BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31130 AT4G19950 AT5G44860 AT5G44860 |
| fragaria_vesca | FvH4_3g12480 |
| malus_domestica | MD10G1230900.v1.1 |
| prunus_persica | Prupe.4G113700_v2.0.a1 |
| pyrus_communis | pycom10g19420 |
| rosa_chinensis | RchiOBHm_Chr5g0020421 |
| rosa_laevigata | RLG00000032529 |
| rosa_multiflora | Rmu_sc0000033.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00057850 |
| rosa_rugosa | Rorug05G0059300 |
| rosa_samantha | Rh5AG150000 Rh5BG149200 Rh5CG160800 Rh5DG148400 |
| rosa_wichuraiana | Rw5G013270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 614 |
| AciI | CCGC | 2 cut(s) | 294, 612 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcsI | RAATTY | 1 cut(s) | 74 |
| AcuI | CTGAAG | 1 cut(s) | 180 |
| AfaI | GTAC | 1 cut(s) | 428 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 402, 602 |
| AgsI | TTSAA | 5 cut(s) | 26, 41, 351, 379, 593 |
| AluBI | AGCT | 5 cut(s) | 22, 173, 178, 470, 572 |
| AluI | AGCT | 5 cut(s) | 22, 173, 178, 470, 572 |
| Alw26I | GTCTC | 1 cut(s) | 586 |
| AlwI | GGATC | 1 cut(s) | 12 |
| ApeKI | GCWGC | 2 cut(s) | 11, 817 |
| ApoI | RAATTY | 1 cut(s) | 74 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 21 |
| AspS9I | GGNCC | 1 cut(s) | 225 |
| AsuHPI | GGTGA | 3 cut(s) | 298, 749, 926 |
| AvaII | GGWCC | 1 cut(s) | 225 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 611, 643 |
| BbsI | GAAGAC | 3 cut(s) | 295, 430, 493 |
| BbvI | GCAGC | 1 cut(s) | 804 |
| BccI | CCATC | 3 cut(s) | 502, 661, 940 |
| BceAI | ACGGC | 2 cut(s) | 281, 910 |
| BcoDI | GTCTC | 1 cut(s) | 586 |
| BfaI | CTAG | 4 cut(s) | 179, 573, 794, 809 |
| BfmI | CTRYAG | 1 cut(s) | 12 |
| BisI | GCNGC | 4 cut(s) | 12, 294, 612, 818 |
| BlpI | GCTNAGC | 1 cut(s) | 174 |
| BlsI | GCNGC | 4 cut(s) | 13, 295, 613, 819 |
| Bme18I | GGWCC | 1 cut(s) | 225 |
| BmgT120I | GGNCC | 1 cut(s) | 225 |
| BmiI | GGNNCC | 1 cut(s) | 227 |
| BmsI | GCATC | 2 cut(s) | 172, 408 |
| BpiI | GAAGAC | 3 cut(s) | 295, 430, 493 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 174 |
| Bsa29I | ATCGAT | 1 cut(s) | 474 |
| BsaAI | YACGTR | 1 cut(s) | 53 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 402, 602 |
| Bse1I | ACTGG | 1 cut(s) | 335 |
| BseCI | ATCGAT | 1 cut(s) | 474 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 402, 602 |
| BseMII | CTCAG | 1 cut(s) | 188 |
| BseNI | ACTGG | 1 cut(s) | 335 |
| BseRI | GAGGAG | 1 cut(s) | 180 |
| BseXI | GCAGC | 1 cut(s) | 804 |
| BsgI | GTGCAG | 1 cut(s) | 845 |
| Bsh1236I | CGCG | 1 cut(s) | 614 |
| BshVI | ATCGAT | 1 cut(s) | 474 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 402, 602 |
| BsmAI | GTCTC | 1 cut(s) | 586 |
| Bsp1407I | TGTACA | 1 cut(s) | 426 |
| Bsp143I | GATC | 4 cut(s) | 4, 199, 462, 892 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 174 |
| BspACI | CCGC | 2 cut(s) | 294, 612 |
| BspCNI | CTCAG | 1 cut(s) | 187 |
| BspDI | ATCGAT | 1 cut(s) | 474 |
| BspFNI | CGCG | 1 cut(s) | 614 |
