pycom10g19420

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013094
Physical Location & Seq
Reverse (-)
22541672 .. 22542635
964 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19420.1

Sequence Viewer

Length: 876 bp
ATGGATCTGGCGCCGGAGGAGCTCCAATTTCTGACCATCCCAGACATCTTCAGAGAATCCACCTCCATCCCCAAACAGTCCCCCAAGACCTTCTACCTCATAACCCTAACCTTAATTTTCCCTCTCTCCTTCGCCATCCTCGCCCATTCCCTCTTCACCCACCCCCTCCTCAACCAGCTCCAAGCCTCCTCCACCGACCCCGCCCAGCTCCACCACAAATGGTCCCTCCTCCTCCTCTTCCAATTCTGCTACCTCATATTCCTCTTCGCCTTCTCCCTCCTCTCCACCGCCGCCGTCGTCTTCACCGCTGCCTCCCTCTACACCTCCAAGCCCGTCTCCTTCTCCAACACCCTCTCCGCCATCCCCAAAGTCTTCAAGCGCCTCTTCATCACTTTCCTCTGGGTCTCCCTCCTTATGGTCTGCTACAATTTCGTCTTCGTCGGCTTCCTCATCCTCCTCATCCTCGCCATCGATACCCATAACCCCTTTCTCCTCCTCTTCTCCGCCATTGTCATCTTCCTCCTCTTCCTCGTCGTCCATGTCTACATCACCGCCCTCTGGCACTTGGCCAGCGTCGTCTCCGTCCTCGAGCCCGTCTACGGGTTCACCGCCATGAAGAAGAGCTACGAGCTCCTTAAAGGGAAGGTTGGGATGGCCTTCGTCCTCGTTTTCGGCTACTTGACCCTCTGCGCGGTCATCGGTGCCGTTTTCGGGTCGGTGGTGGTTCACGGCGGGGAGGATTATGGGGTTTTTGTGAGGATTGTGGTTGGTGGGTTTTTGGTGGGTGTGCTGGTGATTGTGAATTTGGTTGGATTGCTATTGCAGAAGTATGTACCTCTCAAGAGCAGCATTCAGATGGAAAACTTGGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.4

Weight (kDa)

8.37

Isoelectric Point (pI)

