pycom02g09740

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014043
Physical Location & Seq
Forward (+)
6738647 .. 6740258
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09740.3

Sequence Viewer

Length: 1131 bp
ATGGCAATTGTCTTGTACCTCTGCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTTCCTCTCTCTCCCTCTCCCTCTCCCTCTCTATAAATACAACACTAATCCATTTTCATTTCCCACACTTAAACAAAGTTAAGAGAGTTAAGCAAGAGAGTTCTAAACCTCTAAAAATGGCTTTCAATCTAGCATTCTTGAGCTCAATCTTCATCATCCTTTCGGTATTTTCTACAGTGACTAACGCGCTGAGCTCGAATTACTACGATAAGAGCTGTCCCAATGTCGATCAAATCGTTTCTAATGCCGTCAAGAAGGCGACATCCAACGACAGAACTGTCCCGGCTGCTCTACTCCGGATGCACTTCCACGACTGCTTCATTAGGGGCTGTGATGCATCTGTGCTGTTGAACTCCAAAGGAGGCAACAAAGCTGAGAAAGATGGGCCACCAAATATTTCTCTGCATTCGTTTTTTGTCATTGACGATGCAAAGACACAAGTGGAGGCTTCCTGCCCTGGTGTCGTTTCATGTGCTGATATCTTGGCTTTGGCAGCAAGGGATGCTGTTGTGCAATCCGGAGGTCCGAACTGGGCTGTGCCGAAAGGAAGAAAGGATGGAAGAACATCGAAGGCTAGCGAGACCGTGCAGCTGCCGGCTCCAACCTTCAACATATCTCAACTGCAGCAGAGCTTCTCGCAGAGAGGTCTGTCCTTGAACGACCTGGTGGCTCTTTCAGGAGGGCACACTCTGGGGTTCTCCCACTGCTCATCGTTCCAGAACAGAATCCACAACTTCAACGCCACACACGACGTTGATCCAACACTGAACCCGTCCTTTGCTGCAAAGTTGAAGAATACGTGTCCCATCAAGAACAGGCCGAAGAATGCCGGTGCCACCATGGATCCTTCTACAACAACCTTTGATAATACATACTTCAAGTTGATCCTCCAAGGGAAGAGCTTGTTTTCTTCGGATCAAGCTCTGCTCAGTTTTCCGAAGACTAAAGGTTTGGTTACTCAGTTTGCCTCCTCAAAACAAGCGTTCTTAGATGCTTTCGTGAATTCTATGATAAAGATGAGCAGCATTAATGGTGGGCAAGAGATCAGGAAGGACTGCAGGGTAATAAATTAA

Protein Analysis

377

Amino Acids

40.77

Weight (kDa)

