Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010657

Physical Location & Seq

Genomic Coordinates Reverse (-)

17859136 .. 17861150

Gene Structure 2015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAGAGAGATCCTTCATATCCAAGGCGGTCAATGTGGAAACCAGATCGGAGCAAAGTTCTGGGAAGTGATCTGCGACGAACACGGCATTGATCACACCGGTCAATACGTCGGCGATTCTCCGTTACAGCTTGAACGTATCGATGTCTATTTCAACGAAGCTAGCGGTGGAAAGTACGTTCCTCGCGCTGTTCTTATGGATCTGGAGCCTGGTACCATGGATTCTCTCAGATCTGGTCCGTTCGGTCAGATTTTCCGTCCTGATAACTTCGTCTTTGGTCAATCTGGTGCCGGAAATAACTGGGCGAAAGGTCATTACACCGAAGGTGCTGAGTTGATTGATTCTGTTCTCGATGTTGTGAGGAAGGAAGCTGAGAACAGCGATTGTCTTCAAGGTTTCCAAGTGTGTCATTCATTGGGAGGAGGAACTGGATCTGGAATGGGAACTCTATTGATTTCTAAGATAAGAGAAGAGTATCCAGATCGTATGATGATGACTTTCTCAGTGTTTCCTTCTCCTAAGGTCTCTGACACTGTTGTTGAGCCATACAATGCAACTCTCTCTGTGCATCAGCTTGTCGAAAACGCTGACGAGTGTATGGTTTTGGACAATGAGGCTCTCTACGATATCTGTTTCCGTACCCTCAAGCTCGCTAATCCTACCTTTGGTGATCTTAACCATCTCATCTCTGCTACAATGAGTGGTGTCACTTGCTGTCTTCGTTTCCCTGGCCAGCTTAACTCTGACCTTAGGAAACTCGCTGTGAACCTTATCCCATTCCCAAGGCTTCACTTCTTCATGGTTGGTTTCGCACCATTGACATCGAGAGGATCACAGCAATACAGTGCCTTGAGTGTTCCTGAACTGACCCAGCAGATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTCGTCATGGACGTTACTTGACTGCATCCGCTGTGTTCCGTGGAAAGCTGAGCACCAAAGAGGTTGACGAGCAGATGATGAACATTCAGAACAAGAACTCATCCTACTTTGTGGAATGGATCCCAAACAACGTCAAGTCCAGTGTCTGTGATATTGCACCAAAGGGTTTGAAAATGGCGTCTACTTTCATTGGTAACTCAACCTCAATCCAGGAGATGTTTAGGCGTGTGAGCGAACAGTTCACAGCTATGTTCAGGAGAAAGGCTTTCCTTCATTGGTACACAGGAGAAGGCATGGACGAGATGGAGTTCACTGAAGCAGAGAGTAACATGAATGATCTTGTCGCAGAGTACCAGCAGTACCAAGATGCTACAGCCGGAGAGGAAGAGTACGAGGAGGAAGAAGAGGAGTACGAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005198 GO:0005200 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045298 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

444

Amino Acids

49.82

Weight (kDa)

