Prupe.4G113700_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013094
Physical Location & Seq
Reverse (-)
6044131 .. 6045458
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G113700.1

Sequence Viewer

Length: 963 bp
ATGGATCTGGCCCCAGAGGAGCTTCAATTTCTCACCATCCCAGACATCCTCAGAGAATCAACCTCCATCCCCAAACAGTCCCCTAAGACCTTCTACCTCATAACCCTAACCCTAATTTTCCCCCTCTCCTTCGCAATCCTAGCCCATTCCCTCTTCACCCACCCTCTCCTTAACCAGCTTCAAGGCCCGTCCACCGACCCGGCCCAACTCCACCACAAATGGACCGTCCTCCTCCTCTTCCAGTTCTGCTACCTCATCTTCCTCTTCGCCTTCTCTCTCCTTTCCACAGCCGCAGTGGTCTTCACTGTCGCTTCCCTCTACACCTCAAAGCCCGTCTCTTTCTCCTCAACACTCTCCGCCATCCCCAAAGTCTTCAAGCGCCTCTTCATCACTTTCCTCTGGGTCTCTCTCCTAATGGTCTGTTACAATTTCGTCTTCGTGGCTTTTTTGATCCTTCTCATTCTCGCCATTGATACCCAGAACCCACTTTTGCTTCTTTTCTCCGGCGTTGTACTGTTTCTTCTATTCTTGGTTGTACATGTTTATATAACCGTGGTCTGGCATTTGGCCAGCGTTGTTTCTGTACTTGAGCCCGTTTATGGGTTCGCTGCGATGAAGAAGAGCTATGAGCTGCTGAAGGGGAAGATTGGAATGGCTTTTTTGCTGGTGTTCGGGTATTTGTCCATTTGTGGAGTTATCGGAGGCGTTTTTGGGACAGTGGTGGTCCATGGCGGGGAAGATTATGGGGTTTTTGTGAGGATTGTGGTGGGTGGGTTCTTGGTGGGTGTTTTGGTGATTGTGAATTTGGTTGGGTTGTTGTTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTACCATCATCAGGGGATTGACAAGAGTGCTTTGCATGATCACCTTGGCGGATATCTTGGAGAATATGTGCCTCTCAAAAGCAGCATTCAGATGGAAAACTTGGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.57

Weight (kDa)

