Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Reverse (-)

7428019 .. 7431304

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGTCACCATTCAAGGCGGAGATACTGAAGGGGAAGGTGGCCTTGTTGACCGGAGGAGCATCGGGAATCGGGTACGAGATATCAGTTCAGTTGGGCAAACATGGAGCCTCCATTGCCGTCATGGGTCGTCGTAAAAACGTCATCGACTCTGCTGTTGAAACCCTTCTCTCCCTTGGCATTCCTGCTATCGGATTTGTGGGTGATGTTCGCAAAAGAGATGATGCAGTTAGAGTTTTGGAGTCAACTGTGAAGCATTTTGGTAGGCTTGACATCCTTGTAAATGCTGCTGCTGGCAATTTCCTTGTCCCGTCGGAGGATCTATCTCCCAATGGATTTCGAACAGTTTTGGATATAGATGCTGTTGGCACCTTTACAATGTGTCATGAAGCACTCAAGTATCTCAAGAAGAGGGCACCAGGGAAGGACTCATCTGCTGGAGGAACAATAATAAACATAAGTGCGACTTTGCATTATACAGCTAGTTGGTATCAAATTCATGTATCTGCAGCAAAGGCTGCTGTTGATAGCATTACAAGAAGCTTGGCACTGGAGTGGGGTACAGATTATGATATCAGAGTCAATGGTATTGCCCCAGGACCTATTGGAGACACTGCTGGCTTGAGTAAACTCTTACCTCAGGAGATGATGAGCGAATTAACGGCGAATCCTATAACAAAATTAGGACAGAAATGGGATATTGCTATGGCTGCAGTATATCTTGTGTCTACTGCAGGGAAATACATCAATGGAACAACATTGGTTGTAGATGGGGCAGATTGGTTGACCAAACCATCCCATCTTCCGAAAGAGGCAGTAAGGCAACTGTCCCGAGCAGTGGAGCGAAGGTCCAGAACTGTACAAGTTGGTATACCAAAGAGCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

297

Amino Acids

31.58

Weight (kDa)