4.76

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	3 - 211	4.9e-64	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	261 - 382	1.6e-39	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20890 AT5G44340
fragaria_vesca	FvH4_3g10680
malus_domestica	MD05G1269400.v1.1
prunus_persica	Prupe.4G095300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0017391
rosa_laevigata	RLG00000031997 RLG00000032281 RLG00000033381
rosa_multiflora	Rmu_sc0005319.1_g000001 Rmu_sc0010664.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059990
rosa_rugosa	Rorug05G0034800
rosa_samantha	Rh4AG140500 Rh4CG147400 Rh5AG102500 Rh5BG127700 Rh5CG110900
rosa_wichuraiana	Rw5G008950 Rw5G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	2 cut(s)	212, 287
AccI	GTMKAC	1 cut(s)	1094
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	27, 165, 942
AclWI	GGATC	6 cut(s)	4, 207, 439, 838, 1027, 1040
AcoI	YGGCCR	1 cut(s)	730
AcuI	CTGAAG	1 cut(s)	1248
AcyI	GRCGYC	1 cut(s)	1091
AfaI	GTAC	8 cut(s)	176, 214, 640, 1193, 1265, 1274, 1304, 1325
AfiI	CCNNNNNNNGG	2 cut(s)	665, 920
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	134, 154, 392, 1084
AjnI	CCWGG	3 cut(s)	208, 727, 1122
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	8 cut(s)	130, 161, 371, 574, 649, 736, 961, 1160
AluI	AGCT	8 cut(s)	130, 161, 371, 574, 649, 736, 961, 1160
Alw21I	GWGCWC	1 cut(s)	968
Alw26I	GTCTC	2 cut(s)	529, 1322
AlwI	GGATC	6 cut(s)	4, 207, 439, 838, 1027, 1040
AlwNI	CAGNNNCTG	1 cut(s)	1059
AoxI	GGCC	1 cut(s)	730
ApeKI	GCWGC	1 cut(s)	905
AsiGI	ACCGGT	1 cut(s)	98
Asp718I	GGTACC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	680
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	236
AxyI	CCTNAGG	2 cut(s)	519, 749
BalI	TGGCCA	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	1032
BanI	GGYRCC	2 cut(s)	212, 287
BbsI	GAAGAC	2 cut(s)	380, 710
Bbv12I	GWGCWC	1 cut(s)	968
BbvI	GCAGC	1 cut(s)	892
BccI	CCATC	2 cut(s)	687, 1210
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	3 cut(s)	210, 729, 1124
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	529, 1322
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	1284
BfuI	GTATCC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	1 cut(s)	906
BlpI	GCTNAGC	1 cut(s)	962
BlsI	GCNGC	1 cut(s)	907
Bme1390I	CCNGG	3 cut(s)	210, 729, 1124
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	4 cut(s)	207, 214, 289, 1034
BmrFI	CCNGG	3 cut(s)	210, 729, 1124
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	4 cut(s)	577, 874, 947, 1270
BmtI	GCTAGC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	310
BoxI	GACNNNNGTC	1 cut(s)	915
BpiI	GAAGAC	2 cut(s)	380, 710
BpmI	CTGGAG	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	962
BpuEI	CTTGAG	2 cut(s)	629, 871
Bsa29I	ATCGAT	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	1091
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	5 cut(s)	22, 216, 727, 782, 952
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	665, 920
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	305, 433, 1053
Bse21I	CCTNAGG	2 cut(s)	519, 749
BseBI	CCWGG	3 cut(s)	210, 729, 1124
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	5 cut(s)	22, 216, 727, 782, 952
BseGI	GGATG	3 cut(s)	889, 938, 1013
BseLI	CCNNNNNNNGG	2 cut(s)	665, 920
BseMII	CTCAG	5 cut(s)	241, 321, 363, 516, 953
BseNI	ACTGG	3 cut(s)	305, 433, 1053
BseRI	GAGGAG	3 cut(s)	435, 1322, 1334
BseXI	GCAGC	1 cut(s)	892
