Rroxscaffold_1G00057850

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013094
Physical Location & Seq
Reverse (-)
79848012 .. 79851423
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057850.1

Sequence Viewer

Length: 963 bp
ATGGATCTGGCCCCGGAAGAACTTCAATTTCTGTCAATCCCAGACATTCTTCGAGAATCGACCTCCATCCCCAAACAGTCCCCCAAAACCTTCTACCTCATAACCCTAACCCTAATCTTCCCTCTCTCCTTCGCAATCCTCGCCCACTCTCTCTTCACCCACCCACTCCTGAACCAGCTCCAGGGCCCCTCCACCGACCCGGCCCAGCTCCACCACAAATGGACCGTCCTCCTCCTCTTCCAGTTCTTCTACCTCATCTTCCTCTTCGCCTTCTCCCTCCTCTCCACCGCCGCCGTCGTCTTCACCGTCGCCTCCCTCTACACCTCCAAGCCGGTCTCCTTCTCCAACACTCTCTCCGCCATCCCCAAAGTCTTCAAGCGCCTCTTCATCACTTTCCTCTGGGTCTCGCTTCTCATGGTCGCCTACAATTTCCTCTTCGTTGGGTTCCTGGTTCTCCTGATCATCGCCATTGATTCCCAGAACCCTCTTCTGCTCTTGTTTTCGGGGGTCGCCGTTGTCGTGTTGTTCTTGGTGGTTCACGTGTACATCACTGCGCTGTGGCACTTGGCGAGTGTGGTTTCTGTGCTGGAGTCCGTTTACGGGTTTGCGGCGATGAAGAAGAGCTATGAGCTGATGAAAGGGAAGACTGGGATGGCGTTTGGGCTTGTTTTCGGCTACTTGGCTAGCTGTGGGATTATTGGAGTGGTTTTCGGGACCGTCGTGGTGCACGGCGGCAGCGATTACGGGGTTTTCGCAAGGATTGTGGTTGGGGGGTTCTTGGTGGGGCTTTTGGTGATTGTCAATTTGGTGGGCTTGTTGCTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTATCATCATCAGGGTATCGATAAGAGTGCTTTGCATGATCATCTTGGAGGGTATCTCGGAGAGTATGTGCCTCTCAAAAGCAGCATTCAGATGGAGAACTTGGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

35.35

Weight (kDa)

