Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Forward (+)

30821591 .. 30824739

Gene Structure 3149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1209100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACTCGCCGTTCAAGGCTGATGCGGTGAAAGGGAAGGTGGCTCTGATAACCGGAGGTGGGTCAGGAATCGGGTTGGAAATGTCGACCCAATTCGGCAAACATGGAGCCTCCATTGCCATCATGGGCCGCCGGAAGCAAGTGCTTGACTCAGCCGTCTCCGAGCTTCGATCTCTTGGAATTCAGGCTGTTGGTTTTGAGGGAGATGTTCGTAAACAGGAAGATGCAAAAAGAGTGGTGGAATCAACTTTCCAGCATTTTGGTAGGCTTGACATACTTGTGAATGCTGCAGCTGGCAATTTTCTTGTATCAGCAGAGGATCTATCACCTAATGGATTTCGAACAGTTATGGATATTGATGCTGTTGGTACATTCACAATGTGCCACGAAGCACTCAAGTATCTTAAAAAAGGAGGGCCCGGAAGGGGCTCATCTGGTGGTGGAACAATATTGAACATCAGTGTTACTTTACATTATACAGCAGCTTGGTATCAAGTCCATGTATCAGCAGCCAAGGCAGCTGTCGATGCCACTATGAGAAACTTGGCACTCGAGTGGGGAACTGACTACGACATTAGGGTCAATGGAATAGCACCGGGTCCCATTGGTGATACACCTGGCATGAGTAAACTTGCACCTAAGGAGATAAATAGCAAAGCTAGAGATTACATGCCTTTGTATAAACTAGGGGACAAATGGGATATTGCTATGGCGGCTCTCTACCTTACTTCGGATGCAGGTAAATTCATCAATGGAACTGTCATTGTAGTAGACGGGGGACTTTGGCTGAGCCGGCCTCGCCATCTGCCAAAAGAAGCAGTGAAACAGCTTTCTCGAACAGTAGAGAAGAGATCTAGAAATGCACCAGTAGGGGTTCCAAGCAGCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0016020 GO:0031090 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

31.7

Weight (kDa)

