Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Reverse (-)

5186328 .. 5188880

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0059300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGAGGCTCATCTTCCACACCATCTAGCTCGGATGGTACCACCCGTTCATGGATAATAGCCGGAGCGGCTGTGGCCGCAGCGACGGCAGCGTACGCGGTGGTTTCAAGGCGGCGATCGGCGAGGTTTCGGAGCCGGGTGGTCGGAATCATACCTGCGCGTTTTGCTTCCTCCAGATTTCCCGGCAAACCTCTGGTTCCGATACTCGGAAAGCCCATGATCCAGAGGACATGGGAAAGAGCAAAACTTGCAAACAAGCTGGATCAACTTGTTGTGGCTACTGATGATAAGAAAATAGCAGCATGCTGTTCAGATTTTGGAGCTAATGTCATAATGACATCAGAAACTTGCAGAAATGGAACTGAACGCTGCACTGAGGCGCTCCAAAAGCTTACGAAGAAGTTTGACATCGTTGTTAACATTCAGGGTGATGAACCTCTAATAGAGCCCGAGATAATCGATGGGGTTGTCATGGCCCTGCAGGCTGCCCCTGATGCTGTGTTTAGCACTGCAGTTACCTCATTGAAACCTGAAGATACCTCTGATCCAAATCGGGTGAAGTGTGTGGTGGACAATCATGGTTATGCAATCTATTTCTCAAGGGGTTTAATCCCCTACAACAAGTCAGGCAAGGTCAATCCACATTTTCCGTATTTACTTCATCTTGGTATTCAGAGCTATGATACAAAGTTCTTAAAGATATATCCAGAGCTTCCGCCTACTCCATTACAACTAGAAGAAGATTTGGAGCAGCTTAAGGTCCTTGAGAATGGATATAAGATGAAGGTAATAAAGGTTGATCATGAGGCTCACGGTGTTGATACTCCACAAGATGTAGAGAAGATAGAACGTTTCATGCGGGAAAGAAATTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.3

Weight (kDa)