7.17

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31130 AT4G19950 AT5G44860 AT5G44860
fragaria_vesca FvH4_3g12480
malus_domestica MD10G1230900.v1.1
prunus_persica Prupe.4G113700_v2.0.a1
pyrus_communis pycom10g19420
rosa_chinensis RchiOBHm_Chr5g0020421
rosa_laevigata RLG00000032529
rosa_multiflora Rmu_sc0000033.1_g000010
rosa_roxburghii Rroxscaffold_1G00057850
rosa_rugosa Rorug05G0059300
rosa_samantha Rh5AG150000 Rh5BG149200 Rh5CG160800 Rh5DG148400
rosa_wichuraiana Rw5G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 291, 357, 732, 900
AclWI GGATC 2 cut(s) 12, 445
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 1 cut(s) 656
AfaI GTAC 3 cut(s) 513, 537, 585
AfiI CCNNNNNNNGG 5 cut(s) 558, 599, 600, 733, 862
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 3 cut(s) 26, 182, 376
AluBI AGCT 4 cut(s) 22, 178, 624, 631
AluI AGCT 4 cut(s) 22, 178, 624, 631
Alw26I GTCTC 2 cut(s) 340, 409
AlwI GGATC 2 cut(s) 12, 445
AoxI GGCC 4 cut(s) 9, 184, 201, 567
ApeKI GCWGC 3 cut(s) 608, 631, 933
ApoI RAATTY 1 cut(s) 802
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 5 cut(s) 10, 185, 202, 222, 724
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 4 cut(s) 25, 148, 805, 884
AvaII GGWCC 2 cut(s) 222, 724
BalI TGGCCA 1 cut(s) 569
BanII GRGCYC 1 cut(s) 594
BarI GAAGNNNNNNTAC 2 cut(s) 504, 536
BbsI GAAGAC 3 cut(s) 292, 364, 427
BbvI GCAGC 3 cut(s) 595, 618, 945
BccI CCATC 5 cut(s) 44, 74, 368, 864, 937
BclI TGATCA 1 cut(s) 889
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 340, 409
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 382
BisI GCNGC 4 cut(s) 291, 609, 632, 934
BlsI GCNGC 4 cut(s) 292, 610, 633, 935
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 2 cut(s) 222, 724
BmgT120I GGNCC 5 cut(s) 10, 185, 202, 222, 724
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 200
BpiI GAAGAC 3 cut(s) 292, 364, 427
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 552, 727, 895
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 5 cut(s) 558, 599, 600, 733, 862
Bse1I ACTGG 1 cut(s) 241
BseDI CCNNGG 3 cut(s) 552, 727, 895
BseGI GGATG 5 cut(s) 36, 45, 66, 360, 961
BseLI CCNNNNNNNGG 5 cut(s) 558, 599, 600, 733, 862
BseMII CTCAG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 4 cut(s) 32, 221, 224, 334
BseXI GCAGC 3 cut(s) 595, 618, 945
BshFI GGCC 4 cut(s) 11, 186, 203, 569
BsiSI CCGG 2 cut(s) 200, 504
BslFI GGGAC 2 cut(s) 64, 727
BslI CCNNNNNNNGG 5 cut(s) 558, 599, 600, 733, 862
BsmAI GTCTC 2 cut(s) 340, 409
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 64, 727
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 4 cut(s) 11, 186, 203, 569
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 594
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 3 cut(s) 4, 450, 889
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 4 cut(s) 291, 357, 732, 900
BspANI GGCC 4 cut(s) 11, 186, 203, 569
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 2 cut(s) 12, 445
BspQI GCTCTTC 1 cut(s) 614
BspTNI GGTCTC 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 552, 727, 895
BssMI GATC 3 cut(s) 4, 450, 889
BssT1I CCWWGG 2 cut(s) 727, 895
Bst4CI ACNGT 6 cut(s) 78, 226, 307, 516, 553, 718
Bst6I CTCTTC 5 cut(s) 158, 242, 269, 389, 614
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 2 cut(s) 50, 84
BstDSI CCRYGG 2 cut(s) 552, 727
BstF5I GGATG 5 cut(s) 36, 45, 66, 360, 961
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 7, 453, 892
BstMAI GTCTC 2 cut(s) 340, 409
BstMBI GATC 3 cut(s) 4, 450, 889
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 595, 618, 945
BstV2I GAAGAC 3 cut(s) 292, 364, 427
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 4 cut(s) 11, 186, 203, 569
BtgI CCRYGG 2 cut(s) 552, 727
BtgZI GCGATG 1 cut(s) 626
BtsCI GGATG 5 cut(s) 36, 45, 66, 360, 961
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 3 cut(s) 300, 303, 723
Cac8I GCNNGC 1 cut(s) 571
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 5 cut(s) 10, 185, 202, 222, 724
Csp6I GTAC 3 cut(s) 512, 536, 584
CviAII CATG 3 cut(s) 539, 728, 887
CviQI GTAC 3 cut(s) 512, 536, 584
DdeI CTNAG 2 cut(s) 50, 84
DpnI GATC 3 cut(s) 6, 452, 891
DpnII GATC 3 cut(s) 4, 450, 889
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 5 cut(s) 158, 242, 269, 389, 614
EarI CTCTTC 5 cut(s) 158, 242, 269, 389, 614
EciI GGCGGA 2 cut(s) 346, 915
Eco130I CCWWGG 2 cut(s) 727, 895
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 409
Eco32I GATATC 1 cut(s) 905
Eco47I GGWCC 2 cut(s) 222, 724
Eco57I CTGAAG 1 cut(s) 656
EcoRV GATATC 1 cut(s) 905
EcoT14I CCWWGG 2 cut(s) 727, 895
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 2 cut(s) 727, 895
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 3 cut(s) 542, 731, 890
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 2 cut(s) 64, 727
FatI CATG 3 cut(s) 538, 727, 886
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 4 cut(s) 291, 609, 632, 934
FokI GGATG 4 cut(s) 23, 32, 53, 347
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 4 cut(s) 291, 609, 632, 934
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 380
GluI GCNGC 4 cut(s) 291, 609, 632, 934
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 4 cut(s) 11, 186, 203, 569
HapII CCGG 2 cut(s) 200, 504
HhaI GCGC 1 cut(s) 381
Hin1II CATG 3 cut(s) 542, 731, 890
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 200, 504
HphI GGTGA 4 cut(s) 25, 148, 805, 884
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 4 cut(s) 53, 701, 942, 962
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 5 cut(s) 100, 139, 280, 464, 631
HpyCH4III ACNGT 6 cut(s) 78, 226, 307, 516, 553, 718
HpyCH4V TGCA 3 cut(s) 823, 846, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 50, 84
Hsp92II CATG 3 cut(s) 542, 731, 890
HspAI GCGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 3 cut(s) 4, 450, 889
LguI GCTCTTC 1 cut(s) 614
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 3 cut(s) 595, 618, 945
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 422, 851
MalI GATC 3 cut(s) 6, 452, 891
MboI GATC 3 cut(s) 4, 450, 889
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 4 cut(s) 26, 114, 427, 802
MluNI TGGCCA 1 cut(s) 569
Mox20I TGGCCA 1 cut(s) 569
MscI TGGCCA 1 cut(s) 569
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 941
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 2 cut(s) 200, 504
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 936
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 200
NcoI CCATGG 1 cut(s) 727
NdeII GATC 3 cut(s) 4, 450, 889
NlaIII CATG 3 cut(s) 542, 731, 890
NlaIV GGNNCC 1 cut(s) 12
NspI RCATGY 1 cut(s) 542
PciI ACATGT 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 614
PctI GAATGC 1 cut(s) 936
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 292, 610, 633, 935
PscI ACATGT 1 cut(s) 538
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 5 cut(s) 10, 185, 202, 222, 724
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 3 cut(s) 513, 537, 585
RsaNI GTAC 3 cut(s) 512, 536, 584
RseI CAYNNNNRTG 1 cut(s) 941
SapI GCTCTTC 1 cut(s) 614
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 291, 609, 632, 934
Sau3AI GATC 3 cut(s) 4, 450, 889
Sau96I GGNCC 5 cut(s) 10, 185, 202, 222, 724
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 594
SinI GGWCC 2 cut(s) 222, 724
SmiMI CAYNNNNRTG 1 cut(s) 941
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 4 cut(s) 26, 114, 427, 802
SsiI CCGC 4 cut(s) 291, 357, 732, 900
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 727, 895
TaaI ACNGT 6 cut(s) 78, 226, 307, 516, 553, 718
TasI AATT 4 cut(s) 26, 114, 427, 802
TatI WGTACW 3 cut(s) 511, 535, 583
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 300, 310, 723
TseI GCWGC 3 cut(s) 608, 631, 933
TspDTI ATGAA 2 cut(s) 376, 629
TspRI CASTG 3 cut(s) 300, 310, 723
VpaK11BI GGWCC 2 cut(s) 222, 724
XapI RAATTY 1 cut(s) 802
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.