9.43

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42180
fragaria_vesca FvH4_1g11220
malus_domestica MD02G1124700.v1.1 MD15G1238800.v1.1
prunus_persica Prupe.7G173700_v2.0.a1 Prupe.7G173700_v2.0.a1
pyrus_communis pycom02g09740
rosa_chinensis RchiOBHm_Chr2g0098631
rosa_laevigata RLG00000016819
rosa_multiflora Rmu_sc0002776.1_g000019
rosa_roxburghii Rroxscaffold_2G00143830
rosa_rugosa Rorug02G0073800
rosa_samantha Rh2AG121600 Rh2BG125100 Rh2CG126100 Rh2DG127200
rosa_wichuraiana Rw0G004160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 890
AccII CGCG 1 cut(s) 245
AccIII TCCGGA 2 cut(s) 354, 575
AclWI GGATC 5 cut(s) 809, 896, 909, 937, 981
AcsI RAATTY 1 cut(s) 1060
AfaI GTAC 1 cut(s) 17
AflIII ACRYGT 1 cut(s) 857
AgsI TTSAA 7 cut(s) 184, 409, 667, 715, 796, 850, 937
AjnI CCWGG 2 cut(s) 514, 720
AluBI AGCT 8 cut(s) 201, 252, 273, 431, 649, 690, 960, 980
AluI AGCT 8 cut(s) 201, 252, 273, 431, 649, 690, 960, 980
Alw21I GWGCWC 2 cut(s) 203, 254
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 5 cut(s) 809, 896, 909, 937, 981
Aor13HI TCCGGA 2 cut(s) 354, 575
AoxI GGCC 2 cut(s) 443, 875
ApeKI GCWGC 7 cut(s) 344, 551, 646, 649, 682, 839, 1080
ApoI RAATTY 1 cut(s) 1060
ArsI GACNNNNNNTTYG 2 cut(s) 991, 1023
AseI ATTAAT 1 cut(s) 1086
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 443, 581
AsuC2I CCSGG 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 632
AvaII GGWCC 1 cut(s) 581
BaeGI GKGCMC 1 cut(s) 744
BamHI GGATCC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 890
BanII GRGCYC 2 cut(s) 203, 254
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 2 cut(s) 203, 254
BbvI GCAGC 7 cut(s) 331, 563, 636, 658, 694, 826, 1092
BccI CCATC 3 cut(s) 434, 608, 872
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 2 cut(s) 516, 722
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 2 cut(s) 188, 633
BfmI CTRYAG 3 cut(s) 231, 680, 1114
BisI GCNGC 7 cut(s) 345, 552, 647, 650, 683, 840, 1081
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 7 cut(s) 346, 553, 648, 651, 684, 841, 1082
Bme1390I CCNGG 3 cut(s) 341, 516, 722
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 2 cut(s) 443, 581
BmiI GGNNCC 3 cut(s) 657, 892, 903
BmrFI CCNGG 3 cut(s) 341, 516, 722
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 6 cut(s) 348, 382, 404, 475, 550, 1039
BmtI GCTAGC 1 cut(s) 636
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 1004
Bpu1102I GCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 514, 897, 949
BsaWI WCCGGW 2 cut(s) 354, 575
Bse118I RCCGGY 2 cut(s) 652, 887
Bse1I ACTGG 1 cut(s) 593
BseAI TCCGGA 2 cut(s) 354, 575
BseBI CCWGG 2 cut(s) 516, 722
BseDI CCNNGG 3 cut(s) 514, 897, 949
BseGI GGATG 5 cut(s) 213, 320, 363, 565, 619
BseMII CTCAG 4 cut(s) 239, 423, 1000, 1031
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 1 cut(s) 1018
BseSI GKGCMC 1 cut(s) 744
BseXI GCAGC 7 cut(s) 331, 563, 636, 658, 694, 826, 1092
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 2 cut(s) 445, 877
BshNI GGYRCC 1 cut(s) 890
BsiHKAI GWGCWC 2 cut(s) 203, 254
BsiSI CCGG 5 cut(s) 341, 355, 576, 653, 888
BslFI GGGAC 3 cut(s) 261, 323, 846
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 3 cut(s) 261, 323, 846
BsmI GAATGC 3 cut(s) 191, 463, 889
BsnI GGCC 2 cut(s) 445, 877
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 3 cut(s) 203, 254, 744
Bsp13I TCCGGA 2 cut(s) 354, 575
Bsp143I GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
Bsp1720I GCTNAGC 1 cut(s) 248
Bsp19I CCATGG 1 cut(s) 897
BspANI GGCC 2 cut(s) 445, 877
