Rmu_sc0005319.1_g000001

Tubulin/FtsZ family, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005319.1
OG0010657
Physical Location & Seq
Forward (+)
1 .. 1729
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005319.1_g000001.1.cds

Sequence Viewer

Length: 944 bp
gatttcaagtatgtcattctttgggtggaggcactggctcagggatgggaactcttcttatttcgaagatcagggaggagtacccggatcggatgatgctgacattttcggtctttccttctccaaaggtgtcggacacggttgtggagccatacaatgcgaccctttccgtgcaccagcttgtagaaaatgctgatgaatgtatggttttggacaatgaggctctgtatgacatctgctttcgaactctcaagcttgccacccctacttttggtgatcttaaccacctaatctctgccacaatgagtggtgtcacatgctgtcttcggttccctggacagctgaactctgaccttcgaaagcttgcagtcaacctcattccttttccgcgtctccatttctttatggttgggtttgcacccctgacctcaagaggatcacagcagtaccgttctctgaccgtgcccgagttaacccagcagatgtgggatgccaaaaacatgatgtgtgctgctgatccacgccatggacggtaccttactgcttctgccatgttccgtggtaaaatgagcactaaagaagttgatgaacagatgattaacgtccagaacaagaactcctcatactttgttgagtggattccaaataatgtcaagtccagtgtgtgtgacatccccccaaagggtttggcaatggcttccactttcattgggaactcaacttccatccaggaaatgttcaggagggttagtgagcaattcacagctatgttcaggcgaaaggctttcttacattggtacactggggagggaatggatgagatggagttcaccgaggctgagagtaacatgaatgatctggtggctgagtaccagcaataccaggatgcaactgctgagtatgaggaggagtatgaggaggaggaagaggaggttgctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04540 ko05130 map04145 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

313

Amino Acids

35.46

Weight (kDa)

