Prupe.7G173700_v2.0.a1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014043
Physical Location & Seq
Reverse (-)
17390089 .. 17392018
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G173700.1

Sequence Viewer

Length: 1059 bp
ATGGCCTTTAATCTTGCATTCTTGAGCTCAGTCCTCATCATCCTTTCAGCCTTTTCCCCGGTGATTACCGCACTGAGCTCGAATTATTACGATAAGAGCTGTCCTAACGTTGACCAAATAGTTTCAAATGCTGTCAAGAAAGCGGCAGCTAATGACAGAACTGTCCCGGCTGCTCTGCTCAGGATGCATTTCCATGACTGTTTCATAAGGGGTTGTGATGCCTCTGTGTTGTTAAATTCCAAAGGGAGCAACCAAGCAGAGAAAGATGGGCCACCAAATATTTCTTTGCATGCATTTTATGTCATTGACAATGCAAAGAAACAAGTGGAGGCTTCCTGCCCTGGTGTGGTCTCATGTGCTGATATCTTGGCTCTAGCTGCAAGGGATGCTGTTGTGCAATCTGGAGGTCCAAACTGGGATGTGCCAAAAGGAAGAAAAGATGGAAGAACATCAAAGGCTACTGAAACCAGACAATTGCCAGCTCCAACCTTCAACATATCTCAACTGCAGCAGAGCTTCTCTCAGAGAGGTCTGTCCTTGAATGACCTGGTGGCTCTTTCAGGTAAACTAACTTCAATATCCCAATTGCAATTGCAATTGCTATTTCATATTTTTCATTTATCTCAAGAAGAAATGGAGAGCTTAACTATTGAAACATCTGCAGGAGGTCACACTCTAGGGTTCTCTCACTGCTCATCTTTCCAAAACAGAATCCACAACTTCAATGCCACACACGACGTCGATCCTTCACTGCGACCATCCTTTGCAGCAAGCTTAAAGAATACATGTCCCATCAATAACAGGCCAAAAAACGCTGGCGCCACCATGGATCCTTCTTCAACAACTTTTGATAACGCATACTACAAGTTGATCCTCCAGGGGAAGAGCTTGTTTTCTTCAGACCAAGCTCTGCTTAGTTTTCCAAAGACCAAAAATTTGGTTACTAAGTTTGCTACTTCAAAGGAAGCTTTCTTAGATGCTTTTGTGAATTCTATGATTAAGATGAGTAGCATTACAGGTGGACAAGAGGTCAGGAAAGACTGCAGGATAGTAAATTAA

Protein Analysis

353

Amino Acids

38.18

Weight (kDa)

