Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Forward (+)

18481997 .. 18484318

Gene Structure 2322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG172900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGTCACCGTTTAAGGCGGATGCGTTGAAAGGGAAGGTGGCGTTGATAACGGGAGGCGGGTCGGGTATTGGGTTTGAGATTTCGACCCAGTTCGGGAAACATGGAGCGTCTATTGCTATTATGGGGAGGAGGAGGCAAGTGCTGGACTCTGCTGTGTCTGCTCTAAAGTCTTTGGGAATTCCGGCTATCGGCATCGAGGGGGATGTGCGTAAACAGGAAGATGCAAGAAGAGTGGTGGAATCAACTTTTCAGCATTTTGGCAGGCTTGACATACTTTTGAATGCTGCAGCTGGCAATTTTCTTGCATCAGCAGAAGATCTATCCCCTAATGGATTTCGAACAGTTTTGGATATTGATTCTGTTGGTACGTTCACAATGTGCTACGAAGCACTCAAGTATCTTAAAAAAGGAGGACCGGGAAGGAGCTCATCTGGTGGTGGAACAATTTTGAACATCAGTGTTACTTTACATTATTCCGCTTCTTGGTATCAAGTTCATGTGTCAGCAGCCAAGGCAGCTGTTGATGCCACTATGCGAAACTTGGCATTGGAGTGGGGAACTGACTATGATATCAGAGTCAATGGAATAGCTCCGGGCCCTATTGGTGATACGCCTGGCATGAGTAAACTTGCACCAAAGGAGATAGATGGCAAAGCCAGAGAGCAAATGCCGTTGTATAAACTAGGTGACAAATGGGATATTGCTATGGCTGCTCTCTACCTTTCATCAGATGCAGGGAAATTCGTTAATGGAGCTATCATTGTAGTTGATGGAGGACTTTGGCTGAGCCGGCCTCGCTATCTGCCAAAAGATGCTGTGAAACAGCTTTCCCGTGTAGTAGAGAAGAGATCTAGAAATGCACCAGTAGGGGTTCCAAGCAGCAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0016020 GO:0031090 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

297

Amino Acids

31.62

Weight (kDa)