4.82

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 388
AclWI GGATC 3 cut(s) 95, 444, 511
AfaI GTAC 5 cut(s) 82, 448, 535, 799, 871
AfiI CCNNNNNNNGG 4 cut(s) 271, 526, 681, 682
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 3 cut(s) 333, 728, 881
AleI CACNNNNGTG 1 cut(s) 142
AloI GAACNNNNNNTCC 4 cut(s) 601, 633, 706, 738
AluBI AGCT 5 cut(s) 180, 255, 342, 363, 766
AluI AGCT 5 cut(s) 180, 255, 342, 363, 766
Alw21I GWGCWC 2 cut(s) 176, 574
Alw26I GTCTC 1 cut(s) 397
Alw44I GTGCAC 1 cut(s) 172
AlwI GGATC 3 cut(s) 95, 444, 511
Ama87I CYCGRG 1 cut(s) 466
ApaLI GTGCAC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 511, 937
Asp718I GGTACC 1 cut(s) 533
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 286, 822
AsuII TTCGAA 3 cut(s) 64, 243, 357
AvaI CYCGRG 1 cut(s) 466
BaeGI GKGCMC 2 cut(s) 176, 467
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BanI GGYRCC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 176, 574
BbvI GCAGC 2 cut(s) 498, 924
BccI CCATC 3 cut(s) 39, 733, 816
BciT130I CCWGG 3 cut(s) 335, 730, 883
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 397
BisI GCNGC 2 cut(s) 512, 938
BlsI GCNGC 2 cut(s) 513, 939
Bme1390I CCNGG 4 cut(s) 85, 335, 730, 883
BmeT110I CYCGRG 1 cut(s) 466
BmiI GGNNCC 3 cut(s) 149, 331, 535
BmrFI CCNGG 4 cut(s) 85, 335, 730, 883
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 3 cut(s) 86, 480, 876
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 39
Bpu14I TTCGAA 3 cut(s) 64, 243, 357
BpuEI CTTGAG 2 cut(s) 235, 414
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 4 cut(s) 333, 525, 558, 833
BsaXI ACNNNNNCTCC 4 cut(s) 601, 631, 735, 765
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 526, 681, 682
Bse1I ACTGG 3 cut(s) 39, 659, 807
Bse3DI GCAATG 1 cut(s) 698
BseBI CCWGG 3 cut(s) 335, 730, 883
BseDI CCNNGG 4 cut(s) 333, 525, 558, 833
BseGI GGATG 7 cut(s) 50, 98, 495, 671, 725, 822, 891
BseLI CCNNNNNNNGG 4 cut(s) 271, 526, 681, 682
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 4 cut(s) 53, 830, 857, 887
BseNI ACTGG 3 cut(s) 39, 659, 807
BseRI GAGGAG 7 cut(s) 91, 609, 919, 922, 931, 934, 943
BseSI GKGCMC 2 cut(s) 176, 467
BseXI GCAGC 2 cut(s) 498, 924
BseYI CCCAGC 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 533
BsiHKAI GWGCWC 2 cut(s) 176, 574
BsiHKCI CYCGRG 1 cut(s) 466
BsiSI CCGG 1 cut(s) 85
BslI CCNNNNNNNGG 4 cut(s) 271, 526, 681, 682
BsmAI GTCTC 1 cut(s) 397
BsmBI CGTCTC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 466
Bsp119I TTCGAA 3 cut(s) 64, 243, 357
Bsp1286I GDGCHC 3 cut(s) 176, 467, 574
Bsp143I GATC 6 cut(s) 68, 87, 276, 436, 516, 855
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 1 cut(s) 388
BspCNI CTCAG 4 cut(s) 52, 831, 858, 888
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 3 cut(s) 149, 331, 535
BspPI GGATC 3 cut(s) 95, 444, 511
BspT104I TTCGAA 3 cut(s) 64, 243, 357
BspT107I GGYRCC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 698
BsrI ACTGG 3 cut(s) 39, 659, 807
BssECI CCNNGG 4 cut(s) 333, 525, 558, 833
BssMI GATC 6 cut(s) 68, 87, 276, 436, 516, 855
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 3 cut(s) 335, 730, 883
Bst4CI ACNGT 4 cut(s) 141, 451, 462, 533
Bst6I CTCTTC 2 cut(s) 59, 920
BstBI TTCGAA 3 cut(s) 64, 243, 357
BstC8I GCNNGC 2 cut(s) 257, 365
BstDEI CTNAG 4 cut(s) 39, 839, 866, 896
BstDSI CCRYGG 2 cut(s) 525, 558
BstF5I GGATG 7 cut(s) 50, 98, 495, 671, 725, 822, 891
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 6 cut(s) 71, 90, 279, 439, 519, 858
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 6 cut(s) 68, 87, 276, 436, 516, 855
BstNI CCWGG 3 cut(s) 335, 730, 883
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 4 cut(s) 83, 333, 728, 881
BstSLI GKGCMC 2 cut(s) 176, 467
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 498, 924
BstV2I GAAGAC 1 cut(s) 316
BtgI CCRYGG 2 cut(s) 525, 558
BtsCI GGATG 7 cut(s) 50, 98, 495, 671, 725, 822, 891
BtsIMutI CAGTG 3 cut(s) 32, 666, 800
Cac8I GCNNGC 2 cut(s) 257, 365
CseI GACGC 1 cut(s) 379
Csp6I GTAC 5 cut(s) 81, 447, 534, 798, 870