26.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31130 AT4G19950 AT5G44860 AT5G44860
fragaria_vesca FvH4_3g12480
malus_domestica MD10G1230900.v1.1
prunus_persica Prupe.4G113700_v2.0.a1
pyrus_communis pycom10g19420
rosa_chinensis RchiOBHm_Chr5g0020421
rosa_laevigata RLG00000032529
rosa_multiflora Rmu_sc0000033.1_g000010
rosa_roxburghii Rroxscaffold_1G00057850
rosa_rugosa Rorug05G0059300
rosa_samantha Rh5AG150000 Rh5BG149200 Rh5CG160800 Rh5DG148400
rosa_wichuraiana Rw5G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 10, 701
AccI GTMKAC 2 cut(s) 543, 597
AccII CGCG 1 cut(s) 692
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 834
AfiI CCNNNNNNNGG 6 cut(s) 415, 558, 599, 600, 691, 711
AgsI TTSAA 1 cut(s) 376
AluBI AGCT 5 cut(s) 22, 178, 208, 624, 631
AluI AGCT 5 cut(s) 22, 178, 208, 624, 631
Alw21I GWGCWC 2 cut(s) 24, 633
Alw26I GTCTC 3 cut(s) 340, 409, 583
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 2 cut(s) 567, 654
ApeKI GCWGC 2 cut(s) 308, 846
ApoI RAATTY 1 cut(s) 802
AspLEI GCGC 3 cut(s) 13, 381, 692
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 5 cut(s) 148, 295, 541, 598, 805
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 2 cut(s) 10, 701
BanII GRGCYC 3 cut(s) 24, 594, 633
BarI GAAGNNNNNNTAC 2 cut(s) 608, 640
BbsI GAAGAC 3 cut(s) 292, 364, 427
Bbv12I GWGCWC 2 cut(s) 24, 633
BbvI GCAGC 2 cut(s) 295, 858
BccI CCATC 7 cut(s) 44, 74, 143, 368, 476, 646, 850
BceAI ACGGC 3 cut(s) 278, 689, 745
BcoDI GTCTC 3 cut(s) 340, 409, 583
BfoI RGCGCY 2 cut(s) 14, 382
BisI GCNGC 3 cut(s) 291, 309, 847
BlsI GCNGC 3 cut(s) 292, 310, 848
Bme18I GGWCC 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 12, 224, 703
BpiI GAAGAC 3 cut(s) 292, 364, 427
BpuEI CTTGAG 1 cut(s) 824
Bsa29I ATCGAT 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 6 cut(s) 415, 558, 599, 600, 691, 711
BseCI ATCGAT 1 cut(s) 471
BseGI GGATG 8 cut(s) 36, 66, 135, 360, 450, 459, 657, 874
BseLI CCNNNNNNNGG 6 cut(s) 415, 558, 599, 600, 691, 711
BseXI GCAGC 2 cut(s) 295, 858
BseYI CCCAGC 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 692
BshFI GGCC 2 cut(s) 569, 656
BshNI GGYRCC 2 cut(s) 10, 701
BshVI ATCGAT 1 cut(s) 471
BsiHKAI GWGCWC 2 cut(s) 24, 633
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 2 cut(s) 64, 208
BslI CCNNNNNNNGG 6 cut(s) 415, 558, 599, 600, 691, 711
BsmAI GTCTC 3 cut(s) 340, 409, 583
BsmBI CGTCTC 2 cut(s) 340, 583
BsmFI GGGAC 2 cut(s) 64, 208
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 2 cut(s) 569, 656
Bso31I GGTCTC 1 cut(s) 409
BsoBI CYCGRG 1 cut(s) 587
Bsp1286I GDGCHC 3 cut(s) 24, 594, 633
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 2 cut(s) 569, 656
BspDI ATCGAT 1 cut(s) 471
BspFNI CGCG 1 cut(s) 692
BspLI GGNNCC 3 cut(s) 12, 224, 703
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 614
BspT107I GGYRCC 2 cut(s) 10, 701
BspTNI GGTCTC 1 cut(s) 409
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 7 cut(s) 158, 242, 269, 389, 503, 530, 614
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 571
BstF5I GGATG 8 cut(s) 36, 66, 135, 360, 450, 459, 657, 874
BstFNI CGCG 1 cut(s) 692
BstH2I RGCGCY 2 cut(s) 14, 382
BstHHI GCGC 3 cut(s) 13, 381, 692
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 3 cut(s) 340, 409, 583
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 19, 140
BstUI CGCG 1 cut(s) 692
BstV1I GCAGC 2 cut(s) 295, 858
BstV2I GAAGAC 3 cut(s) 292, 364, 427
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 471
BsuRI GGCC 2 cut(s) 569, 656
BsuTUI ATCGAT 1 cut(s) 471
BtsCI GGATG 8 cut(s) 36, 66, 135, 360, 450, 459, 657, 874
Cac8I GCNNGC 1 cut(s) 571
CfoI GCGC 3 cut(s) 13, 381, 692
Cfr13I GGNCC 1 cut(s) 222
ClaI ATCGAT 1 cut(s) 471
CseI GACGC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 833
CviAII CATG 2 cut(s) 539, 613
CviQI GTAC 1 cut(s) 833
DinI GGCGCC 1 cut(s) 12
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 7 cut(s) 158, 242, 269, 389, 503, 530, 614