| BspLI | GGNNCC | 1 cut(s) | 227 |
| BspMAI | CTGCAG | 1 cut(s) | 16 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspQI | GCTCTTC | 1 cut(s) | 12 |
| BsrGI | TGTACA | 1 cut(s) | 426 |
| BsrI | ACTGG | 1 cut(s) | 335 |
| BssMI | GATC | 4 cut(s) | 4, 199, 462, 892 |
| Bst4CI | ACNGT | 2 cut(s) | 310, 605 |
| Bst6I | CTCTTC | 5 cut(s) | 12, 272, 285, 352, 617 |
| BstAUI | TGTACA | 1 cut(s) | 426 |
| BstBAI | YACGTR | 1 cut(s) | 53 |
| BstDEI | CTNAG | 2 cut(s) | 169, 174 |
| BstFNI | CGCG | 1 cut(s) | 614 |
| BstKTI | GATC | 4 cut(s) | 7, 202, 465, 895 |
| BstMAI | GTCTC | 1 cut(s) | 586 |
| BstMBI | GATC | 4 cut(s) | 4, 199, 462, 892 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 140, 823 |
| BstSFI | CTRYAG | 1 cut(s) | 12 |
| BstUI | CGCG | 1 cut(s) | 614 |
| BstV1I | GCAGC | 1 cut(s) | 804 |
| BstV2I | GAAGAC | 3 cut(s) | 295, 430, 493 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| Bsu15I | ATCGAT | 1 cut(s) | 474 |
| BsuTUI | ATCGAT | 1 cut(s) | 474 |
| BtgZI | GCGATG | 1 cut(s) | 629 |
| BtsI | GCAGTG | 1 cut(s) | 699 |
| BtsIMutI | CAGTG | 1 cut(s) | 699 |
| Cfr13I | GGNCC | 1 cut(s) | 225 |
| ClaI | ATCGAT | 1 cut(s) | 474 |
| Csp6I | GTAC | 1 cut(s) | 427 |
| CviAII | CATG | 3 cut(s) | 542, 550, 731 |
| CviJI | RGCY | 9 cut(s) | 22, 173, 178, 293, 334, 470, 572, 817, 868 |
| CviKI_1 | RGCY | 9 cut(s) | 22, 173, 178, 293, 334, 470, 572, 817, 868 |
| CviQI | GTAC | 1 cut(s) | 427 |
| DdeI | CTNAG | 2 cut(s) | 169, 174 |
| DpnI | GATC | 4 cut(s) | 6, 201, 464, 894 |
| DpnII | GATC | 4 cut(s) | 4, 199, 462, 892 |
| Eam1104I | CTCTTC | 5 cut(s) | 12, 272, 285, 352, 617 |
| EarI | CTCTTC | 5 cut(s) | 12, 272, 285, 352, 617 |
| Eco32I | GATATC | 1 cut(s) | 908 |
| Eco47I | GGWCC | 1 cut(s) | 225 |
| Eco57I | CTGAAG | 1 cut(s) | 180 |
| EcoRV | GATATC | 1 cut(s) | 908 |
| FaeI | CATG | 3 cut(s) | 545, 553, 734 |
| FaiI | YATR | 9 cut(s) | 47, 101, 543, 551, 656, 677, 732, 843, 921 |
| FatI | CATG | 3 cut(s) | 541, 549, 730 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 294, 612, 818 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 294, 612, 818 |
| FspBI | CTAG | 4 cut(s) | 179, 573, 794, 809 |
| GluI | GCNGC | 4 cut(s) | 12, 294, 612, 818 |
| Hin1II | CATG | 3 cut(s) | 545, 553, 734 |
| HinfI | GANTC | 6 cut(s) | 56, 364, 490, 696, 790, 805 |
| HphI | GGTGA | 3 cut(s) | 298, 749, 926 |
| Hpy166II | GTNNAC | 3 cut(s) | 427, 547, 756 |
| Hpy188I | TCNGA | 2 cut(s) | 199, 945 |
| Hpy188III | TCNNGA | 3 cut(s) | 218, 505, 590 |
| Hpy8I | GTNNAC | 3 cut(s) | 427, 547, 756 |
| Hpy99I | CGWCG | 2 cut(s) | 302, 314 |
| HpyAV | CCTTC | 6 cut(s) | 100, 139, 204, 239, 283, 406 |
| HpyCH4III | ACNGT | 2 cut(s) | 310, 605 |
| HpyCH4IV | ACGT | 2 cut(s) | 52, 255 |
| HpyCH4V | TGCA | 4 cut(s) | 14, 185, 826, 889 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 140, 823 |
| HpyF3I | CTNAG | 2 cut(s) | 169, 174 |
| HpySE526I | ACGT | 2 cut(s) | 52, 255 |
