Rmu_sc0003197.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003197.1
Physical Location & Seq
Reverse (-)
26696 .. 27137
442 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003197.1_g000009.1.cds

Sequence Viewer

Length: 330 bp
atgagtgggagaatttatgttgtgatattcttctgctgggctgcccttactatcatcacccccacgctcattttcttgtcggagacttcgaaaccctactccgaattacaagatgagggaagtgaaggaatcaaggctagaagattgataggatatgctgtgaaacatcgaatgagcacaacaactgcacaagattcttcaccttcacctgcaccggcaccaactccaatttcagagtcaggtttggggattagtccaatcgatcttgcaaaagtcttctcggaatcattgagaatggtgatcagaaagactaaactccggttgacgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.94

Weight (kDa)

9.51

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014485)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 12
AjiI CACGTC 1 cut(s) 327
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 49, 192, 198, 310
AsuII TTCGAA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 268
Bpu14I TTCGAA 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 318
Bse118I RCCGGY 1 cut(s) 214
BseCI ATCGAT 1 cut(s) 261
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 2 cut(s) 171, 195
BshNI GGYRCC 1 cut(s) 217
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 215, 319
BsmAI GTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 262, 300
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 217
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssMI GATC 2 cut(s) 262, 300
BstBI TTCGAA 1 cut(s) 89
BstKTI GATC 2 cut(s) 265, 303
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 262, 300
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 261
BtrI CACGTC 1 cut(s) 327
BveI ACCTGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 261
CviJI RGCY 2 cut(s) 41, 137
CviKI_1 RGCY 2 cut(s) 41, 137
DpnI GATC 2 cut(s) 264, 302
DpnII GATC 2 cut(s) 262, 300
FaiI YATR 2 cut(s) 18, 156
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 40
HapII CCGG 2 cut(s) 215, 319
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 4 cut(s) 129, 194, 236, 284
HpaII CCGG 2 cut(s) 215, 319
HphI GGTGA 4 cut(s) 49, 192, 198, 310
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 5 cut(s) 82, 103, 235, 283, 305
Hpy8I GTNNAC 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 119, 213
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 188, 212, 269
HpySE526I ACGT 1 cut(s) 326
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 2 cut(s) 262, 300
LpnPI CCDG 4 cut(s) 22, 222, 225, 228
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 326
MalI GATC 2 cut(s) 264, 302
MboI GATC 2 cut(s) 262, 300
MboII GAAGA 4 cut(s) 22, 153, 189, 268
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 12, 104, 228
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 109
MspI CCGG 2 cut(s) 215, 319
NdeII GATC 2 cut(s) 262, 300
NlaIV GGNNCC 1 cut(s) 219
NspV TTCGAA 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 3 cut(s) 129, 194, 284
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 219
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 262, 300
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 179
SetI ASST 4 cut(s) 205, 211, 244, 329
SfuI TTCGAA 1 cut(s) 89
Sse9I AATT 3 cut(s) 12, 104, 228
SspMI CTAG 1 cut(s) 138
TaiI ACGT 1 cut(s) 329
TaqI TCGA 3 cut(s) 89, 169, 261
TasI AATT 3 cut(s) 12, 104, 228
TfiI GAWTC 3 cut(s) 129, 194, 284
TseI GCWGC 1 cut(s) 41
XapI RAATTY 1 cut(s) 12
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.