BspCNI CTCAG 4 cut(s) 240, 424, 999, 1030
BspEI TCCGGA 2 cut(s) 354, 575
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 3 cut(s) 657, 892, 903
BspMAI CTGCAG 2 cut(s) 684, 1118
BspOI GCTAGC 1 cut(s) 636
BspPI GGATC 5 cut(s) 809, 896, 909, 937, 981
BspQI GCTCTTC 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 632
BsrFI RCCGGY 2 cut(s) 652, 887
BsrI ACTGG 1 cut(s) 593
BssAI RCCGGY 2 cut(s) 652, 887
BssECI CCNNGG 3 cut(s) 514, 897, 949
BssMI GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
BssT1I CCWWGG 2 cut(s) 897, 949
Bst2UI CCWGG 2 cut(s) 516, 722
Bst4CI ACNGT 3 cut(s) 235, 337, 643
Bst6I CTCTTC 1 cut(s) 950
BstAPI GCANNNNNTGC 1 cut(s) 560
BstBAI YACGTR 1 cut(s) 858
BstC8I GCNNGC 2 cut(s) 634, 654
BstDEI CTNAG 5 cut(s) 248, 432, 986, 1017, 1045
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 5 cut(s) 213, 320, 363, 565, 619
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 6 cut(s) 289, 817, 904, 945, 976, 1104
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
BstMWI GCNNNNNNNGC 2 cut(s) 551, 560
BstNI CCWGG 2 cut(s) 516, 722
BstSCI CCNGG 3 cut(s) 339, 514, 720
BstSFI CTRYAG 3 cut(s) 231, 680, 1114
BstSLI GKGCMC 1 cut(s) 744
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 7 cut(s) 331, 563, 636, 658, 694, 826, 1092
BstV2I GAAGAC 1 cut(s) 1004
BstX2I RGATCY 1 cut(s) 901
BstYI RGATCY 1 cut(s) 901
BsuRI GGCC 2 cut(s) 445, 877
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 5 cut(s) 213, 320, 363, 565, 619
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 3 cut(s) 240, 760, 821
Cac8I GCNNGC 2 cut(s) 634, 654
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 2 cut(s) 652, 887
Cfr13I GGNCC 2 cut(s) 443, 581
CsiI ACCWGGT 1 cut(s) 720
Csp6I GTAC 1 cut(s) 16
CviAII CATG 2 cut(s) 528, 898
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 5 cut(s) 248, 432, 986, 1017, 1045
DpnI GATC 6 cut(s) 288, 816, 903, 944, 975, 1103
DpnII GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 950
EarI CTCTTC 1 cut(s) 950
Ecl136II GAGCTC 2 cut(s) 201, 252
Eco130I CCWWGG 2 cut(s) 897, 949
Eco24I GRGCYC 2 cut(s) 203, 254
Eco31I GGTCTC 1 cut(s) 632
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 581
Eco53kI GAGCTC 2 cut(s) 201, 252
EcoICRI GAGCTC 2 cut(s) 201, 252
EcoRI GAATTC 1 cut(s) 1060
EcoRII CCWGG 2 cut(s) 514, 720
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 2 cut(s) 897, 949
EcoT22I ATGCAT 1 cut(s) 397
EcoT38I GRGCYC 2 cut(s) 203, 254
ErhI CCWWGG 2 cut(s) 897, 949
FaeI CATG 2 cut(s) 531, 901
FaiI YATR 6 cut(s) 92, 529, 671, 899, 931, 1067
FaqI GGGAC 3 cut(s) 261, 323, 846
FatI CATG 2 cut(s) 527, 897
Fnu4HI GCNGC 7 cut(s) 345, 552, 647, 650, 683, 840, 1081
FokI GGATG 5 cut(s) 200, 307, 370, 572, 626
FriOI GRGCYC 2 cut(s) 203, 254
Fsp4HI GCNGC 7 cut(s) 345, 552, 647, 650, 683, 840, 1081
FspBI CTAG 2 cut(s) 188, 633
GlaI GCGC 1 cut(s) 246
GluI GCNGC 7 cut(s) 345, 552, 647, 650, 683, 840, 1081
HaeIII GGCC 2 cut(s) 445, 877
HapII CCGG 5 cut(s) 341, 355, 576, 653, 888
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 531, 901
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 1 cut(s) 783
HpaII CCGG 5 cut(s) 341, 355, 576, 653, 888
Hpy188I TCNGA 3 cut(s) 585, 973, 996
Hpy188III TCNNGA 9 cut(s) 196, 310, 355, 576, 735, 775, 868, 1057, 1105
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 5 cut(s) 307, 622, 673, 915, 1102
HpyCH4III ACNGT 3 cut(s) 235, 337, 643
HpyCH4IV ACGT 2 cut(s) 810, 857
HpyCH4V TGCA 9 cut(s) 361, 395, 463, 488, 571, 646, 682, 842, 1116
HpyF10VI GCNNNNNNNGC 2 cut(s) 551, 560
