FvH4_1g11220

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014043
Physical Location & Seq
Forward (+)
6127944 .. 6129911
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11220.t1

Sequence Viewer

Length: 954 bp
ATGGCTCTTAACCTTGTATTCTTGATCTCAATCCTCATCCTTTCAGTATTTTCTCCGGTGATCAATGCGCTGAGTTCGAACTATTATGACAAAAGCTGTCCTAATGTTGAGCTTCTCGTCTCCAATGCTGTCAAGAAGGCGACAGCTAATGATAAAACTGTCCCTGCTGCACTACTCCGGATGCATTTCCATGATTGCTTCATAAGGGGATGTGACGCATCTGTGTTGTTAAATTCCAAAGGAAACAACAAAGCAGAGAAAGATGGGCCACCAAATATTTCTCTGCATGCATTTTATGTCATTGACAATGCAAAGAAACAAGTGGAGGCTTCATGTCCTGGTGTGGTCTCATGCGCTGATATCTTGGCTCTAGCAGCAAGAGATGCTGTTGTGCAATCTGGAGGCCCAAGCTGGAATGTGCCAAAAGGAAGAAAAGATGGAAGAACATCACTGGCAATCGAAACCAGACAATTGCCAGCTCCAACCTTCAACATTTCACAACTTCAACAGAGCTTCTCTCAAAGAGGCCTGTCCTTGAACGACCTGGTGGCTCTTTCAGGAGGGCACACTCTAGGATTCTCCCACTGCTCATCTTTCCAAAACAGAATCCACAACTTCAATGCCACACACGATGTTGATCCTACGCTGCACTCCTCCTTTGCAGCAAGCTTGAAGAATACATGTCCCATCAAGAATAGGCCTAAGAATGCTGGTGCCACAATGGATCCTTCAGCAACAACTTTTGATAATACATACTTCAAGTTGATCCTCCAAGGGAAGAGCTTGTTTTCTTCAGACCAAGCTCTGCTTAGTTTTCCAAAGACTAAAAATTTGGTTACTAAGTTTGCTAGCTCACAGCAAGCTTTCTTGGATGCTTTTGTGCATTCTATGGTTAAGATGAGTAGCATTACAGGTGGACAAGAGATCAGGAAAGACTGCAGAGTAGTAAACTAA

Protein Analysis

318

Amino Acids

34.28

Weight (kDa)