9.46

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	9 - 263	1e-06	SDR-like rossmann domain
adh_short	PF00106	13 - 212	9e-38	short chain dehydrogenase
KR	PF08659	15 - 116	2.9e-06	KR domain
adh_short_C2	PF13561	22 - 261	5.1e-47	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 60, 480
AcsI	RAATTY	2 cut(s)	180, 743
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	96, 191, 486
AgsI	TTSAA	3 cut(s)	31, 283, 454
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	7 cut(s)	293, 429, 521, 593, 758, 829, 889
AluI	AGCT	7 cut(s)	293, 429, 521, 593, 758, 829, 889
Alw21I	GWGCWC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	598, 794
ApaI	GGGCCC	1 cut(s)	602
ApeKI	GCWGC	6 cut(s)	287, 290, 509, 518, 713, 882
ApoI	RAATTY	2 cut(s)	180, 743
AspS9I	GGNCC	3 cut(s)	416, 598, 599
AsuC2I	CCSGG	2 cut(s)	420, 597
AsuHPI	GGTGA	2 cut(s)	620, 701
AsuII	TTCGAA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	602
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BanII	GRGCYC	2 cut(s)	431, 602
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	5 cut(s)	274, 302, 521, 530, 700
BccI	CCATC	2 cut(s)	644, 767
BceAI	ACGGC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	618
BcnI	CCSGG	2 cut(s)	420, 597
BfaI	CTAG	2 cut(s)	686, 855
BfmI	CTRYAG	1 cut(s)	288
BglII	AGATCT	2 cut(s)	319, 851
BisI	GCNGC	6 cut(s)	288, 291, 510, 519, 714, 883
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	6 cut(s)	289, 292, 511, 520, 715, 884
Bme1390I	CCNGG	3 cut(s)	420, 597, 618
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	416, 598, 599
BmiI	GGNNCC	2 cut(s)	600, 876
BmrFI	CCNGG	3 cut(s)	420, 597, 618
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	7 cut(s)	13, 204, 214, 317, 517, 724, 805
BmuI	ACTGGG	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu1102I	GCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	420, 597
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 191, 486
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	2 cut(s)	91, 866
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	28, 211
BseLI	CCNNNNNNNGG	3 cut(s)	96, 191, 486
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	2 cut(s)	91, 866
BseRI	GAGGAG	2 cut(s)	145, 148
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	5 cut(s)	274, 302, 521, 530, 700
BshFI	GGCC	2 cut(s)	600, 796
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	4 cut(s)	185, 419, 596, 793
BslI	CCNNNNNNNGG	3 cut(s)	96, 191, 486
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	600, 796
Bsp119I	TTCGAA	1 cut(s)	340
Bsp120I	GGGCCC	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	431, 602
Bsp143I	GATC	2 cut(s)	319, 851
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	3 cut(s)	20, 60, 480
BspANI	GGCC	2 cut(s)	600, 796
BspCNI	CTCAG	1 cut(s)	780
BspLI	GGNNCC	2 cut(s)	600, 876
BspMAI	CTGCAG	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	91, 866
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	2 cut(s)	319, 851
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	2 cut(s)	12, 346
Bst6I	CTCTTC	2 cut(s)	226, 842
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	4 cut(s)	266, 295, 794, 887
BstDEI	CTNAG	1 cut(s)	788
BstF5I	GGATG	2 cut(s)	28, 211
BstKTI	GATC	2 cut(s)	322, 854
BstMBI	GATC	2 cut(s)	319, 851
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 161, 515, 518, 527, 713, 793, 798
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	3 cut(s)	418, 595, 616
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	5 cut(s)	274, 302, 521, 530, 700
BstX2I	RGATCY	2 cut(s)	319, 851
BstYI	RGATCY	2 cut(s)	319, 851
BsuRI	GGCC	2 cut(s)	600, 796
BtsCI	GGATG	2 cut(s)	28, 211
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	4 cut(s)	266, 295, 794, 887
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	3 cut(s)	416, 598, 599
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	3 cut(s)	104, 500, 622
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	1 cut(s)	788
DpnI	GATC	2 cut(s)	321, 853
DpnII	GATC	2 cut(s)	319, 851
DraIII	CACNNNGTG	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	226, 842
EarI	CTCTTC	2 cut(s)	226, 842
EciI	GGCGGA	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	2 cut(s)	431, 602
