RchiOBHm_Chr2g0098631

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014043
Physical Location & Seq
Forward (+)
11051289 .. 11052693
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47342

Sequence Viewer

Length: 954 bp
ATGGCTTTTAACCTTGTGTTCTTGAGCTCAATCCTCATCCTTTCAGTATTTTCTCCAGTGATCAATGCGCTGAGCTCGAACTATTATGACAAAAGCTGTCCTAATGTTGAGCTTCTCGTCTCCGATGCTGTCAAGAAGGCGACAGCTAACGATAAAACTGTCCCTGCTGCACTACTCCGGATGCATTTCCATGATTGCTTCATAAGGGGTTGTGATGCATCTGTGTTGTTAAATTCCAAAGGAAACAACAAAGCAGAGAAAGATGGGCCACCAAATATTTCTTTGCATGCATTTTATGTCATTGACAATGCAAAGAAACAAGTGGAGGCTTCATGTCCTGGTGTGGTCTCATGCGCTGATATCTTGGCTCTAGCAGCAAGAGATGCTGTTGTGCAATCTGGAGGTCCAAGCTGGAATGTGCCAAAAGGAAGAAAAGATGGAAGAACATCAGTGGCAACTGAAACCAGACAATTACCAGCACCAACCTTCAACATTTCCCAACTCCAACAGAGCTTCTCTCAAAGAGGCCTGTCCTTGAACGACCTGGTGGCACTTTCAGGAGGGCACACTCTAGGGTTCTCCCACTGCTCATCTTTCCAAAACAGAATCCACAACTTCAATGCCACACACGACGTCGATCCTACGCTGCACTCATCCTTTGCAGCAAGCTTGAAGAATACATGTCCCATCAAGAATAGGCCGAAAAATGCCGGTGCCACAATGGATCCTTCTGCAACAACTTTTGATAACACATACTTCAAGTTGATCCTCCAAGGGAAGAGCTTGTTTTCTTCAGACCAAGCTCTGCTTGATTTTCCAAAGACTAAAAATTTGGTTAGCAAGTTTGCTAGCTCACAGCAAGCTTTCTTGGATGCTTTTGTGAATTCTATGATTAAGATGAGTAGCATTACAGGTGGACAAGAGGTCAGGAAAGACTGCAGAGTAGTAAATTAA

Protein Analysis

317

Amino Acids

34.25

Weight (kDa)

