MD08G1029300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0014485
Physical Location & Seq
Forward (+)
2125540 .. 2126817
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1029300.v1.1.491

Sequence Viewer

Length: 348 bp
ATGAGTGGGAGAACTCATGTTGTGATATTCTTCTTCTGGGCTGCTCTTACTGTCATCACCCCCACACTTGTTTTTCTTTCAGAGACTTCCAAACCGTACTTGGATTCAAATGGTGAGGAAATTGAAGGAACCAAGGGAAGAAGACTGATTGGAATCGTAGGATATGAATCACAACGTCAACCACAAGTTCTGCCAACTACAGCAGCCCCTACAGCATCACCATCACTGGCGCAAGCTCCAGTTTCGGAACTAAAACCAGGTTTGAAGCATGGAGAAACCAGTATTGTAAAGGTCTTTATAGAGTCATTGAAATTTGTGATCAACAATACTAAGTTCAAGTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

9.4

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42785
malus_domestica MD08G1029300.v1.1 MD15G1024800.v1.1
prunus_persica Prupe.1G377200_v2.0.a1
pyrus_communis pycom08g02310 pycom15g02130
rosa_chinensis RchiOBHm_Chr6g0301311
rosa_laevigata RLG00000011260
rosa_multiflora Rmu_sc0003197.1_g000009 Rmu_sc0013354.1_g000019
rosa_roxburghii Rroxscaffold_7G00166930
rosa_rugosa Rorug06G0303300
rosa_samantha Rh6AG417100 Rh6BG423700 Rh6CG430900 Rh6DG416800
rosa_wichuraiana Rw6G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 5 cut(s) 108, 125, 265, 310, 337
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 41, 203
ApoI RAATTY 1 cut(s) 311
AspLEI GCGC 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 49, 125, 210
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 28, 215
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 77
BfmI CTRYAG 2 cut(s) 198, 210
BisI GCNGC 2 cut(s) 42, 204
BlsI GCNGC 2 cut(s) 43, 205
Bme1390I CCNGG 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 222
BsaBI GATNNNNATC 2 cut(s) 152, 166
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 3 cut(s) 231, 239, 279
Bse8I GATNNNNATC 2 cut(s) 152, 166
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 132
BseJI GATNNNNATC 2 cut(s) 152, 166
BseNI ACTGG 3 cut(s) 231, 239, 279
BseXI GCAGC 2 cut(s) 28, 215
BsmAI GTCTC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 130
BsrI ACTGG 3 cut(s) 231, 239, 279
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 52, 96
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 330
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 198, 210
BstV1I GCAGC 2 cut(s) 28, 215
BstV2I GAAGAC 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 232
CsiI ACCWGGT 1 cut(s) 256
Csp6I GTAC 1 cut(s) 97
CviAII CATG 2 cut(s) 17, 269
CviJI RGCY 3 cut(s) 41, 206, 236
CviKI_1 RGCY 3 cut(s) 41, 206, 236
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 20, 272
FaiI YATR 4 cut(s) 18, 165, 270, 299
FatI CATG 2 cut(s) 16, 268
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 42, 204
Fsp4HI GCNGC 2 cut(s) 42, 204
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 42, 204
GsuI CTGGAG 1 cut(s) 222
HhaI GCGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 20, 272
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 4 cut(s) 104, 153, 167, 302
HphI GGTGA 3 cut(s) 49, 125, 210
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 82, 247
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 52, 96
HpyCH4IV ACGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 2 cut(s) 20, 272
HspAI GCGC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 6 cut(s) 22, 212, 243, 252, 270, 292
Lsp1109I GCAGC 2 cut(s) 28, 215
LweI GCATC 1 cut(s) 224
MabI ACCWGGT 1 cut(s) 256
MaeII ACGT 1 cut(s) 175
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 4 cut(s) 22, 25, 150, 153
MluCI AATT 3 cut(s) 120, 311, 343
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 1 cut(s) 109
MseI TTAA 2 cut(s) 341, 346
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 318
NlaIII CATG 2 cut(s) 20, 272
NlaIV GGNNCC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 104, 153, 167
PkrI GCNGC 2 cut(s) 43, 205
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 130
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 341, 346
SatI GCNGC 2 cut(s) 42, 204
Sau3AI GATC 1 cut(s) 318
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 258
SetI ASST 4 cut(s) 178, 238, 262, 294
SexAI ACCWGGT 1 cut(s) 256
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 2 cut(s) 198, 210
Sse9I AATT 3 cut(s) 120, 311, 343
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 52, 96
TaiI ACGT 1 cut(s) 178
TasI AATT 3 cut(s) 120, 311, 343
TfiI GAWTC 3 cut(s) 104, 153, 167
Tru1I TTAA 2 cut(s) 341, 346
Tru9I TTAA 2 cut(s) 341, 346
TscAI CASTG 1 cut(s) 231
TseI GCWGC 2 cut(s) 41, 203
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.