AT5G42785

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014485
Physical Location & Seq
Reverse (-)
17156853 .. 17157857
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42785.1

Sequence Viewer

Length: 348 bp
ATGAAAGGAAGGGCCTACGTAATGATCTTCTTCTTCTGGGCTCTTCTCACCATTATCACCCCAATGCTTGTTAGCTGGTCTCAATCTCTCAAAAATCTTCCACCACTCTCTAATGATCAAGAACAAAAAATCAAGGACTCTGGTCCAAGAAGAATGATGGGATATTCAGAAGAAATGCATTTGGCACAAGAGTTTGTTAGTCACGTAGAAGAAGAGAAGTTGATGATGGAGCCGTCAATGGCGCCAACGCCTGAAGATAACCATGTTATGCCTTCACTATCTTCCTTGCGGATAAAACAACAAGAAGGATTAGTCGCTAAACGGGCACATCCCATGAGATTGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.34

Weight (kDa)

8.09

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42785
malus_domestica MD08G1029300.v1.1 MD15G1024800.v1.1
prunus_persica Prupe.1G377200_v2.0.a1
pyrus_communis pycom08g02310 pycom15g02130
rosa_chinensis RchiOBHm_Chr6g0301311
rosa_laevigata RLG00000011260
rosa_multiflora Rmu_sc0003197.1_g000009 Rmu_sc0013354.1_g000019
rosa_roxburghii Rroxscaffold_7G00166930
rosa_rugosa Rorug06G0303300
rosa_samantha Rh6AG417100 Rh6BG423700 Rh6CG430900 Rh6DG416800
rosa_wichuraiana Rw6G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AciI CCGC 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 242
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 12, 143
AsuHPI GGTGA 2 cut(s) 40, 49
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 43
BccI CCATC 2 cut(s) 151, 220
BceAI ACGGC 1 cut(s) 217
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 12, 143
BmiI GGNNCC 2 cut(s) 231, 243
BoxI GACNNNNGTC 1 cut(s) 141
BsaAI YACGTR 2 cut(s) 19, 205
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 84
BseGI GGATG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 328
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 43, 328
Bsp143I GATC 2 cut(s) 24, 115
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 231, 243
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 84
BssMI GATC 2 cut(s) 24, 115
BssNI GRCGYC 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 48, 207
BstACI GRCGYC 1 cut(s) 242
BstBAI YACGTR 2 cut(s) 19, 205
BstF5I GGATG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 27, 118
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 24, 115
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 328
BstSNI TACGTA 1 cut(s) 19
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 328
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 12, 143
CviAII CATG 2 cut(s) 263, 334
CviJI RGCY 4 cut(s) 14, 41, 75, 232
CviKI_1 RGCY 4 cut(s) 14, 41, 75, 232
DinI GGCGCC 1 cut(s) 243
DpnI GATC 2 cut(s) 26, 117
DpnII GATC 2 cut(s) 24, 115
Eam1104I CTCTTC 2 cut(s) 48, 207
EarI CTCTTC 2 cut(s) 48, 207
Eco105I TACGTA 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 43
EgeI GGCGCC 1 cut(s) 243
EheI GGCGCC 1 cut(s) 243
FaeI CATG 2 cut(s) 266, 337
FaiI YATR 3 cut(s) 264, 269, 335
FatI CATG 2 cut(s) 262, 333
FbaI TGATCA 1 cut(s) 115
FokI GGATG 1 cut(s) 315
FriOI GRGCYC 1 cut(s) 43
GlaI GCGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 14
HhaI GCGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 2 cut(s) 266, 337
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 1 cut(s) 137
HphI GGTGA 2 cut(s) 40, 49
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 3, 282, 299
HpyCH4IV ACGT 2 cut(s) 18, 204
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpySE526I ACGT 2 cut(s) 18, 204
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 266, 337
HspAI GCGC 1 cut(s) 242
KasI GGCGCC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 24, 115
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 22, 61, 126, 264
MaeII ACGT 2 cut(s) 18, 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 26, 117
MboI GATC 2 cut(s) 24, 115
MhlI GDGCHC 2 cut(s) 43, 328
Mly113I GGCGCC 1 cut(s) 242
MlyI GAGTC 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 323
NarI GGCGCC 1 cut(s) 242
NdeII GATC 2 cut(s) 24, 115
NlaIII CATG 2 cut(s) 266, 337
NlaIV GGNNCC 2 cut(s) 231, 243
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 48
PleI GAGTC 1 cut(s) 131
PluTI GGCGCC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 131
Ppu21I YACGTR 2 cut(s) 19, 205
PshAI GACNNNNGTC 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 231, 243
PspPI GGNCC 2 cut(s) 12, 143
RseI CAYNNNNRTG 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 24, 115
Sau96I GGNCC 2 cut(s) 12, 143
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 2 cut(s) 43, 328
SetI ASST 3 cut(s) 21, 77, 207
SfoI GGCGCC 1 cut(s) 243
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 62
SnaBI TACGTA 1 cut(s) 19
SsiI CCGC 1 cut(s) 289
SspDI GGCGCC 1 cut(s) 241
TaiI ACGT 2 cut(s) 21, 207
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.