CspCI CAANNNNNGTGG 2 cut(s) 690, 725
CviAII CATG 5 cut(s) 317, 501, 526, 552, 849
CviQI GTAC 5 cut(s) 81, 447, 534, 798, 870
DdeI CTNAG 4 cut(s) 39, 839, 866, 896
DpnI GATC 6 cut(s) 70, 89, 278, 438, 518, 857
DpnII GATC 6 cut(s) 68, 87, 276, 436, 516, 855
Eam1104I CTCTTC 2 cut(s) 59, 920
EarI CTCTTC 2 cut(s) 59, 920
Eco130I CCWWGG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 466
EcoRII CCWGG 3 cut(s) 333, 728, 881
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 5 cut(s) 320, 504, 529, 555, 852
FalI AAGNNNNNCTT 2 cut(s) 772, 804
FatI CATG 5 cut(s) 316, 500, 525, 551, 848
Fnu4HI GCNGC 2 cut(s) 512, 938
FokI GGATG 7 cut(s) 57, 105, 502, 658, 712, 829, 898
Fsp4HI GCNGC 2 cut(s) 512, 938
GluI GCNGC 2 cut(s) 512, 938
GsaI CCCAGC 1 cut(s) 480
HapII CCGG 1 cut(s) 85
HgaI GACGC 1 cut(s) 379
Hin1II CATG 5 cut(s) 320, 504, 529, 555, 852
HincII GTYRAC 2 cut(s) 372, 473
HindII GTYRAC 2 cut(s) 372, 473
HindIII AAGCTT 2 cut(s) 253, 361
HinfI GANTC 1 cut(s) 639
HpaI GTTAAC 1 cut(s) 473
HpaII CCGG 1 cut(s) 85
HphI GGTGA 2 cut(s) 286, 822
Hpy166II GTNNAC 5 cut(s) 174, 372, 473, 800, 830
Hpy188I TCNGA 4 cut(s) 92, 135, 351, 458
Hpy188III TCNNGA 3 cut(s) 431, 606, 741
Hpy8I GTNNAC 5 cut(s) 174, 372, 473, 800, 830
HpyAV CCTTC 2 cut(s) 128, 364
HpyCH4III ACNGT 4 cut(s) 141, 451, 462, 533
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 4 cut(s) 174, 367, 418, 889
HpyF3I CTNAG 4 cut(s) 39, 839, 866, 896
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 5 cut(s) 320, 504, 529, 555, 852
KpnI GGTACC 1 cut(s) 537
KspAI GTTAAC 1 cut(s) 473
Kzo9I GATC 6 cut(s) 68, 87, 276, 436, 516, 855
LmnI GCTCC 1 cut(s) 147
Lsp1109I GCAGC 2 cut(s) 498, 924
LweI GCATC 3 cut(s) 86, 480, 876
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 3 cut(s) 312, 667, 844
MalI GATC 6 cut(s) 70, 89, 278, 438, 518, 857
MboI GATC 6 cut(s) 68, 87, 276, 436, 516, 855
MboII GAAGA 4 cut(s) 46, 78, 316, 937
MhlI GDGCHC 3 cut(s) 176, 467, 574
MluCI AATT 1 cut(s) 757
MmeI TCCRAC 1 cut(s) 113
MseI TTAA 3 cut(s) 281, 472, 599
MslI CAYNNNNRTG 2 cut(s) 142, 766
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 4 cut(s) 85, 335, 730, 883
MvaI CCWGG 3 cut(s) 335, 730, 883
MvnI CGCG 1 cut(s) 390
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 525
NdeII GATC 6 cut(s) 68, 87, 276, 436, 516, 855
NlaIII CATG 5 cut(s) 320, 504, 529, 555, 852
NlaIV GGNNCC 3 cut(s) 149, 331, 535
NmuCI GTSAC 2 cut(s) 312, 667
NspI RCATGY 1 cut(s) 320
NspV TTCGAA 3 cut(s) 64, 243, 357
OliI CACNNNNGTG 1 cut(s) 142
PfeI GAWTC 1 cut(s) 639
PflMI CCANNNNNTGG 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 728
PkrI GCNGC 2 cut(s) 513, 939
Psp6I CCWGG 3 cut(s) 333, 728, 881
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 3 cut(s) 333, 728, 881
PspN4I GGNNCC 3 cut(s) 149, 331, 535
PsrI GAACNNNNNNTAC 2 cut(s) 607, 639
PvuII CAGCTG 1 cut(s) 342
RsaI GTAC 5 cut(s) 82, 448, 535, 799, 871
RsaNI GTAC 5 cut(s) 81, 447, 534, 798, 870
RseI CAYNNNNRTG 2 cut(s) 142, 766
SaqAI TTAA 3 cut(s) 281, 472, 599
SatI GCNGC 2 cut(s) 512, 938
Sau3AI GATC 6 cut(s) 68, 87, 276, 436, 516, 855
ScrFI CCNGG 4 cut(s) 85, 335, 730, 883
SduI GDGCHC 3 cut(s) 176, 467, 574
SfaNI GCATC 3 cut(s) 86, 480, 876
SfuI TTCGAA 3 cut(s) 64, 243, 357
SmiMI CAYNNNNRTG 2 cut(s) 142, 766
SmlI CTYRAG 2 cut(s) 250, 429
SmoI CTYRAG 2 cut(s) 250, 429
Sse9I AATT 1 cut(s) 757
SsiI CCGC 1 cut(s) 388
StyD4I CCNGG 4 cut(s) 83, 333, 728, 881
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 4 cut(s) 141, 451, 462, 533
TaiI ACGT 1 cut(s) 605
TaqI TCGA 3 cut(s) 64, 243, 357
TaqII GACCGA 1 cut(s) 99
TasI AATT 1 cut(s) 757
TfiI GAWTC 1 cut(s) 639
Tru1I TTAA 3 cut(s) 281, 472, 599
Tru9I TTAA 3 cut(s) 281, 472, 599
TscAI CASTG 3 cut(s) 39, 666, 807
TseFI GTSAC 2 cut(s) 312, 667
TseI GCWGC 2 cut(s) 511, 937
Tsp45I GTSAC 2 cut(s) 312, 667
TspDTI ATGAA 4 cut(s) 212, 602, 696, 865
TspGWI ACGGA 2 cut(s) 159, 547
TspRI CASTG 3 cut(s) 39, 666, 807
Van91I CCANNNNNTGG 1 cut(s) 526
VneI GTGCAC 1 cut(s) 172
XceI RCATGY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.