Rh5AG140900

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000946
Physical Location & Seq
Forward (+)
14613787 .. 14613975
189 bp
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UTR
Exon/CDS
Intron
Rh5AG140900.1

Sequence Viewer

Length: 189 bp
ATGAACGCCGAGTTGACTTTGGTACTGAACGACATCGAGGATTTGAGCACGTCGTGGATGGAGCTCGCGATCGAGTTGAAGACGATCCAAGGAGAGATTGAGAGGGCTTGCTCCGACGAGTCGAAGCAAATCCAAGCCATTAGAGACGAAATTGAGACTTTGAAGCTGGAGATTGAGAAAGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.1

Weight (kDa)

4.3

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 68
AclWI GGATC 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 54
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 2 cut(s) 79, 163
AjiI CACGTC 1 cut(s) 51
AluBI AGCT 2 cut(s) 64, 166
AluI AGCT 2 cut(s) 64, 166
Alw21I GWGCWC 2 cut(s) 50, 66
Alw26I GTCTC 2 cut(s) 138, 149
AlwI GGATC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 50, 66
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 138, 149
BmgBI CACGTC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 50, 66
BsmAI GTCTC 2 cut(s) 138, 149
BsmBI CGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 50, 66
Bsp143I GATC 2 cut(s) 69, 84
Bsp68I TCGCGA 1 cut(s) 68
BspFNI CGCG 1 cut(s) 68
BspPI GGATC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 69, 84
BssT1I CCWWGG 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 66, 109
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 2 cut(s) 72, 87
BstMAI GTCTC 2 cut(s) 138, 149
BstMBI GATC 2 cut(s) 69, 84
BstMCI CGRYCG 1 cut(s) 72
BstUI CGCG 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 66, 109
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 4 cut(s) 64, 107, 137, 166
CviKI_1 RGCY 4 cut(s) 64, 107, 137, 166
CviQI GTAC 1 cut(s) 23
DpnI GATC 2 cut(s) 71, 86
DpnII GATC 2 cut(s) 69, 84
DraIII CACNNNGTG 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 138
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 188
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 2 cut(s) 55, 119
HpyAV CCTTC 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 50
Kzo9I GATC 2 cut(s) 69, 84
LmnI GCTCC 2 cut(s) 61, 116
LpnPI CCDG 1 cut(s) 152
MaeII ACGT 1 cut(s) 50
MalI GATC 2 cut(s) 71, 86
MboI GATC 2 cut(s) 69, 84
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 50, 66
MluCI AATT 1 cut(s) 150
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 2 cut(s) 31, 96
MvnI CGCG 1 cut(s) 68
NdeII GATC 2 cut(s) 69, 84
NmeAIII GCCGAG 1 cut(s) 34
NruI TCGCGA 1 cut(s) 68
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 66
PvuI CGATCG 1 cut(s) 72
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SacI GAGCTC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 69, 84
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 2 cut(s) 50, 66
SetI ASST 4 cut(s) 53, 66, 168, 188
Sse9I AATT 1 cut(s) 150
SstI GAGCTC 1 cut(s) 66
StyI CCWWGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 53
TaqI TCGA 3 cut(s) 36, 72, 122
TasI AATT 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.