Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Reverse (-)

6072158 .. 6075033

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGTCTCCATTCAAGGCGGATATACTGAAGGGGAAGGTGGCTCTGTTGACAGGAGGAGCCTCAGGAATCGGGTATGAGATATCGCTTCAGTTGGGCCAGCATGGAGCCTCCATTGCTGTTATGGGTCGTCGCAAACATGTCATTGACTCTGCTGTTGAAGCCTTTCAGTCCCAAGGCATTCATGCTATTGGACTTGAGGGCGATGTTAGAAAAAGAGATGATGCAGCTAGAGTTTTGGAATCAACTGTGAAGCATTTTGGGAGGCTTGACATCCTTGTGAATGCTGCAGCTGGCAACTTCCTTGTGCCATCTGAGGATCTATCCCCCAACGGATTTCGAACAGTTATAGATATAGACGCTGTTGGCACTTTTACAATGTGTCGCGAAGCACTTAAGTATCTCAAGAAAGGAGCGTCAGGAAAAGACTCGTCTGTTGGTGGAACAATCATAAACATAAGTGCAACTTTGCATTATACAGCTACTTGGTATCAAATTCATGTATCTGCAGCAAAGGCTGCTGTTGATAGCCTTACAAGAAGCTTGGCATTGGAGTGGGGCACAGACTATGATATTAGAGTCAATGGTATTGCACCAGGACCTATTGAAGACACTGCTGGCTTCAGTAAACTTTTACCTCAGGAGATTTTGAGCACACTTAAAGAGCAGACTCTTGTATCTAAAGTAGGTCAGAAATGGGATATTGCTATGGCTGCACTATATCTTGCATCCAATGCAGGAAAATACATCAACGGAACAACATTGGTTGTCGATGGGGGAGACTGGCTGAGCAAACCCTCCCATCTTCCAAAAGAGGCGGTGAAGAAACTGTCCCGAGCCGTAGAGCGAAGGTCTAAAGATAAACCAGTTGGGATTCCTAAGAGTAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

31.74

Weight (kDa)

