MD10G1230900.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013094
Physical Location & Seq
Reverse (-)
32765213 .. 32766776
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1230900.v1.1.491

Sequence Viewer

Length: 549 bp
ATGGTCTGCTACAATTTCGTCTTCGTCGGCTTCCTCATCCTCCTCATCCTCGCCATCGATACCCATAACCCCTTTCTCCTCCTCTTCTCCGCCATTGTCATCTTCCTCCTCTTCCTCGTCGTCCATGTCTACATCACCGCCCTCTGGCACTTGGCCAGCGTCGTCTCCGTCCTCGAGCCCGTCTACGGGTTCGCCGCCATGAAGAAGAGCTATGAGCTCCTTAAAGGGAAGGTTGGGATGGCCTTCGTCCTCGTTTTCGGCTACTTGACCCTCTGCGCGGTCATCGGTGCCGTTTTCGGGTCGGTGGTGGTTCACGGCGGGGAGGATTATGGGGTTTTTGTAAGGATTGTGGTTGGTGGGTTTTTGGTGGGTGTGCTGGTGATTGTGAATTTGGTTGGATTGCTATTGCAGAGTGTGTTTTACTATGTCTGCAAGAGTTATCATCACCAGGAGATTGACAAGAGCGCCTTGCACGATCATCTCGGCGGCTATCTTGGAGAGTATGTGCCTCTCAAGAGCAGCATTCAGATGGAAAACTTGGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.08

Weight (kDa)

6.2

Isoelectric Point (pI)

