 194, 277, 294
DpnII GATC 4 cut(s) 93, 192, 275, 292
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 2 cut(s) 202, 328
Eam1104I CTCTTC 2 cut(s) 110, 203
EarI CTCTTC 2 cut(s) 110, 203
Eco47I GGWCC 3 cut(s) 142, 266, 353
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 338
Eco88I CYCGRG 2 cut(s) 261, 306
EcoO109I RGGNCCY 1 cut(s) 353
FaiI YATR 2 cut(s) 27, 201
FaqI GGGAC 1 cut(s) 324
FauI CCCGC 1 cut(s) 144
FblI GTMKAC 2 cut(s) 132, 156
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 328
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 3 cut(s) 204, 258, 330
HapII CCGG 3 cut(s) 140, 145, 205
HhaI GCGC 1 cut(s) 344
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 3 cut(s) 133, 157, 248
HindII GTYRAC 3 cut(s) 133, 157, 248
HpaII CCGG 3 cut(s) 140, 145, 205
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 3 cut(s) 133, 157, 248
Hpy188I TCNGA 1 cut(s) 370
Hpy8I GTNNAC 3 cut(s) 133, 157, 248
Hpy99I CGWCG 3 cut(s) 113, 134, 257
HpyAV CCTTC 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 185, 217, 367
HpySE526I ACGT 1 cut(s) 337
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 4 cut(s) 93, 192, 275, 292
LpnPI CCDG 7 cut(s) 33, 90, 99, 153, 158, 218, 336
LweI GCATC 2 cut(s) 230, 280
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 337
MalI GATC 4 cut(s) 95, 194, 277, 294
MbiI CCGCTC 1 cut(s) 366
MboI GATC 4 cut(s) 93, 192, 275, 292
MboII GAAGA 4 cut(s) 88, 97, 141, 220
MflI RGATCY 1 cut(s) 292
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 3 cut(s) 140, 145, 205
MvnI CGCG 2 cut(s) 289, 327
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 4 cut(s) 93, 192, 275, 292
OliI CACNNNNGTG 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 261
PkrI GCNGC 1 cut(s) 329
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 338
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
PspCI CACGTG 1 cut(s) 338
PspPI GGNCC 4 cut(s) 142, 257, 266, 353
PspPPI RGGWCCY 1 cut(s) 353
PspXI VCTCGAGB 1 cut(s) 261
PsuI RGATCY 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 336
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
SalI GTCGAC 2 cut(s) 131, 155
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 4 cut(s) 93, 192, 275, 292
Sau96I GGNCC 4 cut(s) 142, 257, 266, 353
SetI ASST 4 cut(s) 70, 105, 340, 358
SfaNI GCATC 2 cut(s) 230, 280
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 3 cut(s) 142, 266, 353
SlaI CTCGAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 261, 345
SmoI CTYRAG 2 cut(s) 261, 345
SsiI CCGC 6 cut(s) 137, 180, 230, 269, 327, 364
SspMI CTAG 1 cut(s) 281
TaiI ACGT 1 cut(s) 340
TaqI TCGA 5 cut(s) 108, 132, 156, 262, 274
TauI GCSGC 1 cut(s) 330
TscAI CASTG 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 106
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 3 cut(s) 142, 266, 353
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 2 cut(s) 132, 156
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.