8.85

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42180
fragaria_vesca FvH4_1g11220
malus_domestica MD02G1124700.v1.1 MD15G1238800.v1.1
prunus_persica Prupe.7G173700_v2.0.a1 Prupe.7G173700_v2.0.a1
pyrus_communis pycom02g09740
rosa_chinensis RchiOBHm_Chr2g0098631
rosa_laevigata RLG00000016819
rosa_multiflora Rmu_sc0002776.1_g000019
rosa_roxburghii Rroxscaffold_2G00143830
rosa_rugosa Rorug02G0073800
rosa_samantha Rh2AG121600 Rh2BG125100 Rh2CG126100 Rh2DG127200
rosa_wichuraiana Rw0G004160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AatII GACGTC 1 cut(s) 741
AccB1I GGYRCC 1 cut(s) 818
AciI CCGC 2 cut(s) 69, 143
AclI AACGTT 1 cut(s) 108
AclWI GGATC 4 cut(s) 737, 824, 837, 865
AcsI RAATTY 3 cut(s) 235, 934, 988
AcuI CTGAAG 1 cut(s) 882
AcyI GRCGYC 2 cut(s) 738, 819
AfiI CCNNNNNNNGG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 785
AgsI TTSAA 8 cut(s) 126, 493, 541, 576, 653, 724, 840, 960
AhdI GACNNNNNGTC 1 cut(s) 1028
AjnI CCWGG 3 cut(s) 340, 546, 876
Alw21I GWGCWC 2 cut(s) 29, 80
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 4 cut(s) 737, 824, 837, 865
AoxI GGCC 3 cut(s) 3, 269, 803
ApeKI GCWGC 5 cut(s) 146, 170, 377, 508, 767
ApoI RAATTY 3 cut(s) 235, 934, 988
ArsI GACNNNNNNTTYG 2 cut(s) 919, 951
AspLEI GCGC 1 cut(s) 821
AspS9I GGNCC 2 cut(s) 269, 407
AsuC2I CCSGG 2 cut(s) 59, 167
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 407
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 1 cut(s) 818
BanII GRGCYC 2 cut(s) 29, 80
BarI GAAGNNNNNNTAC 2 cut(s) 556, 588
Bbv12I GWGCWC 2 cut(s) 29, 80
BbvI GCAGC 5 cut(s) 157, 158, 364, 520, 779
BccI CCATC 4 cut(s) 260, 434, 766, 800
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 3 cut(s) 342, 548, 878
BcnI CCSGG 2 cut(s) 59, 167
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 2 cut(s) 374, 677
BfmI CTRYAG 3 cut(s) 506, 660, 1042
BfoI RGCGCY 1 cut(s) 822
BisI GCNGC 6 cut(s) 144, 147, 171, 378, 509, 768
BlsI GCNGC 6 cut(s) 145, 148, 172, 379, 510, 769
Bme1390I CCNGG 5 cut(s) 59, 167, 342, 548, 878
Bme18I GGWCC 1 cut(s) 407
BmeRI GACNNNNNGTC 1 cut(s) 1028
BmgT120I GGNCC 2 cut(s) 269, 407
BmiI GGNNCC 2 cut(s) 820, 831
BmrFI CCNGG 5 cut(s) 59, 167, 342, 548, 878
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 4 cut(s) 174, 208, 376, 967
BmuI ACTGGG 1 cut(s) 424
BplI GAGNNNNNCTC 2 cut(s) 505, 537
BpmI CTGGAG 2 cut(s) 423, 860
Bpu10I CCTNAGC 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 43, 609
BpuMI CCSGG 2 cut(s) 59, 167
BsaHI GRCGYC 2 cut(s) 738, 819
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 4 cut(s) 57, 340, 825, 877
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 419
BseBI CCWGG 3 cut(s) 342, 548, 878
BseDI CCNNGG 4 cut(s) 57, 340, 825, 877
BseGI GGATG 5 cut(s) 39, 189, 391, 424, 758
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 42, 65, 193, 536
BseNI ACTGG 1 cut(s) 419
BseXI GCAGC 5 cut(s) 157, 158, 364, 520, 779
BshFI GGCC 3 cut(s) 5, 271, 805
BshNI GGYRCC 1 cut(s) 818
BsiHKAI GWGCWC 2 cut(s) 29, 80
BsiSI CCGG 2 cut(s) 59, 167
BslFI GGGAC 2 cut(s) 149, 774
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 2 cut(s) 149, 774
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 3 cut(s) 5, 271, 805
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 29, 80
Bsp143I GATC 3 cut(s) 742, 829, 870
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 2 cut(s) 69, 143
BspANI GGCC 3 cut(s) 5, 271, 805
BspCNI CTCAG 4 cut(s) 41, 66, 192, 535
BspLI GGNNCC 2 cut(s) 820, 831
BspMAI CTGCAG 3 cut(s) 510, 664, 1046
BspPI GGATC 4 cut(s) 737, 824, 837, 865
BspQI GCTCTTC 1 cut(s) 878