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	416
Eco53kI	GAGCTC	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	616
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	431, 602
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	3 cut(s)	107, 503, 625
FaiI	YATR	9 cut(s)	105, 125, 275, 501, 536, 570, 623, 681, 710
FatI	CATG	3 cut(s)	103, 499, 621
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	6 cut(s)	288, 291, 510, 519, 714, 883
FokI	GGATG	2 cut(s)	35, 218
FriOI	GRGCYC	2 cut(s)	431, 602
Fsp4HI	GCNGC	6 cut(s)	288, 291, 510, 519, 714, 883
FspBI	CTAG	2 cut(s)	686, 855
GluI	GCNGC	6 cut(s)	288, 291, 510, 519, 714, 883
HaeIII	GGCC	2 cut(s)	600, 796
HapII	CCGG	4 cut(s)	185, 419, 596, 793
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	107, 503, 625
HinfI	GANTC	5 cut(s)	5, 149, 242, 359, 579
HpaII	CCGG	4 cut(s)	185, 419, 596, 793
HphI	GGTGA	2 cut(s)	620, 701
Hpy166II	GTNNAC	3 cut(s)	215, 375, 629
Hpy188I	TCNGA	2 cut(s)	578, 733
Hpy188III	TCNNGA	2 cut(s)	97, 855
Hpy8I	GTNNAC	3 cut(s)	215, 375, 629
HpyAV	CCTTC	2 cut(s)	31, 417
HpyCH4III	ACNGT	2 cut(s)	12, 346
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	227, 290, 308, 635, 737, 863
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 161, 515, 518, 527, 713, 793, 798
HpyF3I	CTNAG	1 cut(s)	788
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	107, 503, 625
KroI	GCCGGC	1 cut(s)	792
KroNI	GCCGGC	1 cut(s)	794
Kzo9I	GATC	2 cut(s)	319, 851
LmnI	GCTCC	4 cut(s)	107, 426, 598, 755
Lsp1109I	GCAGC	5 cut(s)	274, 302, 521, 530, 700
LweI	GCATC	7 cut(s)	13, 204, 214, 317, 517, 724, 805
MaeI	CTAG	2 cut(s)	686, 855
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	3 cut(s)	6, 463, 689
MalI	GATC	2 cut(s)	321, 853
MboI	GATC	2 cut(s)	319, 851
MboII	GAAGA	4 cut(s)	233, 243, 329, 859
MflI	RGATCY	2 cut(s)	319, 851
MhlI	GDGCHC	2 cut(s)	431, 602
MluCI	AATT	4 cut(s)	180, 298, 447, 743
MlyI	GAGTC	3 cut(s)	14, 143, 588
MnlI	CCTC	8 cut(s)	50, 123, 126, 129, 193, 407, 770, 807
MroNI	GCCGGC	1 cut(s)	792
MseI	TTAA	3 cut(s)	15, 405, 750
MslI	CAYNNNNRTG	1 cut(s)	553
MspA1I	CMGCKG	2 cut(s)	293, 521
MspI	CCGG	4 cut(s)	185, 419, 596, 793
MspR9I	CCNGG	3 cut(s)	420, 597, 618
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	8 cut(s)	116, 161, 515, 518, 527, 713, 793, 798
NaeI	GCCGGC	1 cut(s)	794
NciI	CCSGG	2 cut(s)	420, 597
NdeII	GATC	2 cut(s)	319, 851
NgoMIV	GCCGGC	1 cut(s)	792
NlaIII	CATG	3 cut(s)	107, 503, 625
NlaIV	GGNNCC	2 cut(s)	600, 876
NmuCI	GTSAC	2 cut(s)	6, 689
NspV	TTCGAA	1 cut(s)	340
PctI	GAATGC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	794
PfeI	GAWTC	2 cut(s)	242, 359
PkrI	GCNGC	6 cut(s)	289, 292, 511, 520, 715, 884
PleI	GAGTC	3 cut(s)	13, 143, 587
PpsI	GAGTC	3 cut(s)	13, 143, 587
Psp124BI	GAGCTC	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	600, 876
PspOMI	GGGCCC	1 cut(s)	598
PspPI	GGNCC	3 cut(s)	416, 598, 599
PstI	CTGCAG	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	319, 851
PvuII	CAGCTG	2 cut(s)	293, 521
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	553
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	15, 405, 750
SatI	GCNGC	6 cut(s)	288, 291, 510, 519, 714, 883
Sau3AI	GATC	2 cut(s)	319, 851
Sau96I	GGNCC	3 cut(s)	416, 598, 599
SchI	GAGTC	3 cut(s)	14, 143, 588
ScrFI	CCNGG	3 cut(s)	420, 597, 618
SduI	GDGCHC	2 cut(s)	431, 602
SfaNI	GCATC	7 cut(s)	13, 204, 214, 317, 517, 724, 805
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	180, 298, 447, 743
SsiI	CCGC	3 cut(s)	20, 60, 480
SspMI	CTAG	2 cut(s)	686, 855
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	3 cut(s)	418, 595, 616
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	12, 346
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	3 cut(s)	86, 198, 340
TasI	AATT	4 cut(s)	180, 298, 447, 743
TfiI	GAWTC	2 cut(s)	242, 359
Tru1I	TTAA	3 cut(s)	15, 405, 750
Tru9I	TTAA	3 cut(s)	15, 405, 750
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	6, 689
TseI	GCWGC	6 cut(s)	287, 290, 509, 518, 713, 882
Tsp45I	GTSAC	2 cut(s)	6, 689
TspDTI	ATGAA	2 cut(s)	488, 717
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	2 cut(s)	180, 743
XbaI	TCTAGA	1 cut(s)	854
XspI	CTAG	2 cut(s)	686, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.