Rw6G036090

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
60659835 .. 60660275
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036090.1

Sequence Viewer

Length: 249 bp
ATGAGTGGGAGAATTTATGTTGTGATATTCTTCTGCTGGGCTGCCCTTACTATCATCACCCCCACGCTCATTTTCTTGTCGGAGACTTCGAAACCCTACTCGGAATTACAAGATTCTTCACCTTCACCTGCACCGGCACCAACTCCAATTTCAGAGTCAGGTTCGGGGATTAGTCCAATCGATCTTGCAAAAGTCTTCTCGGAATCATTGAGAATGGTGATCAGAAAGACTAAACTCCGGTTGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.96

Weight (kDa)

8.98

Isoelectric Point (pI)

69.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014485)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 12
AjiI CACGTC 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 49, 111, 117, 229
AsuII TTCGAA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 237
Bse118I RCCGGY 1 cut(s) 133
BseCI ATCGAT 1 cut(s) 180
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 180
BsiSI CCGG 2 cut(s) 134, 238
BsmAI GTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 2 cut(s) 181, 219
BspDI ATCGAT 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssMI GATC 2 cut(s) 181, 219
BstBI TTCGAA 1 cut(s) 89
BstKTI GATC 2 cut(s) 184, 222
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 181, 219
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 180
BtrI CACGTC 1 cut(s) 246
BveI ACCTGC 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 180
CviJI RGCY 1 cut(s) 41
CviKI_1 RGCY 1 cut(s) 41
DpnI GATC 2 cut(s) 183, 221
DpnII GATC 2 cut(s) 181, 219
FaiI YATR 1 cut(s) 18
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 40
HapII CCGG 2 cut(s) 134, 238
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 3 cut(s) 113, 155, 203
HpaII CCGG 2 cut(s) 134, 238
HphI GGTGA 4 cut(s) 49, 111, 117, 229
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 5 cut(s) 82, 103, 154, 202, 224
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 131, 188
HpySE526I ACGT 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 2 cut(s) 181, 219
LpnPI CCDG 4 cut(s) 22, 141, 144, 147
Lsp1109I GCAGC 1 cut(s) 28
MaeII ACGT 1 cut(s) 245
MalI GATC 2 cut(s) 183, 221
MboI GATC 2 cut(s) 181, 219
MboII GAAGA 3 cut(s) 22, 108, 187
MluCI AATT 3 cut(s) 12, 104, 147
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 60
MspI CCGG 2 cut(s) 134, 238
NdeII GATC 2 cut(s) 181, 219
NlaIV GGNNCC 1 cut(s) 138
NspV TTCGAA 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 2 cut(s) 113, 203
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 138
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 181, 219
SchI GAGTC 1 cut(s) 164
SetI ASST 4 cut(s) 124, 130, 163, 248
SfuI TTCGAA 1 cut(s) 89
Sse9I AATT 3 cut(s) 12, 104, 147
TaiI ACGT 1 cut(s) 248
TaqI TCGA 2 cut(s) 89, 180
TasI AATT 3 cut(s) 12, 104, 147
TfiI GAWTC 2 cut(s) 113, 203
TseI GCWGC 1 cut(s) 41
XapI RAATTY 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.