9.08

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 284 5.1e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42180
fragaria_vesca FvH4_1g11220
malus_domestica MD02G1124700.v1.1 MD15G1238800.v1.1
prunus_persica Prupe.7G173700_v2.0.a1 Prupe.7G173700_v2.0.a1
pyrus_communis pycom02g09740
rosa_chinensis RchiOBHm_Chr2g0098631
rosa_laevigata RLG00000016819
rosa_multiflora Rmu_sc0002776.1_g000019
rosa_roxburghii Rroxscaffold_2G00143830
rosa_rugosa Rorug02G0073800
rosa_samantha Rh2AG121600 Rh2BG125100 Rh2CG126100 Rh2DG127200
rosa_wichuraiana Rw0G004160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 636
AccB1I GGYRCC 1 cut(s) 713
AccIII TCCGGA 1 cut(s) 177
AclWI GGATC 4 cut(s) 632, 719, 732, 760
AcsI RAATTY 3 cut(s) 232, 829, 883
AcuI CTGAAG 1 cut(s) 777
AcyI GRCGYC 1 cut(s) 633
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 5 cut(s) 490, 538, 619, 673, 760
AhdI GACNNNNNGTC 1 cut(s) 923
AjnI CCWGG 2 cut(s) 337, 543
Alw21I GWGCWC 2 cut(s) 29, 77
Alw26I GTCTC 2 cut(s) 124, 352
AlwI GGATC 4 cut(s) 632, 719, 732, 760
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 3 cut(s) 266, 526, 698
ApeKI GCWGC 4 cut(s) 167, 374, 646, 662
ApoI RAATTY 3 cut(s) 232, 829, 883
ArsI GACNNNNNNTTYG 2 cut(s) 814, 846
AspLEI GCGC 2 cut(s) 70, 356
AspS9I GGNCC 2 cut(s) 266, 404
AsuNHI GCTAGC 1 cut(s) 848
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 567
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 713
BanII GRGCYC 2 cut(s) 29, 77
Bbv12I GWGCWC 2 cut(s) 29, 77
BbvI GCAGC 4 cut(s) 154, 386, 633, 674
BccI CCATC 3 cut(s) 257, 431, 695
BciT130I CCWGG 2 cut(s) 339, 545
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 124, 352
BfaI CTAG 3 cut(s) 371, 572, 849
BfmI CTRYAG 1 cut(s) 937
BisI GCNGC 4 cut(s) 168, 375, 647, 663
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 4 cut(s) 169, 376, 648, 664
Bme1390I CCNGG 2 cut(s) 339, 545
Bme18I GGWCC 1 cut(s) 404
BmeRI GACNNNNNGTC 1 cut(s) 923
BmgT120I GGNCC 2 cut(s) 266, 404
BmiI GGNNCC 2 cut(s) 715, 726
BmrFI CCNGG 2 cut(s) 339, 545
BmsI GCATC 6 cut(s) 115, 171, 205, 227, 373, 862
BmtI GCTAGC 1 cut(s) 852
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 2 cut(s) 39, 420
Bpu1102I GCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 772
BsaWI WCCGGW 1 cut(s) 177
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 2 cut(s) 339, 545
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 4 cut(s) 36, 186, 653, 877
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 4 cut(s) 154, 386, 633, 674
BsgI GTGCAG 2 cut(s) 153, 632
BshFI GGCC 3 cut(s) 268, 528, 700
BshNI GGYRCC 1 cut(s) 713
BsiHKAI GWGCWC 2 cut(s) 29, 77
BsiSI CCGG 2 cut(s) 178, 711
BslFI GGGAC 2 cut(s) 146, 669
BsmAI GTCTC 2 cut(s) 124, 352
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 2 cut(s) 146, 669
BsnI GGCC 3 cut(s) 268, 528, 700
Bso31I GGTCTC 1 cut(s) 352
Bsp1286I GDGCHC 3 cut(s) 29, 77, 567
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 4 cut(s) 60, 637, 724, 765
Bsp1720I GCTNAGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 268, 528, 700
BspCNI CTCAG 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 715, 726
BspMAI CTGCAG 1 cut(s) 941
BspOI GCTAGC 1 cut(s) 852
BspPI GGATC 4 cut(s) 632, 719, 732, 760
BspQI GCTCTTC 1 cut(s) 773
BspT107I GGYRCC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 4 cut(s) 60, 637, 724, 765
BssNI GRCGYC 1 cut(s) 633
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 339, 545
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 773
BstACI GRCGYC 1 cut(s) 633
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 4 cut(s) 288, 667, 850, 861
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 4 cut(s) 36, 186, 653, 877
BstHHI GCGC 2 cut(s) 70, 356
BstKTI GATC 4 cut(s) 63, 640, 727, 768
BstMAI GTCTC 2 cut(s) 124, 352
BstMBI GATC 4 cut(s) 60, 637, 724, 765
BstMWI GCNNNNNNNGC 2 cut(s) 374, 383
BstNI CCWGG 2 cut(s) 339, 545
BstNSI RCATGY 2 cut(s) 290, 684
BstSCI CCNGG 2 cut(s) 337, 543
BstSFI CTRYAG 1 cut(s) 937
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 154, 386, 633, 674
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuRI GGCC 3 cut(s) 268, 528, 700
BtsCI GGATG 4 cut(s) 36, 186, 653, 877
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 3 cut(s) 63, 456, 583
Cac8I GCNNGC 4 cut(s) 288, 667, 850, 861
CfoI GCGC 2 cut(s) 70, 356
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 266, 404
CsiI ACCWGGT 1 cut(s) 543
CviAII CATG 5 cut(s) 191, 287, 333, 351, 681
DdeI CTNAG 1 cut(s) 71
DpnI GATC 4 cut(s) 62, 639, 726, 767
DpnII GATC 4 cut(s) 60, 637, 724, 765
DriI GACNNNNNGTC 1 cut(s) 923
Eam1104I CTCTTC 1 cut(s) 773
Eam1105I GACNNNNNGTC 1 cut(s) 923
