RchiOBHm_Chr2g0138531
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003345
Physical Location & Seq
Reverse (-)
56264153 .. 56266694
2542 bp
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UTR
Exon/CDS
Intron
PRQ50920

Sequence Viewer

Length: 801 bp
ATGCATCCACGTGTCCTGGTTGATGGTTTTGAGATTGCCAAAAGTGCAACACTTCAATTTATCGAGAAATTTAAAACTTCTGTGGTAATGGGCAGTGAGCCTGACAAAGAAATCCTAAAAATGGTAGCAAGGACAACTGTGCGAACAAAGTTACATGAAGCATTGGCTGATCAATTGACTGACATAGTTGTAAATGCGGTTCTTTGCATCTGCATACCTGTGGAGGCAATTGATCTGCTTATGGTGGACATTATGCACATGCGCCATAAATTTGATGCAGATACACGTTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCTAATGTATCTCTGGAGTTCGAGAAAAGTGAAGTGAACTCTGGATTTTTCTATTCAAATGCGGAGCAGAGAGAAGCAATGGTTCGTTCTGGTAATGTCAATAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCAGGGATTATTGCTTTGAGAAGAGCAAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTATGGAGGGGAGGTAGTGAACTCTGTAGATGATTTAACTCCTGATTGCCTTGGCTGGGCTGGACTTGTATATGAGCACTTCCTTGGTGAAGAGAAGTACACATTTGTCGAAAATGTGAACAACCCTCATTCTTTCACAATCTTAATCAAAGGGCCTAATGATCATACAATTGCCCAGATTAAGGATGCTGTTCTTATTTACTCTAATTAA

Protein Analysis

266

Amino Acids

29.89

Weight (kDa)

