Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003345

Physical Location & Seq

Genomic Coordinates Forward (+)

23339532 .. 23344664

Gene Structure 5133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G238800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGTCTCTACGAGTTTTGAATCCAAATGCGGAGGTGCTGAACAAATCGGCGGCTCTGCACATGAACATCAACGCAGCCAAGGGCTTGCAGGACGTCCTCAAAACCAACCTTGGCCCTAAGGGCACCATCAAAATGCTTGTTGGTGGAGCCGGTGACATCAAGCTCACTAAAGATGGCAACACTTTGCTTAAAGAAATGCAAATTCAAAACCCAACAGCAATTATGATAGCAAGAACAGCTGTTGCCCAAGATGACATAAGCGGAGATGGCACCACGTCTACTGTCTTATTCATTGGCGAGCTTATGAAACAATCAGAGCGATACATTGATGAAGGGATGCATCCACGTGTCCTAGTTGATGGCTTTGAGATTGCCAAAAGAGCAACGCTTCAGTTTATTGAGAAATTTAAAACTCCTGTGGTGATGGGCAATGAGCCTGACAAAGAGATTCTAAAAATGGTAGCTAGGACAACGTTGCGAACAAAGTTATATGAAGCATTGGCGGATCAATTGACTGACATAGTTGTTAATTCAGTTCTTTGCATACGCAAACCTGAAGAATCCATTGATCTGTTCATGGTGGAGATTATGCACATGCGACACAAGTTTGATGTTGACACACGCTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGATGGGCAGAGAATTGTTACATCTTGACAAGCAATGTATCTTTGGAGTACGAGAAAAGTGAAGTAAATTCTGGCTTTTTCTATTCAAATGCGGAACAGAGAGAAGCCATGGTTTTAGCTGAAAGGCGTCAGGTTGATGAAAGAGTTAGAAAAATCATTGAGCTGAAAAATAAGGTTTGTTCTGGTAATGATAATAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTTTGGACCTTCTCGCTAGGGCAGGGATTATTGCCCTGAGAAGAGCAAAGAGGAGGAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCTGTAAACTCAGTAGATGATTTAACTCCTGATTGCCTTGGTTGGGCTGGACTTGTATATGAGCATGTCCTTGGTGAAGAGAAGTATACATTTATTGAAAATGTGAAGAACCCTCATTCTTGCACAATCTTAATCAAAGGGCCTAACGACCATACAATCGCCCAGATTAAGGATGCTGTTCGTGATGGCCTGAGGGCAGTCAAAAATACAATTGAAGATGAAGCTGTCATCTTAGGTGCTGGAGCTTTTGAAGTTGCAGCCAGACAACATTTAGTAAATGAAGTAAAGAAAACTGTTCAAGGGCGAGCTCAACTTGGTGTTGAAGCTTTTGCTGATGCTCTCCTTGTGGTGCCCAAAACACTTGCTGAGAACTCTGGCCTTGACACGCAAGATGTGATAATTGCTCTTACGGGAGAGCATGATCGGGGAAACGTCGTGGGATTAAATCACCACACTGGAGAACCCATTGACCCACAAATGGAGGGTATCTTTGACAACTACTCTGTGAAGCGACAAATTATAAACTCAGGACCCGTAATTGCATCTCAATTGTTGTTGGTTGATGAAGTAATTCGTGCTGGACGCAACATGCGGAAGCCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

536

Amino Acids

59.22

Weight (kDa)