9.26

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 284 4.5e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42180
fragaria_vesca FvH4_1g11220
malus_domestica MD02G1124700.v1.1 MD15G1238800.v1.1
prunus_persica Prupe.7G173700_v2.0.a1 Prupe.7G173700_v2.0.a1
pyrus_communis pycom02g09740
rosa_chinensis RchiOBHm_Chr2g0098631
rosa_laevigata RLG00000016819
rosa_multiflora Rmu_sc0002776.1_g000019
rosa_roxburghii Rroxscaffold_2G00143830
rosa_rugosa Rorug02G0073800
rosa_samantha Rh2AG121600 Rh2BG125100 Rh2CG126100 Rh2DG127200
rosa_wichuraiana Rw0G004160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 713
AccIII TCCGGA 1 cut(s) 177
AclWI GGATC 4 cut(s) 632, 719, 732, 760
AcsI RAATTY 2 cut(s) 232, 829
AcuI CTGAAG 2 cut(s) 714, 777
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 6 cut(s) 490, 506, 538, 619, 673, 760
AjnI CCWGG 2 cut(s) 337, 543
Alw26I GTCTC 2 cut(s) 124, 352
AlwI GGATC 4 cut(s) 632, 719, 732, 760
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 4 cut(s) 266, 403, 526, 698
ApeKI GCWGC 4 cut(s) 167, 374, 646, 662
ApoI RAATTY 2 cut(s) 232, 829
ArsI GACNNNNNNTTYG 2 cut(s) 814, 846
AspLEI GCGC 2 cut(s) 70, 356
AspS9I GGNCC 2 cut(s) 266, 404
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 77
AsuNHI GCTAGC 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 567
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 713
BbvI GCAGC 4 cut(s) 154, 386, 633, 674
BccI CCATC 3 cut(s) 257, 431, 695
BciT130I CCWGG 2 cut(s) 339, 545
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 124, 352
BfaI CTAG 3 cut(s) 371, 572, 849
BfmI CTRYAG 1 cut(s) 937
BisI GCNGC 4 cut(s) 168, 375, 647, 663
BlsI GCNGC 4 cut(s) 169, 376, 648, 664
Bme1390I CCNGG 2 cut(s) 339, 545
BmgT120I GGNCC 2 cut(s) 266, 404
BmiI GGNNCC 2 cut(s) 715, 726
BmrFI CCNGG 2 cut(s) 339, 545
BmsI GCATC 4 cut(s) 171, 227, 373, 862
BmtI GCTAGC 1 cut(s) 852
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 77
BsaBI GATNNNNATC 2 cut(s) 29, 636
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 772
BsaWI WCCGGW 2 cut(s) 55, 177
Bse1I ACTGG 1 cut(s) 456
Bse8I GATNNNNATC 2 cut(s) 29, 636
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 2 cut(s) 339, 545
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 4 cut(s) 36, 186, 215, 877
BseJI GATNNNNATC 2 cut(s) 29, 636
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 643
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 4 cut(s) 154, 386, 633, 674
BsgI GTGCAG 2 cut(s) 153, 632
BshFI GGCC 4 cut(s) 268, 405, 528, 700
BshNI GGYRCC 1 cut(s) 713
BsiSI CCGG 2 cut(s) 56, 178
BslFI GGGAC 2 cut(s) 146, 669
BsmAI GTCTC 2 cut(s) 124, 352
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 2 cut(s) 146, 669
BsmI GAATGC 2 cut(s) 712, 883
BsnI GGCC 4 cut(s) 268, 405, 528, 700
Bso31I GGTCTC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 567
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 6 cut(s) 24, 60, 637, 724, 765, 924
BspANI GGCC 4 cut(s) 268, 405, 528, 700
BspCNI CTCAG 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 715, 726
BspMAI CTGCAG 1 cut(s) 941
BspOI GCTAGC 1 cut(s) 852
BspPI GGATC 4 cut(s) 632, 719, 732, 760
BspQI GCTCTTC 1 cut(s) 773
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 6 cut(s) 24, 60, 637, 724, 765, 924
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 339, 545
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 773
BstAPI GCANNNNNTGC 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 5 cut(s) 288, 477, 667, 850, 861
BstDEI CTNAG 4 cut(s) 71, 702, 809, 840
BstF5I GGATG 4 cut(s) 36, 186, 215, 877
BstHHI GCGC 2 cut(s) 70, 356
BstKTI GATC 6 cut(s) 27, 63, 640, 727, 768, 927
BstMAI GTCTC 2 cut(s) 124, 352
BstMBI GATC 6 cut(s) 24, 60, 637, 724, 765, 924
BstMWI GCNNNNNNNGC 2 cut(s) 374, 383
BstNI CCWGG 2 cut(s) 339, 545
BstNSI RCATGY 2 cut(s) 290, 684
BstSCI CCNGG 2 cut(s) 337, 543
BstSFI CTRYAG 1 cut(s) 937
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 154, 386, 633, 674
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuRI GGCC 4 cut(s) 268, 405, 528, 700
BtsCI GGATG 4 cut(s) 36, 186, 215, 877
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 2 cut(s) 449, 583
Cac8I GCNNGC 5 cut(s) 288, 477, 667, 850, 861
CfoI GCGC 2 cut(s) 70, 356
Cfr13I GGNCC 2 cut(s) 266, 404
CseI GACGC 1 cut(s) 224
CsiI ACCWGGT 1 cut(s) 543
CviAII CATG 5 cut(s) 191, 287, 333, 351, 681
DdeI CTNAG 4 cut(s) 71, 702, 809, 840
DpnI GATC 6 cut(s) 26, 62, 639, 726, 767, 926
DpnII GATC 6 cut(s) 24, 60, 637, 724, 765, 924