7.81

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31130 AT4G19950 AT5G44860 AT5G44860
fragaria_vesca FvH4_3g12480
malus_domestica MD10G1230900.v1.1
prunus_persica Prupe.4G113700_v2.0.a1
pyrus_communis pycom10g19420
rosa_chinensis RchiOBHm_Chr5g0020421
rosa_laevigata RLG00000032529
rosa_multiflora Rmu_sc0000033.1_g000010
rosa_roxburghii Rroxscaffold_1G00057850
rosa_rugosa Rorug05G0059300
rosa_samantha Rh5AG150000 Rh5BG149200 Rh5CG160800 Rh5DG148400
rosa_wichuraiana Rw5G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 288, 291, 357, 608, 732
AclWI GGATC 1 cut(s) 12
AcvI CACGTG 1 cut(s) 541
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 181, 600
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 2 cut(s) 26, 376
AjnI CCWGG 2 cut(s) 180, 447
AluBI AGCT 5 cut(s) 178, 208, 624, 631, 687
AluI AGCT 5 cut(s) 178, 208, 624, 631, 687
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 2 cut(s) 340, 409
Alw44I GTGCAC 1 cut(s) 725
AlwI GGATC 1 cut(s) 12
AoxI GGCC 3 cut(s) 9, 184, 201
ApaI GGGCCC 1 cut(s) 188
ApaLI GTGCAC 1 cut(s) 725
ApeKI GCWGC 3 cut(s) 735, 820, 933
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 2 cut(s) 381, 556
AspS9I GGNCC 6 cut(s) 10, 184, 185, 202, 222, 714
AsuC2I CCSGG 2 cut(s) 14, 200
AsuHPI GGTGA 3 cut(s) 148, 295, 805
AsuNHI GCTAGC 1 cut(s) 683
AvaII GGWCC 2 cut(s) 222, 714
BaeGI GKGCMC 2 cut(s) 188, 729
BanII GRGCYC 1 cut(s) 188
BbrPI CACGTG 1 cut(s) 541
BbsI GAAGAC 3 cut(s) 292, 364, 650
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 3 cut(s) 747, 807, 945
BccI CCATC 4 cut(s) 74, 368, 646, 937
BceAI ACGGC 3 cut(s) 278, 497, 745
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BciT130I CCWGG 2 cut(s) 182, 449
BclI TGATCA 2 cut(s) 459, 889
BcnI CCSGG 2 cut(s) 14, 200
BcoDI GTCTC 2 cut(s) 340, 409
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 1 cut(s) 821
BfoI RGCGCY 1 cut(s) 382
BisI GCNGC 6 cut(s) 291, 609, 733, 736, 821, 934
BlsI GCNGC 6 cut(s) 292, 610, 734, 737, 822, 935
Bme1390I CCNGG 4 cut(s) 14, 182, 200, 449
Bme18I GGWCC 2 cut(s) 222, 714
BmgT120I GGNCC 6 cut(s) 10, 184, 185, 202, 222, 714
BmiI GGNNCC 5 cut(s) 12, 186, 187, 446, 715
BmrFI CCNGG 4 cut(s) 14, 182, 200, 449
BmrI ACTGGG 1 cut(s) 657
BmtI GCTAGC 1 cut(s) 687
BmuI ACTGGG 1 cut(s) 657
BpiI GAAGAC 3 cut(s) 292, 364, 650
BplI GAGNNNNNCTC 2 cut(s) 891, 923
BpmI CTGGAG 2 cut(s) 164, 608
BpuMI CCSGG 2 cut(s) 14, 200
Bsa29I ATCGAT 1 cut(s) 870
BsaAI YACGTR 1 cut(s) 541
BsaI GGTCTC 2 cut(s) 340, 409
BsaJI CCNNGG 2 cut(s) 12, 181
BsaXI ACNNNNNCTCC 4 cut(s) 338, 368, 903, 933
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 600
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 241, 652
BseBI CCWGG 2 cut(s) 182, 449
BseCI ATCGAT 1 cut(s) 870
BseDI CCNNGG 2 cut(s) 12, 181
BseGI GGATG 4 cut(s) 66, 360, 657, 961
BseLI CCNNNNNNNGG 2 cut(s) 181, 600
BseNI ACTGG 2 cut(s) 241, 652
BseRI GAGGAG 3 cut(s) 221, 224, 269
BseSI GKGCMC 2 cut(s) 188, 729
BseXI GCAGC 3 cut(s) 747, 807, 945
BseYI CCCAGC 1 cut(s) 204
BshFI GGCC 3 cut(s) 11, 186, 203
BshVI ATCGAT 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 3 cut(s) 14, 200, 332
BslFI GGGAC 2 cut(s) 64, 727
BslI CCNNNNNNNGG 2 cut(s) 181, 600
BsmAI GTCTC 2 cut(s) 340, 409
BsmFI GGGAC 2 cut(s) 64, 727
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 3 cut(s) 11, 186, 203
Bso31I GGTCTC 2 cut(s) 340, 409
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 188, 729
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 4, 459, 889
BspACI CCGC 5 cut(s) 288, 291, 357, 608, 732
BspANI GGCC 3 cut(s) 11, 186, 203
BspDI ATCGAT 1 cut(s) 870
BspLI GGNNCC 5 cut(s) 12, 186, 187, 446, 715
BspMAI CTGCAG 1 cut(s) 825
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 614
BspTNI GGTCTC 2 cut(s) 340, 409
BsrFI RCCGGY 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 241, 652
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 12, 181
BssMI GATC 3 cut(s) 4, 459, 889
Bst2UI CCWGG 2 cut(s) 182, 449
Bst4CI ACNGT 4 cut(s) 78, 226, 307, 718
Bst6I CTCTTC 7 cut(s) 158, 242, 269, 389, 440, 492, 614
BstAUI TGTACA 1 cut(s) 543
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 685
BstF5I GGATG 4 cut(s) 66, 360, 657, 961
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 2 cut(s) 381, 556
BstKTI GATC 3 cut(s) 7, 462, 892
BstMAI GTCTC 2 cut(s) 340, 409
BstMBI GATC 3 cut(s) 4, 459, 889
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 2 cut(s) 182, 449
BstSCI CCNGG 4 cut(s) 12, 180, 198, 447
BstSFI CTRYAG 1 cut(s) 821
BstSLI GKGCMC 2 cut(s) 188, 729
BstV1I GCAGC 3 cut(s) 747, 807, 945
BstV2I GAAGAC 3 cut(s) 292, 364, 650
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 870
