Rh2CG126000
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003345
Physical Location & Seq
Reverse (-)
11248973 .. 11254226
5254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG126000.1

Sequence Viewer

Length: 1314 bp
ATGTCGCTGCGAGTGCTGAACCCTAATGCGGAGGTGCTGAACAAATCGGCGGCGCTGCACATGAACATCAACGCCGCCAAGGGGTTGCAGGATGTGCTCAAAACCAACCTCGGCCCCAAAGGCACCATCAAAATGCTCGTCGGTGGCTCTGGAGACATCAAGCTCACTAAAGACGGCAACACTCTCCTCAAAGAAATGCAGATTCAAAACCCCACAGCGATTATGATTGCCAGGACTGCAGTTGCCCAGGATGACATCAGCGGCGATGGCACCACCTCTACTGTTCTTTTCATCGGCGAGCTCATGAAACAATCCGAACGATACATCGATGAAGGGATGCATCCACGTGTTCTGGTTGATGGTTTTGAGATTGCCAAAAGAGCAACACTTCAATTTATCGAGAAATTTAAAACTCCTGTTGTAATGGGGAGTGAGCCTGACAAAGAAATCCTGAAAATGGTAGCAAGGACAACTGTGCGAACAAAGTTACATGAAGAATTAGCTGATCAATTGACTGACATAGTTGTAAATGCGGTTCTTTGCATCCGCAAACCTGAGGAGGCAATTGATCTATTTATGGTGGAGATTATGCACATGCGCCATAAATTTGATGCAGACACACGCTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCCAATGTATCTCTGGAGTATGAGAAAAGTGAAGTGAACGCTGGATTTTTCTATTCAAATGCGGAGCAGAGAGAAGCAATGGTTTTAGCTGAAAGACATCAGGTTGACGAGAGAGTTAGAAAGATTATTGAGCTGAAAAATAAGGTTTGTTCTGGTAATGACAATAATTTTGTTGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCAGGGATTATTGCTCTGAGAAGAGCGAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCTTTGAACTCTGTAGATGATTTAACTCCGGATTGCCTTGGCTGGGCTGGACTTGTATACGAGCATGTCCTTGGTGAAGAGAAGTATACATTTGTCGAAAATGTGAAGAACCCTCATTCCTGCACAATCTTAATCAAAGGGCCTAATGACCATACAATTGCCCAGATTAAGGATGCTGTTCGTGATGGTCTGAGGGCAGTAAAAAATACAATAGAAGATGAAGCTGTAATCTTTGTACGTTTTGTTGAATTAGAAAATCGTAGGATATTGCGATCATATTCTTTTCTTTTTCCTTTTTCTGTTGAATCATAA

Protein Analysis

437

Amino Acids

48.99

Weight (kDa)