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
Eco130I CCWWGG 1 cut(s) 772
Eco147I AGGCCT 2 cut(s) 528, 700
Eco31I GGTCTC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 714, 777
EcoRII CCWGG 2 cut(s) 337, 543
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 772
EcoT22I ATGCAT 2 cut(s) 186, 292
ErhI CCWWGG 1 cut(s) 772
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 5 cut(s) 194, 290, 336, 354, 684
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 2 cut(s) 146, 669
FatI CATG 5 cut(s) 190, 286, 332, 350, 680
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 168, 375, 647, 663
FokI GGATG 4 cut(s) 23, 193, 222, 884
Fsp4HI GCNGC 4 cut(s) 168, 375, 647, 663
FspBI CTAG 3 cut(s) 371, 572, 849
GlaI GCGC 2 cut(s) 69, 355
GluI GCNGC 4 cut(s) 168, 375, 647, 663
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 4 cut(s) 268, 405, 528, 700
HapII CCGG 2 cut(s) 56, 178
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 70, 356
Hin1II CATG 5 cut(s) 194, 290, 336, 354, 684
Hin6I GCGC 2 cut(s) 68, 354
HinP1I GCGC 2 cut(s) 68, 354
HindIII AAGCTT 2 cut(s) 667, 861
HinfI GANTC 2 cut(s) 576, 606
HpaII CCGG 2 cut(s) 56, 178
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 917, 949
Hpy188I TCNGA 1 cut(s) 796
Hpy188III TCNNGA 7 cut(s) 22, 133, 178, 399, 558, 691, 928
Hpy8I GTNNAC 2 cut(s) 917, 949
HpyAV CCTTC 3 cut(s) 130, 496, 738
HpyCH4III ACNGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 383
HpyF3I CTNAG 4 cut(s) 71, 702, 809, 840
Hsp92II CATG 5 cut(s) 194, 290, 336, 354, 684
HspAI GCGC 2 cut(s) 68, 354
Kpn2I TCCGGA 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 6 cut(s) 24, 60, 637, 724, 765, 924
LguI GCTCTTC 1 cut(s) 773
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 4 cut(s) 154, 386, 633, 674
LweI GCATC 4 cut(s) 171, 227, 373, 862
MabI ACCWGGT 1 cut(s) 543
MaeI CTAG 3 cut(s) 371, 572, 849
MaeIII GTNAC 2 cut(s) 212, 835
MalI GATC 6 cut(s) 26, 62, 639, 726, 767, 926
MboI GATC 6 cut(s) 24, 60, 637, 724, 765, 924
MboII GAAGA 5 cut(s) 441, 453, 685, 783, 790
MfeI CAATTG 1 cut(s) 470
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 1 cut(s) 567
MluCI AATT 3 cut(s) 232, 470, 829
MmeI TCCRAC 1 cut(s) 506
MnlI CCTC 7 cut(s) 44, 319, 395, 518, 554, 664, 779
Mph1103I ATGCAT 2 cut(s) 186, 292
MroI TCCGGA 1 cut(s) 177
MseI TTAA 3 cut(s) 9, 230, 894
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 2 cut(s) 56, 178
MspR9I CCNGG 2 cut(s) 339, 545
MunI CAATTG 1 cut(s) 470
Mva1269I GAATGC 2 cut(s) 712, 883
MvaI CCWGG 2 cut(s) 339, 545
MwoI GCNNNNNNNGC 2 cut(s) 374, 383
NdeII GATC 6 cut(s) 24, 60, 637, 724, 765, 924
NheI GCTAGC 1 cut(s) 848
NlaIII CATG 5 cut(s) 194, 290, 336, 354, 684
NlaIV GGNNCC 2 cut(s) 715, 726
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 186, 292
NspI RCATGY 2 cut(s) 290, 684
NspV TTCGAA 1 cut(s) 77
PaeI GCATGC 1 cut(s) 290
PceI AGGCCT 2 cut(s) 528, 700
PciI ACATGT 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 773
PctI GAATGC 2 cut(s) 712, 883
PfeI GAWTC 2 cut(s) 576, 606
PkrI GCNGC 4 cut(s) 169, 376, 648, 664
PscI ACATGT 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 337, 543
PspGI CCWGG 2 cut(s) 337, 543
PspN4I GGNNCC 2 cut(s) 715, 726
PspPI GGNCC 2 cut(s) 266, 404
PstI CTGCAG 1 cut(s) 941
PsuI RGATCY 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 773
SaqAI TTAA 3 cut(s) 9, 230, 894
SatI GCNGC 4 cut(s) 168, 375, 647, 663
Sau3AI GATC 6 cut(s) 24, 60, 637, 724, 765, 924
Sau96I GGNCC 2 cut(s) 266, 404
ScrFI CCNGG 2 cut(s) 339, 545
SduI GDGCHC 1 cut(s) 567
SexAI ACCWGGT 1 cut(s) 543
SfaNI GCATC 4 cut(s) 171, 227, 373, 862
SfcI CTRYAG 1 cut(s) 937
SfuI TTCGAA 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 189
SphI GCATGC 1 cut(s) 290
Sse9I AATT 3 cut(s) 232, 470, 829
SseBI AGGCCT 2 cut(s) 528, 700
SspI AATATT 1 cut(s) 277
SspMI CTAG 3 cut(s) 371, 572, 849
StuI AGGCCT 2 cut(s) 528, 700
StyD4I CCNGG 2 cut(s) 337, 543
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 77, 459
TasI AATT 3 cut(s) 232, 470, 829
TfiI GAWTC 2 cut(s) 576, 606
Tru1I TTAA 3 cut(s) 9, 230, 894
Tru9I TTAA 3 cut(s) 9, 230, 894
TscAI CASTG 2 cut(s) 456, 590
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 4 cut(s) 167, 374, 646, 662
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 190, 321
TspRI CASTG 2 cut(s) 456, 590
XapI RAATTY 2 cut(s) 232, 829
XceI RCATGY 2 cut(s) 290, 684
XspI CTAG 3 cut(s) 371, 572, 849
Zsp2I ATGCAT 2 cut(s) 186, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.