21.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31130 AT4G19950 AT5G44860 AT5G44860
fragaria_vesca FvH4_3g12480
malus_domestica MD10G1230900.v1.1
prunus_persica Prupe.4G113700_v2.0.a1
pyrus_communis pycom10g19420
rosa_chinensis RchiOBHm_Chr5g0020421
rosa_laevigata RLG00000032529
rosa_multiflora Rmu_sc0000033.1_g000010
rosa_roxburghii Rroxscaffold_1G00057850
rosa_rugosa Rorug05G0059300
rosa_samantha Rh5AG150000 Rh5BG149200 Rh5CG160800 Rh5DG148400
rosa_wichuraiana Rw5G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 2 cut(s) 129, 183
AccII CGCG 1 cut(s) 278
AciI CCGC 6 cut(s) 90, 138, 195, 278, 318, 486
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 388
AfiI CCNNNNNNNGG 5 cut(s) 144, 185, 186, 277, 297
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 2 cut(s) 210, 217
AluI AGCT 2 cut(s) 210, 217
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 153, 240
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 1 cut(s) 388
AspLEI GCGC 2 cut(s) 278, 467
AsuHPI GGTGA 3 cut(s) 127, 391, 437
AvaI CYCGRG 1 cut(s) 173
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 180, 219
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 531
BccI CCATC 3 cut(s) 62, 232, 523
BceAI ACGGC 2 cut(s) 275, 331
BciT130I CCWGG 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 468
BisI GCNGC 3 cut(s) 195, 487, 520
BlsI GCNGC 3 cut(s) 196, 488, 521
Bme1390I CCNGG 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 497
Bsa29I ATCGAT 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 185, 186, 277, 297
BseBI CCWGG 1 cut(s) 449
BseCI ATCGAT 1 cut(s) 57
BseGI GGATG 4 cut(s) 36, 45, 243, 547
BseLI CCNNNNNNNGG 5 cut(s) 144, 185, 186, 277, 297
BseRI GAGGAG 4 cut(s) 32, 68, 71, 98
BseXI GCAGC 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 2 cut(s) 155, 242
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 173
BslI CCNNNNNNNGG 5 cut(s) 144, 185, 186, 277, 297
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 2 cut(s) 155, 242
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 180, 219
Bsp143I GATC 1 cut(s) 475
BspACI CCGC 6 cut(s) 90, 138, 195, 278, 318, 486
BspANI GGCC 2 cut(s) 155, 242
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 287
BssMI GATC 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 449
Bst6I CTCTTC 3 cut(s) 89, 116, 200
BstC8I GCNNGC 1 cut(s) 157
BstF5I GGATG 4 cut(s) 36, 45, 243, 547
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 2 cut(s) 278, 467
BstKTI GATC 1 cut(s) 478
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 475
BstNI CCWGG 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 447
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 531
BstV2I GAAGAC 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 2 cut(s) 155, 242
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 4 cut(s) 36, 45, 243, 547
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 2 cut(s) 278, 467
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 148
CviAII CATG 2 cut(s) 125, 199
CviJI RGCY 8 cut(s) 30, 155, 178, 210, 217, 242, 261, 489
CviKI_1 RGCY 8 cut(s) 30, 155, 178, 210, 217, 242, 261, 489
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 3 cut(s) 89, 116, 200
EarI CTCTTC 3 cut(s) 89, 116, 200
EciI GGCGGA 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 180, 219
Eco53kI GAGCTC 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 447
EcoT38I GRGCYC 2 cut(s) 180, 219
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 128, 202
FaiI YATR 7 cut(s) 66, 126, 200, 213, 330, 426, 504
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 2 cut(s) 124, 198
FauI CCCGC 1 cut(s) 311
FblI GTMKAC 2 cut(s) 129, 183
Fnu4HI GCNGC 3 cut(s) 195, 487, 520
FokI GGATG 3 cut(s) 23, 32, 250
FriOI GRGCYC 2 cut(s) 180, 219
Fsp4HI GCNGC 3 cut(s) 195, 487, 520
GlaI GCGC 2 cut(s) 277, 466
GluI GCNGC 3 cut(s) 195, 487, 520
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 2 cut(s) 155, 242
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 278, 467
Hin1II CATG 2 cut(s) 128, 202
Hin6I GCGC 2 cut(s) 276, 465
HinP1I GCGC 2 cut(s) 276, 465
HphI GGTGA 3 cut(s) 127, 391, 437
Hpy166II GTNNAC 3 cut(s) 130, 184, 313
Hpy188I TCNGA 2 cut(s) 528, 548
Hpy188III TCNNGA 1 cut(s) 514
Hpy8I GTNNAC 3 cut(s) 130, 184, 313
Hpy99I CGWCG 3 cut(s) 29, 122, 164
HpyAV CCTTC 2 cut(s) 223, 253
HpyCH4V TGCA 3 cut(s) 409, 432, 472
Hsp92II CATG 2 cut(s) 128, 202
HspAI GCGC 2 cut(s) 276, 465
Kzo9I GATC 1 cut(s) 475
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 5 cut(s) 130, 169, 362, 434, 461
Lsp1109I GCAGC 1 cut(s) 531
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 6 cut(s) 13, 76, 94, 103, 214, 217
MhlI GDGCHC 2 cut(s) 180, 219
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 2 cut(s) 13, 388
MluNI TGGCCA 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 376
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 278
NdeII GATC 1 cut(s) 475
NlaIII CATG 2 cut(s) 128, 202
NlaIV GGNNCC 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 462
PaeR7I CTCGAG 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 200
PctI GAATGC 1 cut(s) 522
PkrI GCNGC 3 cut(s) 196, 488, 521
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 289
PspXI VCTCGAGB 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 527
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 195, 487, 520
Sau3AI GATC 1 cut(s) 475
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 2 cut(s) 180, 219
SetI ASST 3 cut(s) 212, 219, 234
Sfr274I CTCGAG 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 2 cut(s) 173, 512
SmoI CTYRAG 2 cut(s) 173, 512
Sse9I AATT 2 cut(s) 13, 388
SsiI CCGC 6 cut(s) 90, 138, 195, 278, 318, 486
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 447
TaqI TCGA 2 cut(s) 57, 174
TasI AATT 2 cut(s) 13, 388
TauI GCSGC 2 cut(s) 197, 489
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 1 cut(s) 519
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 157
XapI RAATTY 1 cut(s) 388
XhoI CTCGAG 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 129, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.