6.3

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 29 - 411 9.8e-128 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 122, 269
AccI GTMKAC 2 cut(s) 1059, 1088
AccIII TCCGGA 1 cut(s) 1030
AciI CCGC 7 cut(s) 29, 50, 75, 261, 533, 547, 767
AclWI GGATC 1 cut(s) 896
AcsI RAATTY 2 cut(s) 404, 605
AcvI CACGTG 1 cut(s) 347
AfaI GTAC 1 cut(s) 1239
AfiI CCNNNNNNNGG 6 cut(s) 28, 81, 457, 913, 1045, 1171
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 6 cut(s) 206, 392, 762, 1009, 1250, 1307
AjnI CCWGG 2 cut(s) 230, 246
AloI GAACNNNNNNTCC 2 cut(s) 1103, 1135
AluBI AGCT 6 cut(s) 163, 301, 503, 794, 838, 1226
AluI AGCT 6 cut(s) 163, 301, 503, 794, 838, 1226
Alw21I GWGCWC 2 cut(s) 99, 303
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 896
Aor13HI TCCGGA 1 cut(s) 1030
AoxI GGCC 2 cut(s) 112, 1142
ApeKI GCWGC 2 cut(s) 7, 55
ApoI RAATTY 2 cut(s) 404, 605
ArsI GACNNNNNNTTYG 4 cut(s) 123, 155, 857, 889
AspLEI GCGC 2 cut(s) 55, 600
AspS9I GGNCC 3 cut(s) 113, 916, 1142
AsuHPI GGTGA 1 cut(s) 1088
AvaII GGWCC 1 cut(s) 916
AxyI CCTNAGG 1 cut(s) 555
BanI GGYRCC 2 cut(s) 122, 269
BanII GRGCYC 1 cut(s) 303
BbrPI CACGTG 1 cut(s) 347
Bbv12I GWGCWC 2 cut(s) 99, 303
BbvI GCAGC 1 cut(s) 42
BccI CCATC 5 cut(s) 134, 260, 353, 916, 1181
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 2 cut(s) 232, 248
BclI TGATCA 2 cut(s) 505, 646
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 2 cut(s) 237, 1014
BfoI RGCGCY 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 120
BisI GCNGC 5 cut(s) 8, 51, 56, 75, 262
BlsI GCNGC 5 cut(s) 9, 52, 57, 76, 263
Bme1390I CCNGG 2 cut(s) 232, 248
Bme18I GGWCC 1 cut(s) 916
BmgT120I GGNCC 3 cut(s) 113, 916, 1142
BmiI GGNNCC 3 cut(s) 115, 124, 271
BmrFI CCNGG 2 cut(s) 232, 248
BmsI GCATC 6 cut(s) 327, 349, 552, 601, 670, 1165
BpmI CTGGAG 2 cut(s) 171, 740
Bsa29I ATCGAT 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 347
BsaJI CCNNGG 5 cut(s) 78, 109, 246, 1039, 1072
BsaWI WCCGGW 1 cut(s) 1030
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 81, 457, 913, 1045, 1171
Bse21I CCTNAGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 789
BseAI TCCGGA 1 cut(s) 1030
BseBI CCWGG 2 cut(s) 232, 248
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 5 cut(s) 78, 109, 246, 1039, 1072
BseGI GGATG 7 cut(s) 97, 256, 340, 342, 543, 661, 1180
BseLI CCNNNNNNNGG 6 cut(s) 28, 81, 457, 913, 1045, 1171
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 3 cut(s) 546, 938, 1184
BseRI GAGGAG 3 cut(s) 176, 572, 976
BseXI GCAGC 1 cut(s) 42
BseYI CCCAGC 1 cut(s) 1044
BsgI GTGCAG 2 cut(s) 41, 1108
BshFI GGCC 2 cut(s) 114, 1144
BshNI GGYRCC 2 cut(s) 122, 269
BshVI ATCGAT 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 99, 303
BsiSI CCGG 1 cut(s) 1031
BslI CCNNNNNNNGG 6 cut(s) 28, 81, 457, 913, 1045, 1171
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 2 cut(s) 114, 1144
Bsp1286I GDGCHC 2 cut(s) 99, 303
Bsp13I TCCGGA 1 cut(s) 1030
Bsp143I GATC 5 cut(s) 505, 568, 646, 901, 1274
BspACI CCGC 7 cut(s) 29, 50, 75, 261, 533, 547, 767
BspANI GGCC 2 cut(s) 114, 1144
BspCNI CTCAG 3 cut(s) 547, 939, 1185
BspDI ATCGAT 1 cut(s) 327
BspEI TCCGGA 1 cut(s) 1030
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 115, 124, 271