BseYI	CCCAGC	1 cut(s)	870
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	732
BshNI	GGYRCC	2 cut(s)	212, 287
BshTI	ACCGGT	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	968
BsiSI	CCGG	3 cut(s)	99, 291, 1290
BslI	CCNNNNNNNGG	2 cut(s)	665, 920
BsmAI	GTCTC	2 cut(s)	529, 1322
BsnI	GGCC	1 cut(s)	732
Bso31I	GGTCTC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp1720I	GCTNAGC	1 cut(s)	962
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	27, 165, 942
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	5 cut(s)	240, 322, 364, 515, 954
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	207, 214, 289, 1034
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	6 cut(s)	4, 207, 439, 838, 1027, 1040
BspT107I	GGYRCC	2 cut(s)	212, 287
BspTNI	GGTCTC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	305, 433, 1053
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	5 cut(s)	22, 216, 727, 782, 952
BssNI	GRCGYC	1 cut(s)	1091
BssT1I	CCWWGG	3 cut(s)	22, 216, 782
Bst2UI	CCWGG	3 cut(s)	210, 729, 1124
Bst4CI	ACNGT	3 cut(s)	535, 845, 1152
Bst6I	CTCTTC	3 cut(s)	465, 1293, 1311
BstACI	GRCGYC	1 cut(s)	1091
BstC8I	GCNNGC	3 cut(s)	163, 651, 734
BstDEI	CTNAG	8 cut(s)	227, 330, 372, 459, 502, 519, 749, 962
BstDSI	CCRYGG	2 cut(s)	216, 952
BstF5I	GGATG	3 cut(s)	889, 938, 1013
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstMAI	GTCTC	2 cut(s)	529, 1322
BstNI	CCWGG	3 cut(s)	210, 729, 1124
BstPAI	GACNNNNGTC	1 cut(s)	915
BstSCI	CCNGG	3 cut(s)	208, 727, 1122
BstSFI	CTRYAG	1 cut(s)	1284
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	892
BstV2I	GAAGAC	2 cut(s)	380, 710
BstX2I	RGATCY	5 cut(s)	9, 199, 230, 431, 1032
BstYI	RGATCY	5 cut(s)	9, 199, 230, 431, 1032
Bsu15I	ATCGAT	1 cut(s)	141
Bsu36I	CCTNAGG	2 cut(s)	519, 749
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	732
BsuTUI	ATCGAT	1 cut(s)	141
BtgI	CCRYGG	2 cut(s)	216, 952
BtsCI	GGATG	3 cut(s)	889, 938, 1013
BtsIMutI	CAGTG	5 cut(s)	510, 531, 850, 1060, 1224
Cac8I	GCNNGC	3 cut(s)	163, 651, 734
CaiI	CAGNNNCTG	1 cut(s)	1059
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	1 cut(s)	1080
Csp6I	GTAC	8 cut(s)	175, 213, 639, 1192, 1264, 1273, 1303, 1324
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	6 cut(s)	217, 799, 895, 920, 1207, 1243
CviQI	GTAC	8 cut(s)	175, 213, 639, 1192, 1264, 1273, 1303, 1324
DdeI	CTNAG	8 cut(s)	227, 330, 372, 459, 502, 519, 749, 962
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	3 cut(s)	465, 1293, 1311
EarI	CTCTTC	3 cut(s)	465, 1293, 1311
Eco130I	CCWWGG	3 cut(s)	22, 216, 782
Eco31I	GGTCTC	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	1248
Eco81I	CCTNAGG	2 cut(s)	519, 749
EcoRII	CCWGG	3 cut(s)	208, 727, 1122
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	3 cut(s)	22, 216, 782
ErhI	CCWWGG	3 cut(s)	22, 216, 782
FaeI	CATG	6 cut(s)	220, 802, 898, 923, 1210, 1246
FatI	CATG	6 cut(s)	216, 798, 894, 919, 1206, 1242
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	1094
Fnu4HI	GCNGC	1 cut(s)	906
FokI	GGATG	3 cut(s)	896, 925, 1000
Fsp4HI	GCNGC	1 cut(s)	906
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	906
GsaI	CCCAGC	1 cut(s)	874
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	3 cut(s)	99, 291, 1290
HgaI	GACGC	1 cut(s)	1080
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	1091
Hin1II	CATG	6 cut(s)	220, 802, 898, 923, 1210, 1246
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HinfI	GANTC	3 cut(s)	116, 221, 341
