Rroxscaffold_7G00166930

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
8257263 .. 8257710
448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166930.1

Sequence Viewer

Length: 336 bp
ATGAGTGGGAGAATTTATGTTGTGATATTCTTCTGCTGGGCTGCCCTTACTATCATCACCCCCACGCTCATTTTCTTGTCGGAGACTTCCAAACCCTACTCGGAATTACAAGATGAGGGAAGTGAAGGAATCAAGGCTAGAAGATTGATAGGATATGCTGTGAAACATCGAATGAGCACAACAACAGCACAAGATTCTTCACCTTCACCTTCACCTGCACCGGCACCAACTCCAATTTCAGAGTCAGGTTCGGGGATTAGTCCAATCGATCTTGCAAAAGTCTTCTCGGAATCATTGAGAATGGTGATCAGAAAGACTAAACTCCGGTTGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.1

Weight (kDa)

9.51

Isoelectric Point (pI)

72.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014485)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 12
AjiI CACGTC 1 cut(s) 333
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 5 cut(s) 49, 192, 198, 204, 316
BanI GGYRCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 274
Bsa29I ATCGAT 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 324
Bse118I RCCGGY 1 cut(s) 220
BseCI ATCGAT 1 cut(s) 267
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 221, 325
BsmAI GTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 268, 306
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssMI GATC 2 cut(s) 268, 306
BstKTI GATC 2 cut(s) 271, 309
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 268, 306
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 267
BtrI CACGTC 1 cut(s) 333
BveI ACCTGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 267
CviJI RGCY 2 cut(s) 41, 137
CviKI_1 RGCY 2 cut(s) 41, 137
DpnI GATC 2 cut(s) 270, 308
DpnII GATC 2 cut(s) 268, 306
FaiI YATR 2 cut(s) 18, 156
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 40
HapII CCGG 2 cut(s) 221, 325
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 4 cut(s) 129, 194, 242, 290
HpaII CCGG 2 cut(s) 221, 325
HphI GGTGA 5 cut(s) 49, 192, 198, 204, 316
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 5 cut(s) 82, 103, 241, 289, 311
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 119, 213, 219
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 218, 275
HpySE526I ACGT 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 268, 306
LpnPI CCDG 4 cut(s) 22, 228, 231, 234
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 332
MalI GATC 2 cut(s) 270, 308
MboI GATC 2 cut(s) 268, 306
MboII GAAGA 4 cut(s) 22, 153, 189, 274
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 12, 104, 234
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 109
MspI CCGG 2 cut(s) 221, 325
NdeII GATC 2 cut(s) 268, 306
NlaIV GGNNCC 1 cut(s) 225
PaqCI CACCTGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 129, 194, 290
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 225
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 268, 306
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 179
SetI ASST 5 cut(s) 205, 211, 217, 250, 335
Sse9I AATT 3 cut(s) 12, 104, 234
SspMI CTAG 1 cut(s) 138
TaiI ACGT 1 cut(s) 335
TaqI TCGA 2 cut(s) 169, 267
TasI AATT 3 cut(s) 12, 104, 234
TfiI GAWTC 3 cut(s) 129, 194, 290
TseI GCWGC 1 cut(s) 41
XapI RAATTY 1 cut(s) 12
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.