5.86

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 1 - 261 8.7e-66 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 197, 431
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 2 cut(s) 68, 269
AcvI CACGTG 1 cut(s) 11
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 4 cut(s) 121, 514, 646, 772
AflIII ACRYGT 2 cut(s) 10, 284
AgsI TTSAA 2 cut(s) 56, 426
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw21I GWGCWC 1 cut(s) 669
AlwI GGATC 1 cut(s) 497
AoxI GGCC 1 cut(s) 743
ApoI RAATTY 2 cut(s) 68, 269
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 517, 743
AsuHPI GGTGA 1 cut(s) 689
AvaII GGWCC 1 cut(s) 517
BbrPI CACGTG 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 669
BccI CCATC 2 cut(s) 17, 517
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 3 cut(s) 169, 310, 751
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 615
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 517, 743
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 5 cut(s) 13, 216, 265, 334, 766
BpmI CTGGAG 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 640, 673
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 514, 646, 772
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 640, 673
BseGI GGATG 3 cut(s) 4, 325, 781
BseLI CCNNNNNNNGG 4 cut(s) 121, 514, 646, 772
BseMI GCAATG 1 cut(s) 453
BseRI GAGGAG 1 cut(s) 577
BseYI CCCAGC 1 cut(s) 645
BshFI GGCC 1 cut(s) 745
BsiHKAI GWGCWC 1 cut(s) 669
BslI CCNNNNNNNGG 4 cut(s) 121, 514, 646, 772
BsnI GGCC 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 5 cut(s) 169, 232, 310, 502, 751
BspACI CCGC 2 cut(s) 197, 431
BspANI GGCC 1 cut(s) 745
BspPI GGATC 1 cut(s) 497
BspQI GCTCTTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 640, 673
BssMI GATC 5 cut(s) 169, 232, 310, 502, 751
BssT1I CCWWGG 2 cut(s) 640, 673
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 139, 579
Bst6I CTCTTC 2 cut(s) 547, 675
BstBAI YACGTR 1 cut(s) 11
BstF5I GGATG 3 cut(s) 4, 325, 781
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 5 cut(s) 172, 235, 313, 505, 754
BstMBI GATC 5 cut(s) 169, 232, 310, 502, 751
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 615
BsuRI GGCC 1 cut(s) 745
BtsCI GGATG 3 cut(s) 4, 325, 781
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 517, 743
Csp6I GTAC 1 cut(s) 688
CviAII CATG 3 cut(s) 155, 259, 314
CviJI RGCY 7 cut(s) 100, 167, 371, 590, 645, 650, 745
CviKI_1 RGCY 7 cut(s) 100, 167, 371, 590, 645, 650, 745
CviQI GTAC 1 cut(s) 688
DpnI GATC 5 cut(s) 171, 234, 312, 504, 753
DpnII GATC 5 cut(s) 169, 232, 310, 502, 751
DraI TTTAAA 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 547, 675
EarI CTCTTC 2 cut(s) 547, 675
Eco130I CCWWGG 2 cut(s) 640, 673
Eco47I GGWCC 1 cut(s) 517
Eco72I CACGTG 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 640, 673
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 640, 673
FaeI CATG 3 cut(s) 158, 262, 317
FatI CATG 3 cut(s) 154, 258, 313
FbaI TGATCA 3 cut(s) 169, 310, 751
FokI GGATG 2 cut(s) 312, 788
FspBI CTAG 1 cut(s) 321
GlaI GCGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 649
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 1 cut(s) 745
HhaI GCGC 1 cut(s) 264
Hin1II CATG 3 cut(s) 158, 262, 317
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 5 cut(s) 247, 406, 610, 690, 709
Hpy188I TCNGA 1 cut(s) 492
Hpy188III TCNNGA 8 cut(s) 64, 329, 364, 383, 391, 411, 515, 632
Hpy8I GTNNAC 5 cut(s) 247, 406, 610, 690, 709
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 487, 530
HpyCH4III ACNGT 2 cut(s) 139, 579
HpyCH4IV ACGT 2 cut(s) 10, 286
HpyCH4V TGCA 6 cut(s) 4, 47, 207, 213, 256, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpySE526I ACGT 2 cut(s) 10, 286
Hsp92II CATG 3 cut(s) 158, 262, 317
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 3 cut(s) 169, 310, 751
Kzo9I GATC 5 cut(s) 169, 232, 310, 502, 751
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 1 cut(s) 433
LweI GCATC 5 cut(s) 13, 216, 265, 334, 766
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 10, 286
MaeIII GTNAC 2 cut(s) 150, 356
MalI GATC 5 cut(s) 171, 234, 312, 504, 753
MboI GATC 5 cut(s) 169, 232, 310, 502, 751
MboII GAAGA 2 cut(s) 564, 692
MfeI CAATTG 3 cut(s) 173, 228, 759
MhlI GDGCHC 1 cut(s) 669
MnlI CCTC 6 cut(s) 217, 289, 555, 590, 595, 726
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 72, 626, 734, 771, 799
MslI CAYNNNNRTG 2 cut(s) 9, 218
MspR9I CCNGG 1 cut(s) 17
MunI CAATTG 3 cut(s) 173, 228, 759
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 5 cut(s) 169, 232, 310, 502, 751
NlaIII CATG 3 cut(s) 158, 262, 317
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 547
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 15
PspCI CACGTG 1 cut(s) 11
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 1 cut(s) 15
PspPI GGNCC 2 cut(s) 517, 743
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 2 cut(s) 9, 218
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 5 cut(s) 72, 626, 734, 771, 799
Sau3AI GATC 5 cut(s) 169, 232, 310, 502, 751
Sau96I GGNCC 2 cut(s) 517, 743
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 669
SetI ASST 6 cut(s) 13, 220, 289, 373, 522, 606
SfaNI GCATC 5 cut(s) 13, 216, 265, 334, 766
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 2 cut(s) 9, 218
SsiI CCGC 2 cut(s) 197, 431
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 2 cut(s) 640, 673
TaaI ACNGT 2 cut(s) 139, 579
TaiI ACGT 2 cut(s) 13, 289
TaqI TCGA 3 cut(s) 63, 390, 699
TatI WGTACW 1 cut(s) 687
Tru1I TTAA 5 cut(s) 72, 626, 734, 771, 799
Tru9I TTAA 5 cut(s) 72, 626, 734, 771, 799
TscAI CASTG 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 171, 350
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 2 cut(s) 68, 269
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.