| Hsp92II | CATG | 3 cut(s) | 545, 553, 734 |
| Kzo9I | GATC | 4 cut(s) | 4, 199, 462, 892 |
| LguI | GCTCTTC | 1 cut(s) | 12 |
| LpnPI | CCDG | 3 cut(s) | 348, 356, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 804 |
| LweI | GCATC | 2 cut(s) | 172, 408 |
| MaeI | CTAG | 4 cut(s) | 179, 573, 794, 809 |
| MaeII | ACGT | 2 cut(s) | 52, 255 |
| MaeIII | GTNAC | 2 cut(s) | 626, 914 |
| MalI | GATC | 4 cut(s) | 6, 201, 464, 894 |
| MboI | GATC | 4 cut(s) | 4, 199, 462, 892 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MluCI | AATT | 4 cut(s) | 26, 74, 114, 245 |
| MnlI | CCTC | 8 cut(s) | 107, 132, 149, 161, 201, 275, 378, 728 |
| MroXI | GAANNNNTTC | 1 cut(s) | 21 |
| MseI | TTAA | 4 cut(s) | 413, 639, 929, 964 |
| MslI | CAYNNNNRTG | 2 cut(s) | 735, 900 |
| MvnI | CGCG | 1 cut(s) | 614 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 140, 823 |
| NdeII | GATC | 4 cut(s) | 4, 199, 462, 892 |
| NlaIII | CATG | 3 cut(s) | 545, 553, 734 |
| NlaIV | GGNNCC | 1 cut(s) | 227 |
| NmuCI | GTSAC | 1 cut(s) | 914 |
| PciSI | GCTCTTC | 1 cut(s) | 12 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 306, 471 |
| PdmI | GAANNNNTTC | 1 cut(s) | 21 |
| PfeI | GAWTC | 6 cut(s) | 56, 364, 490, 696, 790, 805 |
| PkrI | GCNGC | 4 cut(s) | 13, 295, 613, 819 |
| Ppu21I | YACGTR | 1 cut(s) | 53 |
| PspN4I | GGNNCC | 1 cut(s) | 227 |
| PspPI | GGNCC | 1 cut(s) | 225 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 570, 602 |
| PstI | CTGCAG | 1 cut(s) | 16 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| RsaI | GTAC | 1 cut(s) | 428 |
| RsaNI | GTAC | 1 cut(s) | 427 |
| RseI | CAYNNNNRTG | 2 cut(s) | 735, 900 |
| SapI | GCTCTTC | 1 cut(s) | 12 |
| SaqAI | TTAA | 4 cut(s) | 413, 639, 929, 964 |
| SatI | GCNGC | 4 cut(s) | 12, 294, 612, 818 |
| Sau3AI | GATC | 4 cut(s) | 4, 199, 462, 892 |
| Sau96I | GGNCC | 1 cut(s) | 225 |
| SfaNI | GCATC | 2 cut(s) | 172, 408 |
| SfcI | CTRYAG | 1 cut(s) | 12 |
| SinI | GGWCC | 1 cut(s) | 225 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 735, 900 |
| Sse9I | AATT | 4 cut(s) | 26, 74, 114, 245 |
| SsiI | CCGC | 2 cut(s) | 294, 612 |
| SspMI | CTAG | 4 cut(s) | 179, 573, 794, 809 |
| TaaI | ACNGT | 2 cut(s) | 310, 605 |
| TaiI | ACGT | 2 cut(s) | 55, 258 |
| TaqI | TCGA | 3 cut(s) | 474, 506, 665 |
| TasI | AATT | 4 cut(s) | 26, 74, 114, 245 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TauI | GCSGC | 2 cut(s) | 296, 614 |
| TfiI | GAWTC | 6 cut(s) | 56, 364, 490, 696, 790, 805 |
| Tru1I | TTAA | 4 cut(s) | 413, 639, 929, 964 |
| Tru9I | TTAA | 4 cut(s) | 413, 639, 929, 964 |
| TscAI | CASTG | 1 cut(s) | 706 |
| TseFI | GTSAC | 1 cut(s) | 914 |
| TseI | GCWGC | 2 cut(s) | 11, 817 |
| Tsp45I | GTSAC | 1 cut(s) | 914 |
| TspDTI | ATGAA | 6 cut(s) | 238, 379, 530, 632, 719, 848 |
| TspRI | CASTG | 1 cut(s) | 706 |
| VpaK11BI | GGWCC | 1 cut(s) | 225 |
| XapI | RAATTY | 1 cut(s) | 74 |
| XmnI | GAANNNNTTC | 1 cut(s) | 21 |
| XspI | CTAG | 4 cut(s) | 179, 573, 794, 809 |