8.86

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_3	PF02348	48 - 260	4.8e-58	Cytidylyltransferase
NTP_transf_3	PF12804	57 - 168	3.4e-09	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	2 cut(s)	98, 160
AciI	CCGC	6 cut(s)	68, 78, 98, 112, 716, 859
AclI	AACGTT	1 cut(s)	850
AclWI	GGATC	3 cut(s)	214, 270, 539
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	2 cut(s)	40, 95
AfiI	CCNNNNNNNGG	2 cut(s)	51, 206
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	2 cut(s)	108, 526
AluBI	AGCT	7 cut(s)	30, 259, 323, 391, 678, 712, 754
AluI	AGCT	7 cut(s)	30, 259, 323, 391, 678, 712, 754
AlwI	GGATC	3 cut(s)	214, 270, 539
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	75, 474
ApeKI	GCWGC	6 cut(s)	80, 89, 299, 369, 485, 751
ApoI	RAATTY	1 cut(s)	868
Asp718I	GGTACC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	160, 382
AspS9I	GGNCC	2 cut(s)	475, 760
AsuC2I	CCSGG	2 cut(s)	137, 183
AsuHPI	GGTGA	2 cut(s)	440, 568
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 763
BccI	CCATC	3 cut(s)	29, 31, 455
BceAI	ACGGC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	137, 183
BfaI	CTAG	2 cut(s)	27, 734
BfmI	CTRYAG	2 cut(s)	479, 510
BfoI	RGCGCY	1 cut(s)	383
BfrI	CTTAAG	1 cut(s)	755
BfuAI	ACCTGC	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	68, 482
BisI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 752
BlsI	GCNGC	9 cut(s)	70, 79, 82, 91, 114, 301, 371, 487, 753
Bme1390I	CCNGG	2 cut(s)	137, 183
Bme18I	GGWCC	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	475, 760
BmiI	GGNNCC	3 cut(s)	40, 134, 198
BmrFI	CCNGG	2 cut(s)	137, 183
BmsI	GCATC	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	2 cut(s)	583, 785
BpuMI	CCSGG	2 cut(s)	137, 183
Bsa29I	ATCGAT	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	549
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 312, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 206
Bse8I	GATNNNNATC	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	459
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	51, 206
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 763
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	98, 160
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	77, 476
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	63, 136, 183
BsiWI	CGTACG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	51, 206
BsnI	GGCC	2 cut(s)	77, 476
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	116, 219, 262, 544, 799
BspACI	CCGC	6 cut(s)	68, 78, 98, 112, 716, 859
BspANI	GGCC	2 cut(s)	77, 476
BspCNI	CTCAG	1 cut(s)	367
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	2 cut(s)	98, 160
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	40, 134, 198
BspMAI	CTGCAG	2 cut(s)	483, 514
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	3 cut(s)	214, 270, 539
BspT107I	GGYRCC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	68
BssMI	GATC	5 cut(s)	116, 219, 262, 544, 799
Bst4CI	ACNGT	1 cut(s)	815
BstAFI	CTTAAG	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	304, 483
BstDEI	CTNAG	2 cut(s)	375, 876
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	2 cut(s)	98, 160
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	2 cut(s)	160, 382
BstKTI	GATC	5 cut(s)	119, 222, 265, 547, 802
BstMBI	GATC	5 cut(s)	116, 219, 262, 544, 799
BstMCI	CGRYCG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	135, 181
BstSFI	CTRYAG	2 cut(s)	479, 510
BstUI	CGCG	2 cut(s)	98, 160
BstV1I	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 763
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	77, 476
BsuTUI	ATCGAT	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	372, 507
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	304, 483
CciI	TCATGA	1 cut(s)	802
CfoI	GCGC	2 cut(s)	160, 382
Cfr13I	GGNCC	2 cut(s)	475, 760
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	39, 94
CviAII	CATG	8 cut(s)	51, 217, 231, 303, 472, 578, 803, 856
CviQI	GTAC	2 cut(s)	39, 94
DdeI	CTNAG	2 cut(s)	375, 876
DpnI	GATC	5 cut(s)	118, 221, 264, 546, 801
DpnII	GATC	5 cut(s)	116, 219, 262, 544, 799
EaeI	YGGCCR	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	705
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 806, 859
FatI	CATG	8 cut(s)	50, 216, 230, 302, 471, 577, 802, 855
FauI	CCCGC	1 cut(s)	852
FbaI	TGATCA	1 cut(s)	799
Fnu4HI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 752
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 752
FspBI	CTAG	2 cut(s)	27, 734
GlaI	GCGC	2 cut(s)	159, 381
GluI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 752
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	77, 476
HapII	CCGG	3 cut(s)	63, 136, 183
HhaI	GCGC	2 cut(s)	160, 382
Hin1II	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 806, 859
Hin6I	GCGC	2 cut(s)	158, 380
HinP1I	GCGC	2 cut(s)	158, 380
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	1 cut(s)	147
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	3 cut(s)	63, 136, 183
HphI	GGTGA	2 cut(s)	440, 568
Hpy166II	GTNNAC	2 cut(s)	418, 571
Hpy188I	TCNGA	9 cut(s)	34, 132, 146, 201, 209, 313, 343, 544, 675
Hpy188III	TCNNGA	4 cut(s)	174, 223, 707, 803
Hpy8I	GTNNAC	2 cut(s)	418, 571
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	778
HpyCH4III	ACNGT	1 cut(s)	815
HpyCH4IV	ACGT	1 cut(s)	850
HpyCH4V	TGCA	6 cut(s)	251, 351, 372, 481, 512, 587
HpyF3I	CTNAG	2 cut(s)	375, 876
HpySE526I	ACGT	1 cut(s)	850
Hsp92II	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 806, 859
HspAI	GCGC	2 cut(s)	158, 380
KpnI	GGTACC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	799
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	116, 219, 262, 544, 799
LmnI	GCTCC	5 cut(s)	65, 132, 320, 387, 748
Lsp1109I	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 763
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	27, 734
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	118, 221, 264, 546, 801
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	5 cut(s)	116, 219, 262, 544, 799
MboII	GAAGA	6 cut(s)	6, 409, 545, 749, 752, 853
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	1 cut(s)	868
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	9 cut(s)	117, 181, 201, 219, 370, 447, 529, 550, 799
MseI	TTAA	4 cut(s)	417, 608, 695, 756
MslI	CAYNNNNRTG	1 cut(s)	582
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	3 cut(s)	63, 136, 183
MspR9I	CCNGG	2 cut(s)	137, 183
MvnI	CGCG	2 cut(s)	98, 160
NciI	CCSGG	2 cut(s)	137, 183
NdeII	GATC	5 cut(s)	116, 219, 262, 544, 799
NlaIII	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 806, 859
NlaIV	GGNNCC	3 cut(s)	40, 134, 198
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PagI	TCATGA	1 cut(s)	802
PfeI	GAWTC	1 cut(s)	147
Pfl23II	CGTACG	1 cut(s)	93
PkrI	GCNGC	9 cut(s)	70, 79, 82, 91, 114, 301, 371, 487, 753
Ple19I	CGATCG	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	760
Psp1406I	AACGTT	1 cut(s)	850
Psp5II	RGGWCCY	1 cut(s)	760
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	40, 134, 198
PspPI	GGNCC	2 cut(s)	475, 760
PspPPI	RGGWCCY	1 cut(s)	760
PsrI	GAACNNNNNNTAC	2 cut(s)	31, 63
PstI	CTGCAG	2 cut(s)	483, 514
PvuI	CGATCG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	40, 95
RsaNI	GTAC	2 cut(s)	39, 94
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	417, 608, 695, 756
SatI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 752
Sau3AI	GATC	5 cut(s)	116, 219, 262, 544, 799
Sau96I	GGNCC	2 cut(s)	475, 760
SbfI	CCTGCAGG	1 cut(s)	483
ScrFI	CCNGG	2 cut(s)	137, 183
SdaI	CCTGCAGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	2 cut(s)	479, 510
SinI	GGWCC	1 cut(s)	760
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	3 cut(s)	598, 755, 764
SmoI	CTYRAG	3 cut(s)	598, 755, 764
SphI	GCATGC	1 cut(s)	306
Sse8387I	CCTGCAGG	1 cut(s)	483
Sse9I	AATT	1 cut(s)	868
SsiI	CCGC	6 cut(s)	68, 78, 98, 112, 716, 859
SspMI	CTAG	2 cut(s)	27, 734
StyD4I	CCNGG	2 cut(s)	135, 181
TaaI	ACNGT	1 cut(s)	815
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	1 cut(s)	459
TasI	AATT	1 cut(s)	868
TauI	GCSGC	3 cut(s)	71, 80, 115
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	4 cut(s)	417, 608, 695, 756
Tru9I	TTAA	4 cut(s)	417, 608, 695, 756
TscAI	CASTG	2 cut(s)	379, 514
TseI	GCWGC	6 cut(s)	80, 89, 299, 369, 485, 751
TspDTI	ATGAA	5 cut(s)	39, 447, 650, 797, 844
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	2 cut(s)	379, 514
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	760
XapI	RAATTY	1 cut(s)	868
XceI	RCATGY	1 cut(s)	306
XspI	CTAG	2 cut(s)	27, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.