6.07

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02530 AT5G16070
fragaria_vesca	FvH4_1g11210
malus_domestica	MD09G1086000.v1.1 MD17G1104900.v1.1
prunus_persica	Prupe.3G238800_v2.0.a1
pyrus_communis	pycom09g01130 pycom17g07580
rosa_chinensis	RchiOBHm_Chr2g0098621 RchiOBHm_Chr2g0138531 RchiOBHm_Chr4g0407281 RchiOBHm_Chr4g0409191 RchiOBHm_Chr6g0270681
rosa_laevigata	RLG00000013776 RLG00000016815
rosa_multiflora	Rmu_co8186612.1_g000001 Rmu_sc0000474.1_g000003 Rmu_sc0002106.1_g000012 Rmu_sc0002776.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143840 Rroxscaffold_7G00197690
rosa_rugosa	Rorug02G0073800 Rorug06G0055700
rosa_samantha	Rh2AG121400 Rh2BG125000 Rh2CG126000 Rh2DG127100 Rh5BG537700 Rh6AG175000 Rh6AG275700 Rh6CG174300 Rh6DG166700 Rh7CG256600
rosa_wichuraiana	Rw0G004140 Rw0G012590 Rw6G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1523
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	3 cut(s)	122, 269, 1351
AccI	GTMKAC	2 cut(s)	278, 1088
AciI	CCGC	6 cut(s)	29, 50, 261, 503, 767, 1594
AclI	AACGTT	1 cut(s)	473
AclWI	GGATC	2 cut(s)	513, 896
AcsI	RAATTY	3 cut(s)	201, 404, 742
AcuI	CTGAAG	2 cut(s)	374, 576
AcvI	CACGTG	1 cut(s)	347
AcyI	GRCGYC	2 cut(s)	93, 802
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	4 cut(s)	913, 1045, 1171, 1480
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	8 cut(s)	19, 206, 762, 1100, 1217, 1253, 1301, 1325
AjiI	CACGTC	1 cut(s)	276
Alw21I	GWGCWC	1 cut(s)	1312
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	513, 896
AoxI	GGCC	4 cut(s)	112, 1142, 1189, 1378
ApeKI	GCWGC	2 cut(s)	74, 1259
ApoI	RAATTY	3 cut(s)	201, 404, 742
Asp700I	GAANNNNTTC	1 cut(s)	1572
AspS9I	GGNCC	4 cut(s)	113, 916, 1142, 1532
AsuHPI	GGTGA	4 cut(s)	164, 433, 1088, 1442
AvaII	GGWCC	2 cut(s)	916, 1532
AxyI	CCTNAGG	2 cut(s)	117, 1193
BaeGI	GKGCMC	2 cut(s)	125, 1356
BanI	GGYRCC	3 cut(s)	122, 269, 1351
BanII	GRGCYC	1 cut(s)	1312
BbrPI	CACGTG	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	1312
BbvI	GCAGC	2 cut(s)	86, 1271
BccI	CCATC	8 cut(s)	134, 167, 260, 353, 418, 672, 916, 1181
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	4 cut(s)	353, 465, 657, 927
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	51, 75, 1260
BlsI	GCNGC	3 cut(s)	52, 76, 1261
Bme18I	GGWCC	2 cut(s)	916, 1532
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	4 cut(s)	113, 916, 1142, 1532
BmiI	GGNNCC	5 cut(s)	124, 148, 271, 1353, 1534
BmsI	GCATC	6 cut(s)	327, 349, 670, 1165, 1327, 1553
BpmI	CTGGAG	2 cut(s)	1263, 1479
BsaAI	YACGTR	1 cut(s)	347
BsaHI	GRCGYC	2 cut(s)	93, 802
BsaJI	CCNNGG	5 cut(s)	78, 109, 783, 1039, 1072
Bsc4I	CCNNNNNNNGG	4 cut(s)	913, 1045, 1171, 1480
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	1462
Bse21I	CCTNAGG	2 cut(s)	117, 1193
Bse3DI	GCAATG	2 cut(s)	436, 715
BseDI	CCNNGG	5 cut(s)	78, 109, 783, 1039, 1072
BseGI	GGATG	4 cut(s)	340, 342, 661, 1180
BseLI	CCNNNNNNNGG	4 cut(s)	913, 1045, 1171, 1480
BseMI	GCAATG	2 cut(s)	436, 715
BseMII	CTCAG	5 cut(s)	938, 1026, 1184, 1359, 1542
BseNI	ACTGG	1 cut(s)	1462
BseRI	GAGGAG	1 cut(s)	976
BseSI	GKGCMC	2 cut(s)	125, 1356
BseXI	GCAGC	2 cut(s)	86, 1271
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	114, 1144, 1191, 1380
BshNI	GGYRCC	3 cut(s)	122, 269, 1351
BsiHKAI	GWGCWC	1 cut(s)	1312
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	4 cut(s)	913, 1045, 1171, 1480
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	114, 1144, 1191, 1380
Bsp1286I	GDGCHC	3 cut(s)	125, 1312, 1356
Bsp143I	GATC	5 cut(s)	505, 568, 646, 901, 1423
