Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013094

Physical Location & Seq

Genomic Coordinates Forward (+)

15092832 .. 15093380

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG148400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTCGCCTACAATTTCCTCTTCGTTGGGTTCTTGGTTCTCCTCATCATCGCCATTGATTCCCAGAACCCTCTTCTGCTCTTGTTTTCGGGGGTCGCCGTTGTCGTGTTGTTCTTGGTGGTTCATGTGTACATCACTGCGCTGTGGCACTTGGCGAGTGTGGTCTCTGTGCTGGAGTCGGTTTACGGGTTTGCGGCGATGAAGAAGAGCTATGAGCTGATGAAGGGGAAGACTGGGATGGCGTTTGTGCTTGTTTTCGGGTACTTGACTAGCTGTGGGATTATTGGAGTGGTTTTCGGGACGGTGGTGGTGCACGGCGGCAGCGATTACGGGGTTTTCGCAAGGATTTTGGTTGGGGGGTTCTTGGTGGGGCTTTTGGTGATTGTGAATTTGGTGGGCTTGTTGCTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTATCATCATCAGGGTATCGATAAGAGTGCTTTGCATGATCATCTTGGGGGGTATCTCGGAGAGTATGTGCCTCTCAAAAGCAGCATTCAGATGGAGAACTTGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.77

Weight (kDa)

6.63

Isoelectric Point (pI)

19.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31130 AT4G19950 AT5G44860 AT5G44860
fragaria_vesca	FvH4_3g12480
malus_domestica	MD10G1230900.v1.1
prunus_persica	Prupe.4G113700_v2.0.a1
pyrus_communis	pycom10g19420
rosa_chinensis	RchiOBHm_Chr5g0020421
rosa_laevigata	RLG00000032529
rosa_multiflora	Rmu_sc0000033.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057850
rosa_rugosa	Rorug05G0059300
rosa_samantha	Rh5AG150000 Rh5BG149200 Rh5CG160800 Rh5DG148400
rosa_wichuraiana	Rw5G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 318
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	2 cut(s)	131, 263
AluBI	AGCT	3 cut(s)	210, 217, 273
AluI	AGCT	3 cut(s)	210, 217, 273
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	169
Alw44I	GTGCAC	1 cut(s)	311
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	321, 406, 519
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	333, 393, 531
BccI	CCATC	2 cut(s)	232, 523
BceAI	ACGGC	2 cut(s)	83, 331
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	407
BisI	GCNGC	5 cut(s)	195, 319, 322, 407, 520
BlsI	GCNGC	5 cut(s)	196, 320, 323, 408, 521
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bse1I	ACTGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	456
BseGI	GGATG	2 cut(s)	243, 547
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	3 cut(s)	333, 393, 531
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	522
Bso31I	GGTCTC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	2 cut(s)	194, 318
BspDI	ATCGAT	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	3 cut(s)	26, 78, 200
BstAUI	TGTACA	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	243, 547
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	333, 393, 531
BstV2I	GAAGAC	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	456
BsuTUI	ATCGAT	1 cut(s)	456
BtgZI	GCGATG	2 cut(s)	34, 212
BtsCI	GGATG	2 cut(s)	243, 547
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	142
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	130, 262
CviAII	CATG	2 cut(s)	125, 473
CviJI	RGCY	5 cut(s)	210, 217, 273, 373, 399
CviKI_1	RGCY	5 cut(s)	210, 217, 273, 373, 399
CviQI	GTAC	2 cut(s)	130, 262
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
Eam1104I	CTCTTC	3 cut(s)	26, 78, 200
EarI	CTCTTC	3 cut(s)	26, 78, 200
Eco31I	GGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	128, 476
FaiI	YATR	5 cut(s)	126, 213, 426, 474, 504
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	124, 472
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	5 cut(s)	195, 319, 322, 407, 520
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	5 cut(s)	195, 319, 322, 407, 520
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	5 cut(s)	195, 319, 322, 407, 520
GsuI	CTGGAG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	128, 476
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	59, 176
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	130, 184, 313
Hpy188I	TCNGA	2 cut(s)	497, 528
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	3 cut(s)	130, 184, 313
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	313, 409, 432, 472
Hsp92II	CATG	2 cut(s)	128, 476
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	475
LguI	GCTCTTC	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	77, 158, 219, 434
Lsp1109I	GCAGC	3 cut(s)	333, 393, 531
MaeI	CTAG	1 cut(s)	270
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	5 cut(s)	13, 65, 214, 217, 241
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	13, 388
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	29, 53, 81, 519
MslI	CAYNNNNRTG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	522
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	2 cut(s)	128, 476
PciSI	GCTCTTC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 321
PctI	GAATGC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	5 cut(s)	196, 320, 323, 408, 521
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	411
RsaI	GTAC	2 cut(s)	131, 263
RsaNI	GTAC	2 cut(s)	130, 262
RseI	CAYNNNNRTG	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	200
SatI	GCNGC	5 cut(s)	195, 319, 322, 407, 520
Sau3AI	GATC	1 cut(s)	475
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	3 cut(s)	212, 219, 275
SfcI	CTRYAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	527
Sse9I	AATT	2 cut(s)	13, 388
SsiI	CCGC	2 cut(s)	194, 318
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	456
TasI	AATT	2 cut(s)	13, 388
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	2 cut(s)	197, 321
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	3 cut(s)	321, 406, 519
TspDTI	ATGAA	3 cut(s)	113, 215, 236
TspRI	CASTG	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	388
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.