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 896
BspQI GCTCTTC 1 cut(s) 946
BspT107I GGYRCC 2 cut(s) 122, 269
BsrDI GCAATG 1 cut(s) 789
BssECI CCNNGG 5 cut(s) 78, 109, 246, 1039, 1072
BssMI GATC 5 cut(s) 505, 568, 646, 901, 1274
BssNAI GTATAC 2 cut(s) 1060, 1089
BssT1I CCWWGG 3 cut(s) 78, 1039, 1072
Bst1107I GTATAC 2 cut(s) 1060, 1089
Bst2UI CCWGG 2 cut(s) 232, 248
Bst4CI ACNGT 3 cut(s) 283, 475, 978
Bst6I CTCTTC 3 cut(s) 946, 953, 1074
BstAPI GCANNNNNTGC 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 3 cut(s) 555, 947, 1193
BstF5I GGATG 7 cut(s) 97, 256, 340, 342, 543, 661, 1180
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 600
BstKTI GATC 5 cut(s) 508, 571, 649, 904, 1277
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 5 cut(s) 505, 568, 646, 901, 1274
BstMWI GCNNNNNNNGC 6 cut(s) 13, 94, 120, 236, 267, 380
BstNI CCWGG 2 cut(s) 232, 248
BstNSI RCATGY 2 cut(s) 598, 1070
BstSCI CCNGG 2 cut(s) 230, 246
BstSFI CTRYAG 2 cut(s) 237, 1014
BstV1I GCAGC 1 cut(s) 42
BstZ17I GTATAC 2 cut(s) 1060, 1089
Bsu15I ATCGAT 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 555
BsuRI GGCC 2 cut(s) 114, 1144
BsuTUI ATCGAT 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 7 cut(s) 97, 256, 340, 342, 543, 661, 1180
Cac8I GCNNGC 1 cut(s) 299
CciI TCATGA 1 cut(s) 303
CfoI GCGC 2 cut(s) 55, 600
Cfr13I GGNCC 3 cut(s) 113, 916, 1142
ClaI ATCGAT 1 cut(s) 327
Csp6I GTAC 1 cut(s) 1238
CviAII CATG 6 cut(s) 61, 304, 491, 595, 650, 1067
CviQI GTAC 1 cut(s) 1238
DdeI CTNAG 3 cut(s) 555, 947, 1193
DpnI GATC 5 cut(s) 507, 570, 648, 903, 1276
DpnII GATC 5 cut(s) 505, 568, 646, 901, 1274
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 3 cut(s) 946, 953, 1074
EarI CTCTTC 3 cut(s) 946, 953, 1074
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 3 cut(s) 78, 1039, 1072
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 916
Eco53kI GAGCTC 1 cut(s) 301
Eco72I CACGTG 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 1142
EcoRII CCWGG 2 cut(s) 230, 246
EcoT14I CCWWGG 3 cut(s) 78, 1039, 1072
EcoT22I ATGCAT 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 3 cut(s) 78, 1039, 1072
FaeI CATG 6 cut(s) 64, 307, 494, 598, 653, 1070
FatI CATG 6 cut(s) 60, 303, 490, 594, 649, 1066
FbaI TGATCA 2 cut(s) 505, 646
FblI GTMKAC 2 cut(s) 1059, 1088
Fnu4HI GCNGC 5 cut(s) 8, 51, 56, 75, 262
FokI GGATG 7 cut(s) 104, 263, 327, 349, 530, 648, 1187
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 5 cut(s) 8, 51, 56, 75, 262
FspBI CTAG 1 cut(s) 657
GlaI GCGC 2 cut(s) 54, 599
GluI GCNGC 5 cut(s) 8, 51, 56, 75, 262
GsaI CCCAGC 1 cut(s) 1048
GsuI CTGGAG 2 cut(s) 171, 740
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 114, 1144
HapII CCGG 1 cut(s) 1031
HhaI GCGC 2 cut(s) 55, 600
Hin1II CATG 6 cut(s) 64, 307, 494, 598, 653, 1070
Hin6I GCGC 2 cut(s) 53, 598
HinP1I GCGC 2 cut(s) 53, 598
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 2 cut(s) 202, 1307
HpaII CCGG 1 cut(s) 1031
HphI GGTGA 1 cut(s) 1088
Hpy166II GTNNAC 4 cut(s) 742, 811, 1060, 1089
Hpy188I TCNGA 4 cut(s) 316, 891, 948, 1194
Hpy8I GTNNAC 4 cut(s) 742, 811, 1060, 1089
Hpy99I CGWCG 2 cut(s) 143, 681
HpyAV CCTTC 3 cut(s) 326, 886, 929