BsuRI GGCC 3 cut(s) 11, 186, 203
BsuTUI ATCGAT 1 cut(s) 870
BtgZI GCGATG 2 cut(s) 448, 626
BtsCI GGATG 4 cut(s) 66, 360, 657, 961
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 685
CfoI GCGC 2 cut(s) 381, 556
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 6 cut(s) 10, 184, 185, 202, 222, 714
ClaI ATCGAT 1 cut(s) 870
Csp6I GTAC 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 2 cut(s) 415, 887
CviQI GTAC 1 cut(s) 544
DpnI GATC 3 cut(s) 6, 461, 891
DpnII GATC 3 cut(s) 4, 459, 889
Eam1104I CTCTTC 7 cut(s) 158, 242, 269, 389, 440, 492, 614
EarI CTCTTC 7 cut(s) 158, 242, 269, 389, 440, 492, 614
EciI GGCGGA 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 2 cut(s) 340, 409
Eco47I GGWCC 2 cut(s) 222, 714
Eco72I CACGTG 1 cut(s) 541
EcoO109I RGGNCCY 2 cut(s) 184, 185
EcoRII CCWGG 2 cut(s) 180, 447
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 2 cut(s) 418, 890
FaiI YATR 6 cut(s) 101, 416, 627, 840, 888, 918
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 2 cut(s) 64, 727
FatI CATG 2 cut(s) 414, 886
FbaI TGATCA 2 cut(s) 459, 889
Fnu4HI GCNGC 6 cut(s) 291, 609, 733, 736, 821, 934
FokI GGATG 3 cut(s) 53, 347, 664
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 6 cut(s) 291, 609, 733, 736, 821, 934
FspBI CTAG 1 cut(s) 684
GlaI GCGC 2 cut(s) 380, 555
GluI GCNGC 6 cut(s) 291, 609, 733, 736, 821, 934
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 2 cut(s) 164, 608
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 3 cut(s) 11, 186, 203
HapII CCGG 3 cut(s) 14, 200, 332
HhaI GCGC 2 cut(s) 381, 556
Hin1II CATG 2 cut(s) 418, 890
Hin6I GCGC 2 cut(s) 379, 554
HinP1I GCGC 2 cut(s) 379, 554
HinfI GANTC 3 cut(s) 56, 473, 590
HpaII CCGG 3 cut(s) 14, 200, 332
HphI GGTGA 3 cut(s) 148, 295, 805
Hpy166II GTNNAC 4 cut(s) 538, 544, 598, 727
Hpy188I TCNGA 2 cut(s) 911, 942
Hpy188III TCNNGA 4 cut(s) 53, 169, 457, 712
Hpy8I GTNNAC 4 cut(s) 538, 544, 598, 727
Hpy99I CGWCG 3 cut(s) 299, 311, 722
HpyAV CCTTC 4 cut(s) 100, 139, 280, 349
HpyCH4III ACNGT 4 cut(s) 78, 226, 307, 718
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 4 cut(s) 727, 823, 846, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 2 cut(s) 418, 890
HspAI GCGC 2 cut(s) 379, 554
Ksp22I TGATCA 2 cut(s) 459, 889
Kzo9I GATC 3 cut(s) 4, 459, 889
LguI GCTCTTC 1 cut(s) 614
LmnI GCTCC 2 cut(s) 183, 213
Lsp1109I GCAGC 3 cut(s) 747, 807, 945
MaeI CTAG 1 cut(s) 684
MaeII ACGT 1 cut(s) 540
MalI GATC 3 cut(s) 6, 461, 891
MboI GATC 3 cut(s) 4, 459, 889
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 188, 729
MluCI AATT 3 cut(s) 26, 427, 802
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 941
MspI CCGG 3 cut(s) 14, 200, 332
MspR9I CCNGG 4 cut(s) 14, 182, 200, 449
Mva1269I GAATGC 1 cut(s) 936
MvaI CCWGG 2 cut(s) 182, 449
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 2 cut(s) 14, 200
NdeII GATC 3 cut(s) 4, 459, 889
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 2 cut(s) 418, 890
NlaIV GGNNCC 5 cut(s) 12, 186, 187, 446, 715
PciSI GCTCTTC 1 cut(s) 614
PcsI WCGNNNNNNNCGW 4 cut(s) 303, 516, 717, 735
PctI GAATGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 2 cut(s) 56, 473
PkrI GCNGC 6 cut(s) 292, 610, 734, 737, 822, 935
PleI GAGTC 1 cut(s) 598
PmaCI CACGTG 1 cut(s) 541
PmlI CACGTG 1 cut(s) 541
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 180, 447
PspCI CACGTG 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 2 cut(s) 180, 447
PspN4I GGNNCC 5 cut(s) 12, 186, 187, 446, 715
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 6 cut(s) 10, 184, 185, 202, 222, 714
PstI CTGCAG 1 cut(s) 825
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 941
SapI GCTCTTC 1 cut(s) 614
SatI GCNGC 6 cut(s) 291, 609, 733, 736, 821, 934
Sau3AI GATC 3 cut(s) 4, 459, 889
Sau96I GGNCC 6 cut(s) 10, 184, 185, 202, 222, 714
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 4 cut(s) 14, 182, 200, 449
SduI GDGCHC 2 cut(s) 188, 729
SfcI CTRYAG 1 cut(s) 821
SinI GGWCC 2 cut(s) 222, 714
SmiMI CAYNNNNRTG 1 cut(s) 941
Sse9I AATT 3 cut(s) 26, 427, 802
SsiI CCGC 5 cut(s) 288, 291, 357, 608, 732
SspMI CTAG 1 cut(s) 684
StyD4I CCNGG 4 cut(s) 12, 180, 198, 447
TaaI ACNGT 4 cut(s) 78, 226, 307, 718
TaiI ACGT 1 cut(s) 543
TaqI TCGA 3 cut(s) 52, 59, 870
TasI AATT 3 cut(s) 26, 427, 802
TatI WGTACW 1 cut(s) 543
TauI GCSGC 3 cut(s) 293, 611, 735
TfiI GAWTC 2 cut(s) 56, 473
TscAI CASTG 1 cut(s) 556
TseI GCWGC 3 cut(s) 735, 820, 933
TspDTI ATGAA 3 cut(s) 376, 629, 650
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 1 cut(s) 556
VneI GTGCAC 1 cut(s) 725
VpaK11BI GGWCC 2 cut(s) 222, 714
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.