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	6 cut(s)	29, 50, 261, 503, 767, 1594
BspANI	GGCC	4 cut(s)	114, 1144, 1191, 1380
BspCNI	CTCAG	5 cut(s)	939, 1025, 1185, 1360, 1541
BspLI	GGNNCC	5 cut(s)	124, 148, 271, 1353, 1534
BspPI	GGATC	2 cut(s)	513, 896
BspQI	GCTCTTC	1 cut(s)	946
BspT107I	GGYRCC	3 cut(s)	122, 269, 1351
BsrDI	GCAATG	2 cut(s)	436, 715
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	1462
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	78, 109, 783, 1039, 1072
BssMI	GATC	5 cut(s)	505, 568, 646, 901, 1423
BssNAI	GTATAC	1 cut(s)	1089
BssNI	GRCGYC	2 cut(s)	93, 802
BssT1I	CCWWGG	5 cut(s)	78, 109, 783, 1039, 1072
Bst1107I	GTATAC	1 cut(s)	1089
Bst4CI	ACNGT	3 cut(s)	283, 978, 1297
Bst6I	CTCTTC	2 cut(s)	946, 1074
BstACI	GRCGYC	2 cut(s)	93, 802
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	86, 299, 1308
BstDEI	CTNAG	8 cut(s)	117, 947, 1012, 1193, 1234, 1368, 1528, 1605
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	4 cut(s)	340, 342, 661, 1180
BstKTI	GATC	5 cut(s)	508, 571, 649, 904, 1426
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	505, 568, 646, 901, 1423
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 236, 267, 380
BstNSI	RCATGY	3 cut(s)	598, 1070, 1594
BstSLI	GKGCMC	2 cut(s)	125, 1356
BstV1I	GCAGC	2 cut(s)	86, 1271
BstZ17I	GTATAC	1 cut(s)	1089
Bsu36I	CCTNAGG	2 cut(s)	117, 1193
BsuRI	GGCC	4 cut(s)	114, 1144, 1191, 1380
BtgI	CCRYGG	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	691
BtrI	CACGTC	1 cut(s)	276
BtsCI	GGATG	4 cut(s)	340, 342, 661, 1180
BtsIMutI	CAGTG	1 cut(s)	1455
Cac8I	GCNNGC	3 cut(s)	86, 299, 1308
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	113, 916, 1142, 1532
CseI	GACGC	2 cut(s)	791, 1593
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	8 cut(s)	61, 577, 595, 650, 784, 1067, 1421, 1591
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	8 cut(s)	117, 947, 1012, 1193, 1234, 1368, 1528, 1605
DpnI	GATC	5 cut(s)	507, 570, 648, 903, 1425
DpnII	GATC	5 cut(s)	505, 568, 646, 901, 1423
DraI	TTTAAA	1 cut(s)	409
Eam1104I	CTCTTC	2 cut(s)	946, 1074
EarI	CTCTTC	2 cut(s)	946, 1074
EciI	GGCGGA	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	1310
Eco130I	CCWWGG	5 cut(s)	78, 109, 783, 1039, 1072
Eco24I	GRGCYC	1 cut(s)	1312
Eco47I	GGWCC	2 cut(s)	916, 1532
Eco53kI	GAGCTC	1 cut(s)	1310
Eco57I	CTGAAG	2 cut(s)	374, 576
Eco72I	CACGTG	1 cut(s)	347
Eco81I	CCTNAGG	2 cut(s)	117, 1193
EcoICRI	GAGCTC	1 cut(s)	1310
EcoO109I	RGGNCCY	2 cut(s)	1142, 1532
EcoT14I	CCWWGG	5 cut(s)	78, 109, 783, 1039, 1072
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	1312
ErhI	CCWWGG	5 cut(s)	78, 109, 783, 1039, 1072
FaeI	CATG	8 cut(s)	64, 580, 598, 653, 787, 1070, 1424, 1594
FatI	CATG	8 cut(s)	60, 576, 594, 649, 783, 1066, 1420, 1590
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	2 cut(s)	278, 1088
Fnu4HI	GCNGC	3 cut(s)	51, 75, 1260
FokI	GGATG	4 cut(s)	327, 349, 648, 1187
FriOI	GRGCYC	1 cut(s)	1312
Fsp4HI	GCNGC	3 cut(s)	51, 75, 1260
FspBI	CTAG	4 cut(s)	353, 465, 657, 927
GluI	GCNGC	3 cut(s)	51, 75, 1260
GsuI	CTGGAG	2 cut(s)	1263, 1479
HaeIII	GGCC	4 cut(s)	114, 1144, 1191, 1380
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	2 cut(s)	791, 1593
Hin1I	GRCGYC	2 cut(s)	93, 802
Hin1II	CATG	8 cut(s)	64, 580, 598, 653, 787, 1070, 1424, 1594
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	1326
HinfI	GANTC	3 cut(s)	19, 448, 560
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	4 cut(s)	164, 433, 1088, 1442
Hpy166II	GTNNAC	4 cut(s)	279, 616, 1009, 1089