HpyCH4III ACNGT 3 cut(s) 283, 475, 978
HpyCH4IV ACGT 2 cut(s) 346, 1240
HpyCH4V TGCA 9 cut(s) 58, 88, 199, 239, 340, 543, 592, 614, 1125
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 94, 120, 236, 267, 380
HpyF3I CTNAG 3 cut(s) 555, 947, 1193
HpySE526I ACGT 2 cut(s) 346, 1240
Hsp92II CATG 6 cut(s) 64, 307, 494, 598, 653, 1070
HspAI GCGC 2 cut(s) 53, 598
Kpn2I TCCGGA 1 cut(s) 1030
Ksp22I TGATCA 2 cut(s) 505, 646
Kzo9I GATC 5 cut(s) 505, 568, 646, 901, 1274
LguI GCTCTTC 1 cut(s) 946
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 6 cut(s) 327, 349, 552, 601, 670, 1165
MaeI CTAG 1 cut(s) 657
MaeII ACGT 2 cut(s) 346, 1240
MaeIII GTNAC 2 cut(s) 486, 692
MalI GATC 5 cut(s) 507, 570, 648, 903, 1276
MboI GATC 5 cut(s) 505, 568, 646, 901, 1274
MboII GAAGA 6 cut(s) 506, 963, 970, 1091, 1120, 1229
MfeI CAATTG 3 cut(s) 509, 564, 1158
MhlI GDGCHC 2 cut(s) 99, 303
Mph1103I ATGCAT 1 cut(s) 342
MroI TCCGGA 1 cut(s) 1030
MseI TTAA 4 cut(s) 408, 1025, 1133, 1170
MslI CAYNNNNRTG 2 cut(s) 131, 345
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 1 cut(s) 1031
MspR9I CCNGG 2 cut(s) 232, 248
MunI CAATTG 3 cut(s) 509, 564, 1158
MvaI CCWGG 2 cut(s) 232, 248
MwoI GCNNNNNNNGC 6 cut(s) 13, 94, 120, 236, 267, 380
NdeII GATC 5 cut(s) 505, 568, 646, 901, 1274
NlaIII CATG 6 cut(s) 64, 307, 494, 598, 653, 1070
NlaIV GGNNCC 3 cut(s) 115, 124, 271
NmeAIII GCCGAG 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 342
NspI RCATGY 2 cut(s) 598, 1070
PagI TCATGA 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 946
PfeI GAWTC 2 cut(s) 202, 1307
PkrI GCNGC 5 cut(s) 9, 52, 57, 76, 263
PmaCI CACGTG 1 cut(s) 347
PmlI CACGTG 1 cut(s) 347
Ppu21I YACGTR 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 230, 246
PspCI CACGTG 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 1044
PspGI CCWGG 2 cut(s) 230, 246
PspN4I GGNNCC 3 cut(s) 115, 124, 271
PspPI GGNCC 3 cut(s) 113, 916, 1142
PsrI GAACNNNNNNTAC 2 cut(s) 519, 551
PstI CTGCAG 1 cut(s) 241
RsaI GTAC 1 cut(s) 1239
RsaNI GTAC 1 cut(s) 1238
RseI CAYNNNNRTG 2 cut(s) 131, 345
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 946
SaqAI TTAA 4 cut(s) 408, 1025, 1133, 1170
SatI GCNGC 5 cut(s) 8, 51, 56, 75, 262
Sau3AI GATC 5 cut(s) 505, 568, 646, 901, 1274
Sau96I GGNCC 3 cut(s) 113, 916, 1142
ScrFI CCNGG 2 cut(s) 232, 248
SduI GDGCHC 2 cut(s) 99, 303
SfaNI GCATC 6 cut(s) 327, 349, 552, 601, 670, 1165
SfcI CTRYAG 2 cut(s) 237, 1014
SinI GGWCC 1 cut(s) 916
SmiMI CAYNNNNRTG 2 cut(s) 131, 345
SsiI CCGC 7 cut(s) 29, 50, 75, 261, 533, 547, 767
SspMI CTAG 1 cut(s) 657
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 230, 246
StyI CCWWGG 3 cut(s) 78, 1039, 1072
TaaI ACNGT 3 cut(s) 283, 475, 978
TaiI ACGT 2 cut(s) 349, 1243
TaqI TCGA 3 cut(s) 327, 399, 1098
TauI GCSGC 3 cut(s) 53, 77, 264
TfiI GAWTC 2 cut(s) 202, 1307
Tru1I TTAA 4 cut(s) 408, 1025, 1133, 1170
Tru9I TTAA 4 cut(s) 408, 1025, 1133, 1170
TseI GCWGC 2 cut(s) 7, 55
TspDTI ATGAA 7 cut(s) 77, 280, 320, 345, 507, 686, 1236
VpaK11BI GGWCC 1 cut(s) 916
XapI RAATTY 2 cut(s) 404, 605
XceI RCATGY 2 cut(s) 598, 1070
XcmI CCANNNNNNNNNTGG 1 cut(s) 715
XmiI GTMKAC 2 cut(s) 1059, 1088
XspI CTAG 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.