9.21

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	20, 818
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	3 cut(s)	50, 74, 607
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	16, 161, 608
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	5 cut(s)	230, 293, 482, 543, 889
AluI	AGCT	5 cut(s)	230, 293, 482, 543, 889
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	2 cut(s)	12, 774
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	6 cut(s)	227, 287, 290, 509, 518, 713
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	97, 599
AsuHPI	GGTGA	1 cut(s)	832
AsuII	TTCGAA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	1 cut(s)	599
AxyI	CCTNAGG	2 cut(s)	64, 639
BaeGI	GKGCMC	1 cut(s)	563
BaeI	ACNNNNGTAYC	4 cut(s)	383, 416, 660, 693
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	6 cut(s)	239, 274, 302, 505, 521, 700
BccI	CCATC	3 cut(s)	319, 767, 810
BceAI	ACGGC	1 cut(s)	824
BciT130I	CCWGG	1 cut(s)	597
BcoDI	GTCTC	2 cut(s)	12, 774
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	2 cut(s)	288, 507
BfrI	CTTAAG	1 cut(s)	395
BisI	GCNGC	6 cut(s)	228, 288, 291, 510, 519, 714
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	6 cut(s)	229, 289, 292, 511, 520, 715
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	2 cut(s)	97, 599
BmiI	GGNNCC	2 cut(s)	61, 109
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	2 cut(s)	214, 737
BpiI	GAAGAC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	218, 389
BsaJI	CCNNGG	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	788, 866
Bse21I	CCTNAGG	2 cut(s)	64, 639
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	273, 728
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	4 cut(s)	78, 306, 653, 779
BseNI	ACTGG	2 cut(s)	788, 866
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	6 cut(s)	239, 274, 302, 505, 521, 700
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	656
BsiHKCI	CYCGRG	1 cut(s)	834
BslFI	GGGAC	2 cut(s)	157, 817
BsmAI	GTCTC	2 cut(s)	12, 774
BsmFI	GGGAC	2 cut(s)	157, 817
BsmI	GAATGC	2 cut(s)	180, 289
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	834
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	563, 656
Bsp143I	GATC	1 cut(s)	319
Bsp1720I	GCTNAGC	1 cut(s)	788
Bsp68I	TCGCGA	1 cut(s)	387
BspACI	CCGC	2 cut(s)	20, 818
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	4 cut(s)	77, 307, 652, 780
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	61, 109
BspMAI	CTGCAG	2 cut(s)	292, 511
BspPI	GGATC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	340
BspTI	CTTAAG	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	788, 866
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	250, 346, 831
BstAFI	CTTAAG	1 cut(s)	395
BstAPI	GCANNNNNTGC	2 cut(s)	518, 734
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	101, 295, 619
BstDEI	CTNAG	5 cut(s)	64, 315, 639, 788, 879
BstF5I	GGATG	2 cut(s)	273, 728
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	2 cut(s)	12, 774
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 161, 515, 518, 713, 734
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	288, 507
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	6 cut(s)	239, 274, 302, 505, 521, 700
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu36I	CCTNAGG	2 cut(s)	64, 639
BsuRI	GGCC	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	273, 728
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
BtuMI	TCGCGA	1 cut(s)	387
Cac8I	GCNNGC	3 cut(s)	101, 295, 619
Cfr13I	GGNCC	2 cut(s)	97, 599
CseI	GACGC	2 cut(s)	368, 405
CviAII	CATG	4 cut(s)	104, 140, 185, 500
DdeI	CTNAG	5 cut(s)	64, 315, 639, 788, 879
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	3 cut(s)	50, 74, 607
Eco81I	CCTNAGG	2 cut(s)	64, 639
Eco88I	CYCGRG	1 cut(s)	834
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	595
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	4 cut(s)	107, 143, 188, 503
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	2 cut(s)	157, 817
FatI	CATG	4 cut(s)	103, 139, 184, 499
Fnu4HI	GCNGC	6 cut(s)	228, 288, 291, 510, 519, 714
FokI	GGATG	2 cut(s)	260, 715
Fsp4HI	GCNGC	6 cut(s)	228, 288, 291, 510, 519, 714
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	6 cut(s)	228, 288, 291, 510, 519, 714
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	2 cut(s)	368, 405
Hin1II	CATG	4 cut(s)	107, 143, 188, 503
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	541, 887
HinfI	GANTC	8 cut(s)	5, 69, 149, 242, 428, 579, 670, 874
HphI	GGTGA	1 cut(s)	832
Hpy166II	GTNNAC	2 cut(s)	51, 629
Hpy188I	TCNGA	2 cut(s)	316, 693
Hpy188III	TCNNGA	6 cut(s)	66, 386, 406, 420, 641, 834
Hpy8I	GTNNAC	2 cut(s)	51, 629
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	3 cut(s)	25, 31, 843
HpyCH4III	ACNGT	3 cut(s)	250, 346, 831
HpyCH4V	TGCA	9 cut(s)	227, 290, 464, 472, 509, 593, 716, 728, 737
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 161, 515, 518, 713, 734
HpyF3I	CTNAG	5 cut(s)	64, 315, 639, 788, 879
Hsp92II	CATG	4 cut(s)	107, 143, 188, 503
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	3 cut(s)	59, 107, 413
Lsp1109I	GCAGC	6 cut(s)	239, 274, 302, 505, 521, 700
LweI	GCATC	2 cut(s)	214, 737
MaeI	CTAG	1 cut(s)	231
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	3 cut(s)	620, 797, 835
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	563, 656
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	5 cut(s)	14, 143, 422, 588, 664
MnlI	CCTC	9 cut(s)	50, 73, 121, 193, 258, 310, 648, 808, 808
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	3 cut(s)	396, 660, 892
MslI	CAYNNNNRTG	2 cut(s)	278, 553
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	597
Mva1269I	GAATGC	2 cut(s)	180, 289
MvaI	CCWGG	1 cut(s)	597
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	6 cut(s)	116, 161, 515, 518, 713, 734
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	4 cut(s)	107, 143, 188, 503
NlaIV	GGNNCC	2 cut(s)	61, 109
NruI	TCGCGA	1 cut(s)	387
NspI	RCATGY	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	340
PciI	ACATGT	1 cut(s)	139
PctI	GAATGC	2 cut(s)	180, 289
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	69, 242, 874
PkrI	GCNGC	6 cut(s)	229, 289, 292, 511, 520, 715
PleI	GAGTC	5 cut(s)	13, 143, 422, 587, 664
PpsI	GAGTC	5 cut(s)	13, 143, 422, 587, 664
PpuMI	RGGWCCY	1 cut(s)	599
PscI	ACATGT	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	61, 109
PspPI	GGNCC	2 cut(s)	97, 599
PspPPI	RGGWCCY	1 cut(s)	599
PstI	CTGCAG	2 cut(s)	292, 511
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	293
RruI	TCGCGA	1 cut(s)	387
RseI	CAYNNNNRTG	2 cut(s)	278, 553
SaqAI	TTAA	3 cut(s)	396, 660, 892
SatI	GCNGC	6 cut(s)	228, 288, 291, 510, 519, 714
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	2 cut(s)	97, 599
SchI	GAGTC	5 cut(s)	14, 143, 422, 588, 664
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	2 cut(s)	563, 656
SfaNI	GCATC	2 cut(s)	214, 737
SfcI	CTRYAG	2 cut(s)	288, 507
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	278, 553
SmlI	CTYRAG	3 cut(s)	197, 395, 404
SmoI	CTYRAG	3 cut(s)	197, 395, 404
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	20, 818
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	250, 346, 831
TaqI	TCGA	2 cut(s)	340, 771
TasI	AATT	1 cut(s)	495
TfiI	GAWTC	3 cut(s)	69, 242, 874
Tru1I	TTAA	3 cut(s)	396, 660, 892
Tru9I	TTAA	3 cut(s)	396, 660, 892
TscAI	CASTG	1 cut(s)	619
TseI	GCWGC	6 cut(s)	227, 287, 290, 509, 518, 713
TspDTI	ATGAA	2 cut(s)	173, 488
TspGWI	ACGGA	2 cut(s)	348, 768
TspRI	CASTG	1 cut(s)	619
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.