Hpy188I	TCNGA	2 cut(s)	316, 891
Hpy188III	TCNNGA	5 cut(s)	665, 700, 1031, 1184, 1530
Hpy8I	GTNNAC	4 cut(s)	279, 616, 1009, 1089
Hpy99I	CGWCG	1 cut(s)	1439
HpyAV	CCTTC	3 cut(s)	326, 886, 929
HpyCH4III	ACNGT	3 cut(s)	283, 978, 1297
HpyCH4IV	ACGT	5 cut(s)	93, 275, 346, 473, 1434
HpyCH4V	TGCA	9 cut(s)	58, 88, 199, 340, 543, 592, 1125, 1259, 1544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 236, 267, 380
HpyF3I	CTNAG	8 cut(s)	117, 947, 1012, 1193, 1234, 1368, 1528, 1605
HpySE526I	ACGT	5 cut(s)	93, 275, 346, 473, 1434
Hsp92I	GRCGYC	2 cut(s)	93, 802
Hsp92II	CATG	8 cut(s)	64, 580, 598, 653, 787, 1070, 1424, 1594
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	5 cut(s)	505, 568, 646, 901, 1423
LguI	GCTCTTC	1 cut(s)	946
LmnI	GCTCC	2 cut(s)	146, 1244
Lsp1109I	GCAGC	2 cut(s)	86, 1271
LweI	GCATC	6 cut(s)	327, 349, 670, 1165, 1327, 1553
MaeI	CTAG	4 cut(s)	353, 465, 657, 927
MaeII	ACGT	5 cut(s)	93, 275, 346, 473, 1434
MaeIII	GTNAC	2 cut(s)	152, 692
MalI	GATC	5 cut(s)	507, 570, 648, 903, 1425
MboI	GATC	5 cut(s)	505, 568, 646, 901, 1423
MboII	GAAGA	5 cut(s)	569, 963, 1091, 1120, 1229
MfeI	CAATTG	3 cut(s)	509, 1212, 1550
MhlI	GDGCHC	3 cut(s)	125, 1312, 1356
Mph1103I	ATGCAT	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	1572
MseI	TTAA	7 cut(s)	189, 408, 528, 1025, 1133, 1170, 1445
MslI	CAYNNNNRTG	2 cut(s)	131, 345
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	150
MunI	CAATTG	3 cut(s)	509, 1212, 1550
MwoI	GCNNNNNNNGC	4 cut(s)	120, 236, 267, 380
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	5 cut(s)	505, 568, 646, 901, 1423
NlaIII	CATG	8 cut(s)	64, 580, 598, 653, 787, 1070, 1424, 1594
NlaIV	GGNNCC	5 cut(s)	124, 148, 271, 1353, 1534
NmuCI	GTSAC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	3 cut(s)	598, 1070, 1594
PciSI	GCTCTTC	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	1572
PfeI	GAWTC	3 cut(s)	19, 448, 560
PkrI	GCNGC	3 cut(s)	52, 76, 1261
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	1532
PsiI	TTATAA	1 cut(s)	1523
Psp124BI	GAGCTC	1 cut(s)	1312
Psp1406I	AACGTT	1 cut(s)	473
Psp5II	RGGWCCY	1 cut(s)	1532
PspCI	CACGTG	1 cut(s)	347
PspN4I	GGNNCC	5 cut(s)	124, 148, 271, 1353, 1534
PspPI	GGNCC	4 cut(s)	113, 916, 1142, 1532
PspPPI	RGGWCCY	1 cut(s)	1532
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	2 cut(s)	131, 345
SacI	GAGCTC	1 cut(s)	1312
SapI	GCTCTTC	1 cut(s)	946
SaqAI	TTAA	7 cut(s)	189, 408, 528, 1025, 1133, 1170, 1445
SatI	GCNGC	3 cut(s)	51, 75, 1260
Sau3AI	GATC	5 cut(s)	505, 568, 646, 901, 1423
Sau96I	GGNCC	4 cut(s)	113, 916, 1142, 1532
SduI	GDGCHC	3 cut(s)	125, 1312, 1356
SfaNI	GCATC	6 cut(s)	327, 349, 670, 1165, 1327, 1553
SinI	GGWCC	2 cut(s)	916, 1532
SmiMI	CAYNNNNRTG	2 cut(s)	131, 345
SsiI	CCGC	6 cut(s)	29, 50, 261, 503, 767, 1594
SspMI	CTAG	4 cut(s)	353, 465, 657, 927
SstI	GAGCTC	1 cut(s)	1312
StyI	CCWWGG	5 cut(s)	78, 109, 783, 1039, 1072
TaaI	ACNGT	3 cut(s)	283, 978, 1297
TaiI	ACGT	5 cut(s)	96, 278, 349, 476, 1437
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	19, 448, 560
Tru1I	TTAA	7 cut(s)	189, 408, 528, 1025, 1133, 1170, 1445
Tru9I	TTAA	7 cut(s)	189, 408, 528, 1025, 1133, 1170, 1445
TscAI	CASTG	1 cut(s)	1462
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	74, 1259
Tsp45I	GTSAC	1 cut(s)	152
TspRI	CASTG	1 cut(s)	1462
VpaK11BI	GGWCC	2 cut(s)	916, 1532
XapI	RAATTY	3 cut(s)	201, 404, 742
XceI	RCATGY	3 cut(s)	598, 1070, 1594
XmiI	GTMKAC	2 cut(s)	278, 1088
XmnI	GAANNNNTTC	1 cut(s)	1572
XspI	CTAG	4 cut(s)	353, 465, 657, 927
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.