BspT107I GGYRCC 1 cut(s) 818
BspTNI GGTCTC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 4 cut(s) 57, 340, 825, 877
BssMI GATC 3 cut(s) 742, 829, 870
BssNI GRCGYC 2 cut(s) 738, 819
BssT1I CCWWGG 1 cut(s) 825
Bst2UI CCWGG 3 cut(s) 342, 548, 878
Bst4CI ACNGT 2 cut(s) 163, 200
Bst6I CTCTTC 1 cut(s) 878
BstACI GRCGYC 2 cut(s) 738, 819
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 291, 480, 772, 817
BstDEI CTNAG 7 cut(s) 28, 74, 179, 522, 914, 945, 973
BstDSI CCRYGG 1 cut(s) 825
BstF5I GGATG 5 cut(s) 39, 189, 391, 424, 758
BstH2I RGCGCY 1 cut(s) 822
BstHHI GCGC 1 cut(s) 821
BstKTI GATC 3 cut(s) 745, 832, 873
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 3 cut(s) 742, 829, 870
BstMWI GCNNNNNNNGC 3 cut(s) 184, 377, 386
BstNI CCWGG 3 cut(s) 342, 548, 878
BstNSI RCATGY 2 cut(s) 293, 789
BstSCI CCNGG 5 cut(s) 57, 165, 340, 546, 876
BstSFI CTRYAG 3 cut(s) 506, 660, 1042
BstV1I GCAGC 5 cut(s) 157, 158, 364, 520, 779
BstX2I RGATCY 1 cut(s) 829
BstXI CCANNNNNNTGG 1 cut(s) 937
BstYI RGATCY 1 cut(s) 829
BsuRI GGCC 3 cut(s) 5, 271, 805
BtgI CCRYGG 1 cut(s) 825
BtsCI GGATG 5 cut(s) 39, 189, 391, 424, 758
BtsI GCAGTG 2 cut(s) 688, 749
BtsIMutI CAGTG 3 cut(s) 71, 688, 749
Cac8I GCNNGC 4 cut(s) 291, 480, 772, 817
CfoI GCGC 1 cut(s) 821
Cfr13I GGNCC 2 cut(s) 269, 407
CsiI ACCWGGT 1 cut(s) 546
CviAII CATG 5 cut(s) 194, 290, 354, 786, 826
DdeI CTNAG 7 cut(s) 28, 74, 179, 522, 914, 945, 973
DinI GGCGCC 1 cut(s) 820
DpnI GATC 3 cut(s) 744, 831, 872
DpnII GATC 3 cut(s) 742, 829, 870
DrdI GACNNNNNNGTC 1 cut(s) 161
DriI GACNNNNNGTC 1 cut(s) 1028
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 878
Eam1105I GACNNNNNGTC 1 cut(s) 1028
EarI CTCTTC 1 cut(s) 878
Ecl136II GAGCTC 2 cut(s) 27, 78
Eco130I CCWWGG 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 29, 80
Eco31I GGTCTC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 407
Eco53kI GAGCTC 2 cut(s) 27, 78
Eco57I CTGAAG 1 cut(s) 882
EcoICRI GAGCTC 2 cut(s) 27, 78
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 3 cut(s) 340, 546, 876
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 825
EcoT22I ATGCAT 2 cut(s) 189, 295
EcoT38I GRGCYC 2 cut(s) 29, 80
EgeI GGCGCC 1 cut(s) 820
EheI GGCGCC 1 cut(s) 820
ErhI CCWWGG 1 cut(s) 825
FaeI CATG 5 cut(s) 197, 293, 357, 789, 829
FalI AAGNNNNNCTT 2 cut(s) 897, 929
FaqI GGGAC 2 cut(s) 149, 774
FatI CATG 5 cut(s) 193, 289, 353, 785, 825
Fnu4HI GCNGC 6 cut(s) 144, 147, 171, 378, 509, 768
FokI GGATG 5 cut(s) 26, 196, 398, 431, 745
FriOI GRGCYC 2 cut(s) 29, 80
Fsp4HI GCNGC 6 cut(s) 144, 147, 171, 378, 509, 768
FspBI CTAG 2 cut(s) 374, 677
GlaI GCGC 1 cut(s) 820
GluI GCNGC 6 cut(s) 144, 147, 171, 378, 509, 768
GsuI CTGGAG 2 cut(s) 423, 860
HaeII RGCGCY 1 cut(s) 822
HaeIII GGCC 3 cut(s) 5, 271, 805
HapII CCGG 2 cut(s) 59, 167
HhaI GCGC 1 cut(s) 821
Hin1I GRCGYC 2 cut(s) 738, 819
Hin1II CATG 5 cut(s) 197, 293, 357, 789, 829
Hin6I GCGC 1 cut(s) 819
HinP1I GCGC 1 cut(s) 819
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 772, 966
HinfI GANTC 1 cut(s) 711
HpaII CCGG 2 cut(s) 59, 167
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 112, 566, 1022
Hpy188I TCNGA 2 cut(s) 525, 901
Hpy188III TCNNGA 6 cut(s) 22, 136, 181, 402, 626, 1033
Hpy8I GTNNAC 3 cut(s) 112, 566, 1022
Hpy99I CGWCG 2 cut(s) 740, 743
HpyAV CCTTC 3 cut(s) 499, 756, 843
HpyCH4III ACNGT 2 cut(s) 163, 200
HpyCH4IV ACGT 2 cut(s) 108, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 377, 386
HpyF3I CTNAG 7 cut(s) 28, 74, 179, 522, 914, 945, 973
HpySE526I ACGT 2 cut(s) 108, 738
Hsp92I GRCGYC 2 cut(s) 738, 819