9.38

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 210	3.3e-39	short chain dehydrogenase
KR	PF08659	15 - 135	3.9e-06	KR domain
adh_short_C2	PF13561	21 - 258	3.4e-43	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	368, 415
AccI	GTMKAC	2 cut(s)	728, 871
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	77, 562, 861
AfiI	CCNNNNNNNGG	3 cut(s)	191, 316, 838
AgsI	TTSAA	2 cut(s)	16, 161
AjnI	CCWGG	2 cut(s)	418, 595
AleI	CACNNNNGTG	1 cut(s)	553
AluBI	AGCT	3 cut(s)	482, 543, 886
AluI	AGCT	3 cut(s)	482, 543, 886
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	5 cut(s)	287, 290, 509, 518, 710
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	599, 849
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	2 cut(s)	599, 849
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	418
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BanI	GGYRCC	2 cut(s)	368, 415
BbvI	GCAGC	5 cut(s)	274, 277, 505, 521, 697
BccI	CCATC	3 cut(s)	764, 802, 807
BceAI	ACGGC	2 cut(s)	104, 678
BciT130I	CCWGG	2 cut(s)	420, 597
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	3 cut(s)	507, 711, 732
BisI	GCNGC	5 cut(s)	288, 291, 510, 519, 711
BlsI	GCNGC	5 cut(s)	289, 292, 511, 520, 712
Bme1390I	CCNGG	2 cut(s)	420, 597
Bme18I	GGWCC	2 cut(s)	599, 849
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	2 cut(s)	599, 849
BmiI	GGNNCC	3 cut(s)	109, 370, 417
BmrFI	CCNGG	2 cut(s)	420, 597
BmsI	GCATC	3 cut(s)	71, 214, 349
BpmI	CTGGAG	2 cut(s)	459, 572
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	3 cut(s)	380, 389, 643
BsaJI	CCNNGG	3 cut(s)	175, 419, 595
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	833, 863
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 316, 838
Bse1I	ACTGG	1 cut(s)	555
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	420, 597
BseDI	CCNNGG	3 cut(s)	175, 419, 595
BseGI	GGATG	2 cut(s)	273, 794
BseLI	CCNNNNNNNGG	3 cut(s)	191, 316, 838
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	5 cut(s)	274, 277, 505, 521, 697
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	368, 415
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	293, 814
BslI	CCNNNNNNNGG	3 cut(s)	191, 316, 838
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	2 cut(s)	293, 814
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	831
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	859
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	652
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	109, 370, 417
BspMAI	CTGCAG	3 cut(s)	511, 715, 736
BspPI	GGATC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	340
BspT107I	GGYRCC	2 cut(s)	368, 415
BsrDI	GCAATG	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	3 cut(s)	175, 419, 595
BssMI	GATC	1 cut(s)	319
BssNAI	GTATAC	1 cut(s)	872
BssT1I	CCWWGG	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	872
Bst2UI	CCWGG	2 cut(s)	420, 597
Bst4CI	ACNGT	4 cut(s)	250, 346, 828, 859
Bst6I	CTCTTC	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	859
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	295, 619, 884
BstDEI	CTNAG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	273, 794
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 515, 518, 710
BstNI	CCWGG	2 cut(s)	420, 597
BstSCI	CCNGG	2 cut(s)	418, 595
BstSFI	CTRYAG	3 cut(s)	507, 711, 732
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	5 cut(s)	274, 277, 505, 521, 697
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BstZ17I	GTATAC	1 cut(s)	872
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	273, 794
BtsI	GCAGTG	2 cut(s)	612, 843
BtsIMutI	CAGTG	3 cut(s)	548, 612, 843
Cac8I	GCNNGC	3 cut(s)	295, 619, 884
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	599, 849
Csp6I	GTAC	3 cut(s)	76, 561, 860
CviAII	CATG	4 cut(s)	104, 124, 386, 500
CviJI	RGCY	9 cut(s)	44, 110, 268, 482, 518, 543, 621, 710, 886
CviKI_1	RGCY	9 cut(s)	44, 110, 268, 482, 518, 543, 621, 710, 886
CviQI	GTAC	3 cut(s)	76, 561, 860
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	175
Eco32I	GATATC	2 cut(s)	84, 574
Eco47I	GGWCC	2 cut(s)	599, 849
Eco57I	CTGAAG	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	418, 595
EcoRV	GATATC	2 cut(s)	84, 574
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	4 cut(s)	107, 127, 389, 503
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 451, 483
FaqI	GGGAC	2 cut(s)	293, 814
FatI	CATG	4 cut(s)	103, 123, 385, 499
FblI	GTMKAC	2 cut(s)	728, 871
Fnu4HI	GCNGC	5 cut(s)	288, 291, 510, 519, 711
FokI	GGATG	2 cut(s)	260, 781
Fsp4HI	GCNGC	5 cut(s)	288, 291, 510, 519, 711
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	5 cut(s)	288, 291, 510, 519, 711
GsuI	CTGGAG	2 cut(s)	459, 572
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	4 cut(s)	107, 127, 389, 503
HincII	GTYRAC	3 cut(s)	51, 246, 786
HindII	GTYRAC	3 cut(s)	51, 246, 786
HindIII	AAGCTT	2 cut(s)	541, 884
HinfI	GANTC	7 cut(s)	5, 69, 149, 242, 428, 579, 667
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	6 cut(s)	51, 246, 629, 729, 786, 872
Hpy188I	TCNGA	4 cut(s)	194, 316, 578, 807
Hpy188III	TCNNGA	6 cut(s)	66, 386, 406, 641, 831, 852
Hpy8I	GTNNAC	6 cut(s)	51, 246, 629, 729, 786, 872
Hpy99I	CGWCG	2 cut(s)	135, 316
HpyAV	CCTTC	5 cut(s)	25, 31, 176, 418, 840
HpyCH4III	ACNGT	4 cut(s)	250, 346, 828, 859
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	227, 472, 509, 713, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 515, 518, 710
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	107, 127, 389, 503
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	3 cut(s)	59, 107, 841
Lsp1109I	GCAGC	5 cut(s)	274, 277, 505, 521, 697
LweI	GCATC	3 cut(s)	71, 214, 349
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	421, 794
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	4 cut(s)	298, 495, 656, 680
MlyI	GAGTC	5 cut(s)	14, 143, 251, 422, 588
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	7 cut(s)	50, 121, 310, 405, 434, 648, 805
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	2 cut(s)	659, 889
MslI	CAYNNNNRTG	1 cut(s)	553
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	420, 597
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	420, 597
MwoI	GCNNNNNNNGC	4 cut(s)	116, 515, 518, 710
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	4 cut(s)	107, 127, 389, 503
NlaIV	GGNNCC	3 cut(s)	109, 370, 417
NmuCI	GTSAC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	553
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	69, 667
PkrI	GCNGC	5 cut(s)	289, 292, 511, 520, 712
PleI	GAGTC	5 cut(s)	13, 143, 250, 422, 587
PpsI	GAGTC	5 cut(s)	13, 143, 250, 422, 587
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	418, 595
PspGI	CCWGG	2 cut(s)	418, 595
PspN4I	GGNNCC	3 cut(s)	109, 370, 417
PspPI	GGNCC	2 cut(s)	599, 849
PspPPI	RGGWCCY	1 cut(s)	599
PstI	CTGCAG	3 cut(s)	511, 715, 736
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	3 cut(s)	77, 562, 861
RsaNI	GTAC	3 cut(s)	76, 561, 860
RseI	CAYNNNNRTG	1 cut(s)	553
SaqAI	TTAA	2 cut(s)	659, 889
SatI	GCNGC	5 cut(s)	288, 291, 510, 519, 711
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	2 cut(s)	599, 849
SchI	GAGTC	5 cut(s)	14, 143, 251, 422, 588
ScrFI	CCNGG	2 cut(s)	420, 597
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	9 cut(s)	42, 144, 374, 484, 545, 604, 640, 851, 888
SfaNI	GCATC	3 cut(s)	71, 214, 349
SfcI	CTRYAG	3 cut(s)	507, 711, 732
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	2 cut(s)	599, 849
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	3 cut(s)	395, 404, 622
SmoI	CTYRAG	3 cut(s)	395, 404, 622
Sse9I	AATT	4 cut(s)	298, 495, 656, 680
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	418, 595
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	250, 346, 828, 859
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	147, 340
TasI	AATT	4 cut(s)	298, 495, 656, 680
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	2 cut(s)	69, 667
Tru1I	TTAA	2 cut(s)	659, 889
Tru9I	TTAA	2 cut(s)	659, 889
TscAI	CASTG	3 cut(s)	555, 619, 843
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	5 cut(s)	287, 290, 509, 518, 710
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	402, 488
TspRI	CASTG	3 cut(s)	555, 619, 843
VpaK11BI	GGWCC	2 cut(s)	599, 849
XapI	RAATTY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	2 cut(s)	728, 871
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.