Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00562

Orthogroup ID

OG0003345

Physical Location & Seq

Genomic Coordinates Forward (+)

16082 .. 17504

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCTTGAAATGTGTTCATATCTTGTACGTTACTTCTTGTCTGACCTTGATAATAATGATTTTATTTTTGTTGCAGGGATGCATCCACGTGTCCTGGTTGATGGTTTTGAGATTGCCAAAACTGCAACACTTCAATTTATCGAGAAATTTAAAACTCCTGTGGTAATGGGCAGTGAGCCTGACAAAGAAATCCTAAAAATGGTAGCAAGGACAACTGTGCGAACAAAGTTACATGAAGCATTGGCTGATCAATTGACTGACATAGTTGTAAATGCGGTTCTTTGCATCCGCATACCTGAGGAGGCAATTGATCTGTTTATGGTAGAGATTATGCACATGCGCCATAGATTTGATGCAGATACACGTTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCCAATGTATCTCTGGAGTACGAGAAAAGTGAAGTGAACTCTGGATTTTTCTATTCAAATGCGGAGCAGAGAGAAGCAATGGTTTTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

179

Amino Acids

20.59

Weight (kDa)

5.24

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	25 - 177	7.8e-36	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02530 AT5G16070
fragaria_vesca	FvH4_1g11210
malus_domestica	MD09G1086000.v1.1 MD17G1104900.v1.1
prunus_persica	Prupe.3G238800_v2.0.a1
pyrus_communis	pycom09g01130 pycom17g07580
rosa_chinensis	RchiOBHm_Chr2g0098621 RchiOBHm_Chr2g0138531 RchiOBHm_Chr4g0407281 RchiOBHm_Chr4g0409191 RchiOBHm_Chr6g0270681
rosa_laevigata	RLG00000013776 RLG00000016815
rosa_multiflora	Rmu_co8186612.1_g000001 Rmu_sc0000474.1_g000003 Rmu_sc0002106.1_g000012 Rmu_sc0002776.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143840 Rroxscaffold_7G00197690
rosa_rugosa	Rorug02G0073800 Rorug06G0055700
rosa_samantha	Rh2AG121400 Rh2BG125000 Rh2CG126000 Rh2DG127100 Rh5BG537700 Rh6AG175000 Rh6AG275700 Rh6CG174300 Rh6DG166700 Rh7CG256600
rosa_wichuraiana	Rw0G004140 Rw0G012590 Rw6G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	275, 289, 509
AcsI	RAATTY	1 cut(s)	146
AcvI	CACGTG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	27, 467
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	2 cut(s)	88, 362
AgsI	TTSAA	3 cut(s)	8, 134, 504
AjnI	CCWGG	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	342
AxyI	CCTNAGG	1 cut(s)	297
BbrPI	CACGTG	1 cut(s)	89
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	2 cut(s)	247, 388
BfaI	CTAG	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	5 cut(s)	69, 91, 294, 343, 412
BpmI	CTGGAG	1 cut(s)	482
BsaAI	YACGTR	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	95
BseGI	GGATG	4 cut(s)	82, 84, 285, 403
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	247, 310, 388
BspACI	CCGC	3 cut(s)	275, 289, 509
BspCNI	CTCAG	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	531
BssMI	GATC	3 cut(s)	247, 310, 388
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	217
BstBAI	YACGTR	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	4 cut(s)	82, 84, 285, 403
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	3 cut(s)	250, 313, 391
BstMBI	GATC	3 cut(s)	247, 310, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	82, 84, 285, 403
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	26, 466
CviAII	CATG	3 cut(s)	233, 337, 392
CviJI	RGCY	3 cut(s)	178, 245, 449
CviKI_1	RGCY	3 cut(s)	178, 245, 449
CviQI	GTAC	2 cut(s)	26, 466
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	3 cut(s)	249, 312, 390
DpnII	GATC	3 cut(s)	247, 310, 388
DraI	TTTAAA	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	84
FaeI	CATG	3 cut(s)	236, 340, 395
FatI	CATG	3 cut(s)	232, 336, 391
FbaI	TGATCA	2 cut(s)	247, 388
FokI	GGATG	4 cut(s)	69, 91, 272, 390
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	482
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	236, 340, 395
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	5 cut(s)	142, 407, 442, 461, 489
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	423
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	3 cut(s)	28, 88, 364
HpyCH4V	TGCA	6 cut(s)	74, 82, 125, 285, 334, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	3 cut(s)	28, 88, 364
Hsp92II	CATG	3 cut(s)	236, 340, 395
HspAI	GCGC	1 cut(s)	340
Ksp22I	TGATCA	2 cut(s)	247, 388
Kzo9I	GATC	3 cut(s)	247, 310, 388
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	9 cut(s)	60, 80, 107, 171, 192, 309, 420, 446, 474
LweI	GCATC	5 cut(s)	69, 91, 294, 343, 412
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	3 cut(s)	28, 88, 364
MaeIII	GTNAC	3 cut(s)	29, 228, 434
MalI	GATC	3 cut(s)	249, 312, 390
MboI	GATC	3 cut(s)	247, 310, 388
MfeI	CAATTG	2 cut(s)	251, 306
MluCI	AATT	5 cut(s)	134, 146, 251, 306, 430
MnlI	CCTC	3 cut(s)	292, 295, 367
Mph1103I	ATGCAT	1 cut(s)	84
MseI	TTAA	3 cut(s)	150, 533, 538
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	2 cut(s)	251, 306
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	3 cut(s)	247, 310, 388
NlaIII	CATG	3 cut(s)	236, 340, 395
NsiI	ATGCAT	1 cut(s)	84
NspI	RCATGY	1 cut(s)	340
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	93
PspCI	CACGTG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	93
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
RsaI	GTAC	2 cut(s)	27, 467
RsaNI	GTAC	2 cut(s)	26, 466
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	150, 533, 538
Sau3AI	GATC	3 cut(s)	247, 310, 388
ScrFI	CCNGG	1 cut(s)	95
SetI	ASST	5 cut(s)	31, 48, 91, 298, 367
SfaNI	GCATC	5 cut(s)	69, 91, 294, 343, 412
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	134, 146, 251, 306, 430
SsiI	CCGC	3 cut(s)	275, 289, 509
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	3 cut(s)	31, 91, 367
TaqI	TCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	134, 146, 251, 306, 430
Tru1I	TTAA	3 cut(s)	150, 533, 538
Tru9I	TTAA	3 cut(s)	150, 533, 538
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	6, 249, 428
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XspI	CTAG	1 cut(s)	399
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.