9.46

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 212	1.4e-40	short chain dehydrogenase
SDR	PF23441	13 - 263	2.6e-07	SDR-like rossmann domain
KR	PF08659	15 - 125	4.2e-08	KR domain
adh_short_C2	PF13561	22 - 261	1.7e-48	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	155, 578
Acc36I	ACCTGC	1 cut(s)	728
AccI	GTMKAC	2 cut(s)	86, 771
AciI	CCGC	3 cut(s)	26, 130, 713
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	180, 743
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	60, 425, 730
AgsI	TTSAA	2 cut(s)	16, 454
AjnI	CCWGG	1 cut(s)	616
AleI	CACNNNNGTG	1 cut(s)	553
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	6 cut(s)	166, 293, 485, 521, 659, 829
AluI	AGCT	6 cut(s)	166, 293, 485, 521, 659, 829
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	3 cut(s)	127, 416, 794
ApaI	GGGCCC	1 cut(s)	420
ApeKI	GCWGC	6 cut(s)	287, 290, 482, 509, 518, 882
ApoI	RAATTY	2 cut(s)	180, 743
AspS9I	GGNCC	4 cut(s)	127, 416, 417, 599
AsuC2I	CCSGG	2 cut(s)	420, 597
AsuHPI	GGTGA	3 cut(s)	40, 318, 620
AsuII	TTCGAA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	420
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BanII	GRGCYC	2 cut(s)	420, 431
BbvI	GCAGC	5 cut(s)	274, 302, 494, 521, 530
BccI	CCATC	2 cut(s)	128, 810
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	618
BcnI	CCSGG	2 cut(s)	420, 597
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	3 cut(s)	660, 686, 855
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	728
BglII	AGATCT	1 cut(s)	851
BisI	GCNGC	8 cut(s)	130, 288, 291, 483, 510, 519, 714, 883
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	8 cut(s)	131, 289, 292, 484, 511, 520, 715, 884
Bme1390I	CCNGG	3 cut(s)	420, 597, 618
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	4 cut(s)	127, 416, 417, 599
BmiI	GGNNCC	5 cut(s)	109, 418, 600, 601, 876
BmrFI	CCNGG	3 cut(s)	420, 597, 618
BmsI	GCATC	5 cut(s)	13, 214, 349, 517, 724
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu1102I	GCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	420, 597
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 425, 730
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	1 cut(s)	866
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	739
BseLI	CCNNNNNNNGG	3 cut(s)	60, 425, 730
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	165, 779
BseNI	ACTGG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	5 cut(s)	274, 302, 494, 521, 530
BshFI	GGCC	3 cut(s)	129, 418, 796
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	5 cut(s)	54, 133, 420, 596, 793
BslFI	GGGAC	3 cut(s)	585, 704, 792
BslI	CCNNNNNNNGG	3 cut(s)	60, 425, 730
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	3 cut(s)	585, 704, 792
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	129, 418, 796
BsoBI	CYCGRG	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	340
Bsp120I	GGGCCC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	420, 431
Bsp143I	GATC	3 cut(s)	170, 319, 851
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	3 cut(s)	26, 130, 713
BspANI	GGCC	3 cut(s)	129, 418, 796
BspCNI	CTCAG	2 cut(s)	164, 780
BspLI	GGNNCC	5 cut(s)	109, 418, 600, 601, 876
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	866
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	170, 319, 851
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	346, 760, 841
Bst6I	CTCTTC	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	295, 794
BstDEI	CTNAG	3 cut(s)	151, 639, 788
BstF5I	GGATG	1 cut(s)	739
BstKTI	GATC	3 cut(s)	173, 322, 854
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	3 cut(s)	170, 319, 851
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 515, 518, 527, 713, 793, 798
BstNI	CCWGG	1 cut(s)	618
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	3 cut(s)	418, 595, 616
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	5 cut(s)	274, 302, 494, 521, 530
BstX2I	RGATCY	2 cut(s)	319, 851
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	2 cut(s)	319, 851
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	3 cut(s)	129, 418, 796
BtsCI	GGATG	1 cut(s)	739
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	2 cut(s)	466, 825
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	2 cut(s)	295, 794
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	4 cut(s)	127, 416, 417, 599
Csp6I	GTAC	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	5 cut(s)	104, 124, 500, 622, 670
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	3 cut(s)	151, 639, 788
DpnI	GATC	3 cut(s)	172, 321, 853
DpnII	GATC	3 cut(s)	170, 319, 851