EarI CTCTTC 1 cut(s) 773
Ecl136II GAGCTC 2 cut(s) 27, 75
Eco130I CCWWGG 1 cut(s) 772
Eco147I AGGCCT 1 cut(s) 528
Eco24I GRGCYC 2 cut(s) 29, 77
Eco31I GGTCTC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 404
Eco53kI GAGCTC 2 cut(s) 27, 75
Eco57I CTGAAG 1 cut(s) 777
EcoICRI GAGCTC 2 cut(s) 27, 75
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 2 cut(s) 337, 543
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 772
EcoT22I ATGCAT 3 cut(s) 186, 220, 292
EcoT38I GRGCYC 2 cut(s) 29, 77
ErhI CCWWGG 1 cut(s) 772
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 5 cut(s) 194, 290, 336, 354, 684
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 2 cut(s) 146, 669
FatI CATG 5 cut(s) 190, 286, 332, 350, 680
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 168, 375, 647, 663
FokI GGATG 4 cut(s) 23, 193, 640, 884
FriOI GRGCYC 2 cut(s) 29, 77
Fsp4HI GCNGC 4 cut(s) 168, 375, 647, 663
FspBI CTAG 3 cut(s) 371, 572, 849
GlaI GCGC 2 cut(s) 69, 355
GluI GCNGC 4 cut(s) 168, 375, 647, 663
GsuI CTGGAG 2 cut(s) 39, 420
HaeIII GGCC 3 cut(s) 268, 528, 700
HapII CCGG 2 cut(s) 178, 711
HhaI GCGC 2 cut(s) 70, 356
Hin1I GRCGYC 1 cut(s) 633
Hin1II CATG 5 cut(s) 194, 290, 336, 354, 684
Hin6I GCGC 2 cut(s) 68, 354
HinP1I GCGC 2 cut(s) 68, 354
HindIII AAGCTT 2 cut(s) 667, 861
HinfI GANTC 1 cut(s) 606
HpaII CCGG 2 cut(s) 178, 711
Hpy166II GTNNAC 1 cut(s) 917
Hpy188I TCNGA 2 cut(s) 124, 796
Hpy188III TCNNGA 7 cut(s) 22, 133, 178, 399, 558, 691, 928
Hpy8I GTNNAC 1 cut(s) 917
Hpy99I CGWCG 2 cut(s) 635, 638
HpyAV CCTTC 3 cut(s) 130, 496, 738
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 383
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 633
Hsp92I GRCGYC 1 cut(s) 633
Hsp92II CATG 5 cut(s) 194, 290, 336, 354, 684
HspAI GCGC 2 cut(s) 68, 354
Kpn2I TCCGGA 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 4 cut(s) 60, 637, 724, 765
LguI GCTCTTC 1 cut(s) 773
Lsp1109I GCAGC 4 cut(s) 154, 386, 633, 674
LweI GCATC 6 cut(s) 115, 171, 205, 227, 373, 862
MabI ACCWGGT 1 cut(s) 543
MaeI CTAG 3 cut(s) 371, 572, 849
MaeII ACGT 1 cut(s) 633
MalI GATC 4 cut(s) 62, 639, 726, 767
MboI GATC 4 cut(s) 60, 637, 724, 765
MboII GAAGA 5 cut(s) 441, 453, 685, 783, 790
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 3 cut(s) 29, 77, 567
MluCI AATT 5 cut(s) 232, 470, 829, 883, 949
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 7 cut(s) 44, 319, 395, 518, 554, 779, 916
Mph1103I ATGCAT 3 cut(s) 186, 220, 292
MroI TCCGGA 1 cut(s) 177
MseI TTAA 4 cut(s) 9, 230, 894, 952
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 2 cut(s) 178, 711
MspR9I CCNGG 2 cut(s) 339, 545
MvaI CCWGG 2 cut(s) 339, 545
MwoI GCNNNNNNNGC 2 cut(s) 374, 383
NdeII GATC 4 cut(s) 60, 637, 724, 765
NheI GCTAGC 1 cut(s) 848
NlaIII CATG 5 cut(s) 194, 290, 336, 354, 684
NlaIV GGNNCC 2 cut(s) 715, 726
NsiI ATGCAT 3 cut(s) 186, 220, 292
NspI RCATGY 2 cut(s) 290, 684
PaeI GCATGC 1 cut(s) 290
PceI AGGCCT 1 cut(s) 528
PciI ACATGT 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 773
PfeI GAWTC 1 cut(s) 606
PkrI GCNGC 4 cut(s) 169, 376, 648, 664
PscI ACATGT 1 cut(s) 680
Psp124BI GAGCTC 2 cut(s) 29, 77
Psp6I CCWGG 2 cut(s) 337, 543
PspGI CCWGG 2 cut(s) 337, 543
PspN4I GGNNCC 2 cut(s) 715, 726
PspPI GGNCC 2 cut(s) 266, 404
PstI CTGCAG 1 cut(s) 941
PsuI RGATCY 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 29, 77
SapI GCTCTTC 1 cut(s) 773
SaqAI TTAA 4 cut(s) 9, 230, 894, 952
SatI GCNGC 4 cut(s) 168, 375, 647, 663
Sau3AI GATC 4 cut(s) 60, 637, 724, 765
Sau96I GGNCC 2 cut(s) 266, 404
ScrFI CCNGG 2 cut(s) 339, 545
SduI GDGCHC 3 cut(s) 29, 77, 567
SexAI ACCWGGT 1 cut(s) 543
SfaNI GCATC 6 cut(s) 115, 171, 205, 227, 373, 862
SfcI CTRYAG 1 cut(s) 937
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SphI GCATGC 1 cut(s) 290
Sse9I AATT 5 cut(s) 232, 470, 829, 883, 949
SseBI AGGCCT 1 cut(s) 528
SspI AATATT 1 cut(s) 277
SspMI CTAG 3 cut(s) 371, 572, 849
SstI GAGCTC 2 cut(s) 29, 77
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 337, 543
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 636
TaqI TCGA 2 cut(s) 77, 636
TasI AATT 5 cut(s) 232, 470, 829, 883, 949
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 4 cut(s) 9, 230, 894, 952
Tru9I TTAA 4 cut(s) 9, 230, 894, 952
TscAI CASTG 3 cut(s) 63, 456, 590
TseI GCWGC 4 cut(s) 167, 374, 646, 662
TspDTI ATGAA 2 cut(s) 190, 321
TspRI CASTG 3 cut(s) 63, 456, 590
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 3 cut(s) 232, 829, 883
XceI RCATGY 2 cut(s) 290, 684
XspI CTAG 3 cut(s) 371, 572, 849
ZraI GACGTC 1 cut(s) 634
Zsp2I ATGCAT 3 cut(s) 186, 220, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.