HpaII	CCGG	3 cut(s)	99, 291, 1290
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	6 cut(s)	766, 979, 1095, 1155, 1194, 1224
Hpy188I	TCNGA	6 cut(s)	50, 230, 249, 529, 745, 1002
Hpy188III	TCNNGA	8 cut(s)	203, 260, 350, 435, 479, 825, 860, 1168
Hpy8I	GTNNAC	6 cut(s)	766, 979, 1095, 1155, 1194, 1224
Hpy99I	CGWCG	2 cut(s)	80, 113
HpyAV	CCTTC	6 cut(s)	23, 317, 358, 522, 1193, 1196
HpyCH4III	ACNGT	3 cut(s)	535, 845, 1152
HpyCH4IV	ACGT	5 cut(s)	108, 136, 177, 925, 1044
HpyCH4V	TGCA	5 cut(s)	554, 568, 887, 938, 1070
HpyF3I	CTNAG	8 cut(s)	227, 330, 372, 459, 502, 519, 749, 962
HpySE526I	ACGT	5 cut(s)	108, 136, 177, 925, 1044
Hsp92I	GRCGYC	1 cut(s)	1091
Hsp92II	CATG	6 cut(s)	220, 802, 898, 923, 1210, 1246
HspAI	GCGC	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	50, 205
Lsp1109I	GCAGC	1 cut(s)	892
LweI	GCATC	4 cut(s)	577, 874, 947, 1270
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	5 cut(s)	108, 136, 177, 925, 1044
MaeIII	GTNAC	5 cut(s)	123, 706, 926, 1106, 1238
MboII	GAAGA	7 cut(s)	380, 482, 710, 787, 1310, 1325, 1328
MflI	RGATCY	5 cut(s)	9, 199, 230, 431, 1032
MhlI	GDGCHC	1 cut(s)	968
MlsI	TGGCCA	1 cut(s)	732
MluNI	TGGCCA	1 cut(s)	732
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	3 cut(s)	675, 738, 1333
MslI	CAYNNNNRTG	1 cut(s)	1160
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	3 cut(s)	99, 291, 1290
MspR9I	CCNGG	3 cut(s)	210, 729, 1124
MvaI	CCWGG	3 cut(s)	210, 729, 1124
MvnI	CGCG	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	216
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	6 cut(s)	220, 802, 898, 923, 1210, 1246
NlaIV	GGNNCC	4 cut(s)	207, 214, 289, 1034
NmuCI	GTSAC	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	922
PfeI	GAWTC	3 cut(s)	116, 221, 341
PfoI	TCCNGGA	1 cut(s)	1122
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	907
PshAI	GACNNNNGTC	1 cut(s)	915
Psp6I	CCWGG	3 cut(s)	208, 727, 1122
PspFI	CCCAGC	1 cut(s)	870
PspGI	CCWGG	3 cut(s)	208, 727, 1122
PspN4I	GGNNCC	4 cut(s)	207, 214, 289, 1034
PspPI	GGNCC	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	1001, 1033
PstNI	CAGNNNCTG	1 cut(s)	1059
PsuI	RGATCY	5 cut(s)	9, 199, 230, 431, 1032
RsaI	GTAC	8 cut(s)	176, 214, 640, 1193, 1265, 1274, 1304, 1325
RsaNI	GTAC	8 cut(s)	175, 213, 639, 1192, 1264, 1273, 1303, 1324
RseI	CAYNNNNRTG	1 cut(s)	1160
SaqAI	TTAA	3 cut(s)	675, 738, 1333
SatI	GCNGC	1 cut(s)	906
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	210, 729, 1124
SduI	GDGCHC	1 cut(s)	968
SfaNI	GCATC	4 cut(s)	577, 874, 947, 1270
SfcI	CTRYAG	1 cut(s)	1284
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	1160
SmlI	CTYRAG	2 cut(s)	644, 850
SmoI	CTYRAG	2 cut(s)	644, 850
SsiI	CCGC	3 cut(s)	27, 165, 942
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	208, 727, 1122
StyI	CCWWGG	3 cut(s)	22, 216, 782
TaaI	ACNGT	3 cut(s)	535, 845, 1152
TaiI	ACGT	5 cut(s)	111, 139, 180, 928, 1047
TaqI	TCGA	4 cut(s)	141, 351, 579, 824
TaqII	GACCGA	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	116, 221, 341
Tru1I	TTAA	3 cut(s)	675, 738, 1333
Tru9I	TTAA	3 cut(s)	675, 738, 1333
TscAI	CASTG	5 cut(s)	510, 538, 850, 1060, 1231
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	7 cut(s)	5, 402, 787, 1007, 1090, 1175, 1259
TspGWI	ACGGA	5 cut(s)	111, 228, 245, 626, 941
TspRI	CASTG	5 cut(s)	510, 538, 850, 1060, 1231
VpaK11BI	GGWCC	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	1094
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.