EarI CTCTTC 7 cut(s) 158, 242, 269, 389, 503, 530, 614
EciI GGCGGA 2 cut(s) 346, 493
Ecl136II GAGCTC 2 cut(s) 22, 631
Eco24I GRGCYC 3 cut(s) 24, 594, 633
Eco31I GGTCTC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 2 cut(s) 22, 631
Eco57I CTGAAG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 587
EcoICRI GAGCTC 2 cut(s) 22, 631
EcoT38I GRGCYC 3 cut(s) 24, 594, 633
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
Esp3I CGTCTC 2 cut(s) 340, 583
FaeI CATG 2 cut(s) 542, 616
FaiI YATR 8 cut(s) 101, 257, 416, 480, 540, 614, 744, 831
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 2 cut(s) 64, 208
FatI CATG 2 cut(s) 538, 612
FauI CCCGC 2 cut(s) 208, 725
FblI GTMKAC 2 cut(s) 543, 597
Fnu4HI GCNGC 3 cut(s) 291, 309, 847
FokI GGATG 7 cut(s) 23, 53, 122, 347, 437, 446, 664
FriOI GRGCYC 3 cut(s) 24, 594, 633
Fsp4HI GCNGC 3 cut(s) 291, 309, 847
GlaI GCGC 3 cut(s) 12, 380, 691
GluI GCNGC 3 cut(s) 291, 309, 847
GsaI CCCAGC 1 cut(s) 208
HaeII RGCGCY 2 cut(s) 14, 382
HaeIII GGCC 2 cut(s) 569, 656
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 562
HhaI GCGC 3 cut(s) 13, 381, 692
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 542, 616
Hin6I GCGC 3 cut(s) 11, 379, 690
HinP1I GCGC 3 cut(s) 11, 379, 690
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 14
HphI GGTGA 5 cut(s) 148, 295, 541, 598, 805
Hpy166II GTNNAC 4 cut(s) 544, 598, 606, 727
Hpy188I TCNGA 4 cut(s) 33, 53, 855, 875
Hpy188III TCNNGA 1 cut(s) 841
Hpy8I GTNNAC 4 cut(s) 544, 598, 606, 727
Hpy99I CGWCG 4 cut(s) 299, 443, 536, 578
HpyAV CCTTC 6 cut(s) 100, 139, 280, 349, 637, 667
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 823
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 140
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 542, 616
HspAI GCGC 3 cut(s) 11, 379, 690
KasI GGCGCC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 614
LmnI GCTCC 5 cut(s) 19, 27, 183, 213, 636
LpnPI CCDG 8 cut(s) 27, 54, 188, 218, 385, 544, 583, 776
Lsp1109I GCAGC 2 cut(s) 295, 858
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 24, 594, 633
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 5 cut(s) 26, 114, 242, 427, 802
MluNI TGGCCA 1 cut(s) 569
Mly113I GGCGCC 1 cut(s) 11
MmeI TCCRAC 2 cut(s) 369, 790
Mox20I TGGCCA 1 cut(s) 569
MscI TGGCCA 1 cut(s) 569
MseI TTAA 2 cut(s) 113, 636
MslI CAYNNNNRTG 2 cut(s) 611, 854
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 849
MvnI CGCG 1 cut(s) 692
MwoI GCNNNNNNNGC 2 cut(s) 19, 140
NarI GGCGCC 1 cut(s) 11
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 542, 616
NlaIV GGNNCC 3 cut(s) 12, 224, 703
PaeR7I CTCGAG 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 614
PctI GAATGC 1 cut(s) 849
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 292, 310, 848
PluTI GGCGCC 1 cut(s) 14
Psp124BI GAGCTC 2 cut(s) 24, 633
PspFI CCCAGC 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 12, 224, 703
PspPI GGNCC 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 587
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
RseI CAYNNNNRTG 2 cut(s) 611, 854
SacI GAGCTC 2 cut(s) 24, 633
SapI GCTCTTC 1 cut(s) 614
SaqAI TTAA 2 cut(s) 113, 636
SatI GCNGC 3 cut(s) 291, 309, 847
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 222
SduI GDGCHC 3 cut(s) 24, 594, 633
SfoI GGCGCC 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 611, 854
SmlI CTYRAG 2 cut(s) 587, 839
SmoI CTYRAG 2 cut(s) 587, 839
Sse9I AATT 5 cut(s) 26, 114, 242, 427, 802
SspDI GGCGCC 1 cut(s) 10
SstI GAGCTC 2 cut(s) 24, 633
TaaI ACNGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 471, 588
TasI AATT 5 cut(s) 26, 114, 242, 427, 802
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 113, 636
Tru9I TTAA 2 cut(s) 113, 636
TseI GCWGC 2 cut(s) 308, 846
TspDTI ATGAA 2 cut(s) 376, 629
TspGWI ACGGA 1 cut(s) 571
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 802
XhoI CTCGAG 1 cut(s) 587
XmiI GTMKAC 2 cut(s) 543, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.