pycom15g02130

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
1261529 .. 1261975
447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02130.1

Sequence Viewer

Length: 354 bp
ATGAGTGGGAGAACCTATGTTGTGATATTCTTCTTCTGGGCTGCTCTTACTGTCATCACCCCGACACTCGTTTTTCTTTCGGAGACTTCCAAACCCTACTTGGACTCGAATGGTGAGCAAGTTGAAGGAACCAAAGGTAGAAGACTGATTGGAATCATAGGATATGAAGCACAGCGTCGACCAAGAGTTCTGCCGACTACAGAAGCCCCTGCAGCATCACCATCACCGTCACCGGCACAAGCTCCAGTTTCAGAACTAAAACCAGGTTTGGAGCGTGGAGAAACCAGTCTTGGAAAGGTCTTTTTAGAGTCATTGAGATTTGTGATCAACAATACTAAGTTCAAGTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.86

Weight (kDa)

9.69

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014485)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 178
AgsI TTSAA 2 cut(s) 125, 343
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 41, 212
AsuHPI GGTGA 5 cut(s) 49, 125, 210, 216, 222
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 28, 224
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 77
BfmI CTRYAG 2 cut(s) 198, 210
BisI GCNGC 2 cut(s) 42, 213
BlsI GCNGC 2 cut(s) 43, 214
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 245, 285
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 152
BseNI ACTGG 2 cut(s) 245, 285
BseXI GCAGC 2 cut(s) 28, 224
BsiSI CCGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 2 cut(s) 245, 285
BssAI RCCGGY 1 cut(s) 232
BssMI GATC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 52, 228
BstDEI CTNAG 1 cut(s) 336
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 2 cut(s) 198, 210
BstV1I GCAGC 2 cut(s) 28, 224
BstV2I GAAGAC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 232
CseI GACGC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 262
CviJI RGCY 3 cut(s) 41, 206, 242
CviKI_1 RGCY 3 cut(s) 41, 206, 242
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 262
FaiI YATR 3 cut(s) 18, 158, 165
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 42, 213
Fsp4HI GCNGC 2 cut(s) 42, 213
GluI GCNGC 2 cut(s) 42, 213
GsuI CTGGAG 1 cut(s) 228
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 164
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 3 cut(s) 104, 153, 308
HpaII CCGG 1 cut(s) 233
HphI GGTGA 5 cut(s) 49, 125, 210, 216, 222
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 82, 253
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 52, 228
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 247, 271
LpnPI CCDG 7 cut(s) 22, 222, 246, 249, 258, 276, 298
Lsp1109I GCAGC 2 cut(s) 28, 224
LweI GCATC 1 cut(s) 224
MabI ACCWGGT 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 228
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 3 cut(s) 22, 25, 153
MluCI AATT 1 cut(s) 349
MlyI GAGTC 2 cut(s) 98, 317
MseI TTAA 2 cut(s) 347, 352
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 2 cut(s) 43, 214
PleI GAGTC 2 cut(s) 98, 316
PpsI GAGTC 2 cut(s) 98, 316
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 214
SalI GTCGAC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 347, 352
SatI GCNGC 2 cut(s) 42, 213
Sau3AI GATC 1 cut(s) 324
SchI GAGTC 2 cut(s) 98, 317
ScrFI CCNGG 1 cut(s) 264
SetI ASST 5 cut(s) 17, 139, 244, 268, 300
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 2 cut(s) 198, 210
Sse9I AATT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 52, 228
TaqI TCGA 2 cut(s) 107, 178
TasI AATT 1 cut(s) 349
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 347, 352
Tru9I TTAA 2 cut(s) 347, 352
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 2 cut(s) 41, 212
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.