HpyF3I CTNAG 5 cut(s) 248, 432, 986, 1017, 1045
HpySE526I ACGT 2 cut(s) 810, 857
Hsp92II CATG 2 cut(s) 531, 901
HspAI GCGC 1 cut(s) 245
Kpn2I TCCGGA 2 cut(s) 354, 575
KroI GCCGGC 1 cut(s) 652
KroNI GCCGGC 1 cut(s) 654
Kzo9I GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
LguI GCTCTTC 1 cut(s) 950
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 7 cut(s) 331, 563, 636, 658, 694, 826, 1092
LweI GCATC 6 cut(s) 348, 382, 404, 475, 550, 1039
MabI ACCWGGT 1 cut(s) 720
MaeI CTAG 2 cut(s) 188, 633
MaeII ACGT 2 cut(s) 810, 857
MaeIII GTNAC 2 cut(s) 235, 1012
MalI GATC 6 cut(s) 288, 816, 903, 944, 975, 1103
MboI GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
MboII GAAGA 8 cut(s) 199, 618, 630, 862, 892, 960, 967, 1009
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 3 cut(s) 203, 254, 744
MluCI AATT 4 cut(s) 6, 256, 1060, 1126
MmeI TCCRAC 3 cut(s) 348, 683, 842
Mph1103I ATGCAT 1 cut(s) 397
MroI TCCGGA 2 cut(s) 354, 575
MroNI GCCGGC 1 cut(s) 652
MseI TTAA 5 cut(s) 128, 138, 147, 1086, 1129
MspA1I CMGCKG 1 cut(s) 649
MspI CCGG 5 cut(s) 341, 355, 576, 653, 888
MspR9I CCNGG 3 cut(s) 341, 516, 722
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 3 cut(s) 191, 463, 889
MvaI CCWGG 2 cut(s) 516, 722
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 551, 560
NaeI GCCGGC 1 cut(s) 654
NciI CCSGG 1 cut(s) 341
NcoI CCATGG 1 cut(s) 897
NdeII GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
NgoMIV GCCGGC 1 cut(s) 652
NheI GCTAGC 1 cut(s) 632
NlaIII CATG 2 cut(s) 531, 901
NlaIV GGNNCC 3 cut(s) 657, 892, 903
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 950
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 804
PctI GAATGC 3 cut(s) 191, 463, 889
PdiI GCCGGC 1 cut(s) 654
PfeI GAWTC 1 cut(s) 783
PkrI GCNGC 7 cut(s) 346, 553, 648, 651, 684, 841, 1082
Ppu21I YACGTR 1 cut(s) 858
PshBI ATTAAT 1 cut(s) 1086
Psp124BI GAGCTC 2 cut(s) 203, 254
Psp6I CCWGG 2 cut(s) 514, 720
PspGI CCWGG 2 cut(s) 514, 720
PspN4I GGNNCC 3 cut(s) 657, 892, 903
PspPI GGNCC 2 cut(s) 443, 581
PstI CTGCAG 2 cut(s) 684, 1118
PsuI RGATCY 1 cut(s) 901
PvuII CAGCTG 1 cut(s) 649
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SacI GAGCTC 2 cut(s) 203, 254
SapI GCTCTTC 1 cut(s) 950
SaqAI TTAA 5 cut(s) 128, 138, 147, 1086, 1129
SatI GCNGC 7 cut(s) 345, 552, 647, 650, 683, 840, 1081
Sau3AI GATC 6 cut(s) 286, 814, 901, 942, 973, 1101
Sau96I GGNCC 2 cut(s) 443, 581
ScrFI CCNGG 3 cut(s) 341, 516, 722
SduI GDGCHC 3 cut(s) 203, 254, 744
SexAI ACCWGGT 1 cut(s) 720
SfaNI GCATC 6 cut(s) 348, 382, 404, 475, 550, 1039
SfcI CTRYAG 3 cut(s) 231, 680, 1114
SinI GGWCC 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 4 cut(s) 6, 256, 1060, 1126
SspI AATATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 188, 633
SstI GAGCTC 2 cut(s) 203, 254
StyD4I CCNGG 3 cut(s) 339, 514, 720
StyI CCWWGG 2 cut(s) 897, 949
TaaI ACNGT 3 cut(s) 235, 337, 643
TaiI ACGT 2 cut(s) 813, 860
TaqI TCGA 3 cut(s) 254, 285, 626
TasI AATT 4 cut(s) 6, 256, 1060, 1126
TfiI GAWTC 1 cut(s) 783
Tru1I TTAA 5 cut(s) 128, 138, 147, 1086, 1129
Tru9I TTAA 5 cut(s) 128, 138, 147, 1086, 1129
TscAI CASTG 3 cut(s) 240, 767, 828
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 7 cut(s) 344, 551, 646, 649, 682, 839, 1080
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 104, 199, 367, 516
TspRI CASTG 3 cut(s) 240, 767, 828
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 1 cut(s) 1086
XapI RAATTY 1 cut(s) 1060
XspI CTAG 2 cut(s) 188, 633
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.