DraIII	CACNNNGTG	1 cut(s)	381
DrdI	GACNNNNNNGTC	2 cut(s)	155, 578
DseDI	GACNNNNNNGTC	2 cut(s)	155, 578
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	2 cut(s)	420, 431
Eco47I	GGWCC	1 cut(s)	599
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	551
EcoO109I	RGGNCCY	2 cut(s)	416, 599
EcoRI	GAATTC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	420, 431
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	5 cut(s)	107, 127, 503, 625, 673
FaqI	GGGAC	3 cut(s)	585, 704, 792
FatI	CATG	5 cut(s)	103, 123, 499, 621, 669
FblI	GTMKAC	2 cut(s)	86, 771
Fnu4HI	GCNGC	8 cut(s)	130, 288, 291, 483, 510, 519, 714, 883
FokI	GGATG	1 cut(s)	746
FriOI	GRGCYC	2 cut(s)	420, 431
Fsp4HI	GCNGC	8 cut(s)	130, 288, 291, 483, 510, 519, 714, 883
FspBI	CTAG	3 cut(s)	660, 686, 855
GluI	GCNGC	8 cut(s)	130, 288, 291, 483, 510, 519, 714, 883
HaeIII	GGCC	3 cut(s)	129, 418, 796
HapII	CCGG	5 cut(s)	54, 133, 420, 596, 793
Hin1II	CATG	5 cut(s)	107, 127, 503, 625, 673
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	4 cut(s)	5, 69, 149, 242
HpaII	CCGG	5 cut(s)	54, 133, 420, 596, 793
HphI	GGTGA	3 cut(s)	40, 318, 620
Hpy166II	GTNNAC	4 cut(s)	87, 215, 629, 772
Hpy188I	TCNGA	3 cut(s)	48, 163, 733
Hpy188III	TCNNGA	3 cut(s)	66, 834, 855
Hpy8I	GTNNAC	4 cut(s)	87, 215, 629, 772
HpyAV	CCTTC	2 cut(s)	31, 417
HpyCH4III	ACNGT	3 cut(s)	346, 760, 841
HpyCH4V	TGCA	5 cut(s)	227, 290, 635, 737, 863
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 515, 518, 527, 713, 793, 798
HpyF3I	CTNAG	3 cut(s)	151, 639, 788
Hsp92II	CATG	5 cut(s)	107, 127, 503, 625, 673
KflI	GGGWCCC	1 cut(s)	599
KroI	GCCGGC	1 cut(s)	792
KroNI	GCCGGC	1 cut(s)	794
Kzo9I	GATC	3 cut(s)	170, 319, 851
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	5 cut(s)	274, 302, 494, 521, 530
LweI	GCATC	5 cut(s)	13, 214, 349, 517, 724
MaeI	CTAG	3 cut(s)	660, 686, 855
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	3 cut(s)	172, 321, 853
MboI	GATC	3 cut(s)	170, 319, 851
MboII	GAAGA	2 cut(s)	233, 859
MflI	RGATCY	2 cut(s)	319, 851
MhlI	GDGCHC	2 cut(s)	420, 431
MluCI	AATT	4 cut(s)	92, 180, 298, 743
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	50, 121, 193, 310, 407, 807
MroNI	GCCGGC	1 cut(s)	792
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	278, 553
MspA1I	CMGCKG	2 cut(s)	293, 521
MspI	CCGG	5 cut(s)	54, 133, 420, 596, 793
MspR9I	CCNGG	3 cut(s)	420, 597, 618
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	7 cut(s)	116, 515, 518, 527, 713, 793, 798
NaeI	GCCGGC	1 cut(s)	794
NciI	CCSGG	2 cut(s)	420, 597
NdeII	GATC	3 cut(s)	170, 319, 851
NgoMIV	GCCGGC	1 cut(s)	792
NlaIII	CATG	5 cut(s)	107, 127, 503, 625, 673
NlaIV	GGNNCC	5 cut(s)	109, 418, 600, 601, 876
NspI	RCATGY	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	551
PctI	GAATGC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	794
PfeI	GAWTC	2 cut(s)	69, 242
PkrI	GCNGC	8 cut(s)	131, 289, 292, 484, 511, 520, 715, 884
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	5 cut(s)	109, 418, 600, 601, 876
PspOMI	GGGCCC	1 cut(s)	416
PspPI	GGNCC	4 cut(s)	127, 416, 417, 599
PspPPI	RGGWCCY	1 cut(s)	599
PspXI	VCTCGAGB	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	319, 851
PvuII	CAGCTG	2 cut(s)	293, 521
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	278, 553
SalI	GTCGAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	130, 288, 291, 483, 510, 519, 714, 883
Sau3AI	GATC	3 cut(s)	170, 319, 851
Sau96I	GGNCC	4 cut(s)	127, 416, 417, 599
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	420, 597, 618
SduI	GDGCHC	2 cut(s)	420, 431
SfaNI	GCATC	5 cut(s)	13, 214, 349, 517, 724
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	1 cut(s)	599
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	278, 553
SmlI	CTYRAG	2 cut(s)	395, 551
SmoI	CTYRAG	2 cut(s)	395, 551
Sse9I	AATT	4 cut(s)	92, 180, 298, 743
SsiI	CCGC	3 cut(s)	26, 130, 713
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	3 cut(s)	660, 686, 855
StyD4I	CCNGG	3 cut(s)	418, 595, 616
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	346, 760, 841
TaqI	TCGA	6 cut(s)	86, 169, 340, 525, 552, 835
TasI	AATT	4 cut(s)	92, 180, 298, 743
TauI	GCSGC	2 cut(s)	132, 716
TfiI	GAWTC	2 cut(s)	69, 242
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	466, 825
TseI	GCWGC	6 cut(s)	287, 290, 482, 509, 518, 882
TspDTI	ATGAA	1 cut(s)	736
TspRI	CASTG	2 cut(s)	466, 825
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	180, 743
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	551
XmiI	GTMKAC	2 cut(s)	86, 771
XspI	CTAG	3 cut(s)	660, 686, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.