Hsp92II CATG 5 cut(s) 197, 293, 357, 789, 829
HspAI GCGC 1 cut(s) 819
KasI GGCGCC 1 cut(s) 818
Kzo9I GATC 3 cut(s) 742, 829, 870
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 2 cut(s) 246, 487
Lsp1109I GCAGC 5 cut(s) 157, 158, 364, 520, 779
LweI GCATC 4 cut(s) 174, 208, 376, 967
MabI ACCWGGT 1 cut(s) 546
MaeI CTAG 2 cut(s) 374, 677
MaeII ACGT 2 cut(s) 108, 738
MaeIII GTNAC 2 cut(s) 668, 940
MalI GATC 3 cut(s) 744, 831, 872
MboI GATC 3 cut(s) 742, 829, 870
MboII GAAGA 6 cut(s) 444, 456, 641, 828, 888, 895
MfeI CAATTG 4 cut(s) 473, 584, 590, 596
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 2 cut(s) 29, 80
MluCI AATT 9 cut(s) 82, 235, 473, 584, 590, 596, 934, 988, 1054
Mly113I GGCGCC 1 cut(s) 819
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 8 cut(s) 44, 232, 322, 398, 521, 659, 884, 1021
Mph1103I ATGCAT 2 cut(s) 189, 295
MseI TTAA 6 cut(s) 9, 233, 644, 776, 999, 1057
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 2 cut(s) 59, 167
MspR9I CCNGG 5 cut(s) 59, 167, 342, 548, 878
MunI CAATTG 4 cut(s) 473, 584, 590, 596
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 3 cut(s) 342, 548, 878
MwoI GCNNNNNNNGC 3 cut(s) 184, 377, 386
NarI GGCGCC 1 cut(s) 819
NciI CCSGG 2 cut(s) 59, 167
NcoI CCATGG 1 cut(s) 825
NdeII GATC 3 cut(s) 742, 829, 870
NlaIII CATG 5 cut(s) 197, 293, 357, 789, 829
NlaIV GGNNCC 2 cut(s) 820, 831
NmuCI GTSAC 1 cut(s) 668
NsiI ATGCAT 2 cut(s) 189, 295
NspI RCATGY 2 cut(s) 293, 789
PaeI GCATGC 1 cut(s) 293
PciI ACATGT 1 cut(s) 785
PciSI GCTCTTC 1 cut(s) 878
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 711
PkrI GCNGC 6 cut(s) 145, 148, 172, 379, 510, 769
PluTI GGCGCC 1 cut(s) 822
PscI ACATGT 1 cut(s) 785
Psp124BI GAGCTC 2 cut(s) 29, 80
Psp1406I AACGTT 1 cut(s) 108
Psp6I CCWGG 3 cut(s) 340, 546, 876
PspGI CCWGG 3 cut(s) 340, 546, 876
PspN4I GGNNCC 2 cut(s) 820, 831
PspPI GGNCC 2 cut(s) 269, 407
PstI CTGCAG 3 cut(s) 510, 664, 1046
PsuI RGATCY 1 cut(s) 829
RseI CAYNNNNRTG 1 cut(s) 192
SacI GAGCTC 2 cut(s) 29, 80
SapI GCTCTTC 1 cut(s) 878
SaqAI TTAA 6 cut(s) 9, 233, 644, 776, 999, 1057
SatI GCNGC 6 cut(s) 144, 147, 171, 378, 509, 768
Sau3AI GATC 3 cut(s) 742, 829, 870
Sau96I GGNCC 2 cut(s) 269, 407
ScrFI CCNGG 5 cut(s) 59, 167, 342, 548, 878
SduI GDGCHC 2 cut(s) 29, 80
SexAI ACCWGGT 1 cut(s) 546
SfaNI GCATC 4 cut(s) 174, 208, 376, 967
SfcI CTRYAG 3 cut(s) 506, 660, 1042
SfoI GGCGCC 1 cut(s) 820
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 22, 624
SmoI CTYRAG 2 cut(s) 22, 624
SphI GCATGC 1 cut(s) 293
Sse9I AATT 9 cut(s) 82, 235, 473, 584, 590, 596, 934, 988, 1054
SsiI CCGC 2 cut(s) 69, 143
SspDI GGCGCC 1 cut(s) 818
SspI AATATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 374, 677
SstI GAGCTC 2 cut(s) 29, 80
StyD4I CCNGG 5 cut(s) 57, 165, 340, 546, 876
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 2 cut(s) 163, 200
TaiI ACGT 2 cut(s) 111, 741
TaqI TCGA 2 cut(s) 80, 741
TasI AATT 9 cut(s) 82, 235, 473, 584, 590, 596, 934, 988, 1054
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 711
Tru1I TTAA 6 cut(s) 9, 233, 644, 776, 999, 1057
Tru9I TTAA 6 cut(s) 9, 233, 644, 776, 999, 1057
TscAI CASTG 3 cut(s) 78, 695, 756
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 5 cut(s) 146, 170, 377, 508, 767
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 3 cut(s) 193, 596, 605
TspRI CASTG 3 cut(s) 78, 695, 756
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 3 cut(s) 235, 934, 988
XceI RCATGY 2 cut(s) 293, 789
XspI CTAG 2 cut(s) 374, 677
ZraI GACGTC 1 cut(s) 739
Zsp2I ATGCAT 2 cut(s) 189, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.